Urochloa streak virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000874425.1
Isolate Nigeria: Ejigbo
Release date 2015/2/13
Submitter Oluwafemi,S., Varsani,A., Monjane,A.L., Shepherd,D.N., Owor,B.E., Rybicki,E.P., Martin,D.P.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_010797
TAATATTACAGCGTCCCCTTTGGCGAGGGGCCCATGCTAAACCGGGCCCCGAGCGGTCCTTTGCTGCTTTGTGTGTGGCGTGATTTAAATCCAGCCCTTGCTTTCGACCGCCGACAGGCTTTGGTGCTATAAATCGGTCCTCTGCTTCTCCTTTGTATGGAGAGCCAAGGTGCGATCTATCCTTTGCCTCAAAGTGCTTTGCCGCGGGTACCCTCTGCAGCTCCGTCATTTTCAGGACTGCCGTGGAGTCGCGTCGGTGAGATAGTTATATTCACTTTTGTTGCAGTGCTAGCGTTGTATTTGCTGTGGTTGTGGGTGCTGAGAGATCTTATCTTCATTGTTAAGGCTCGGCGAGGTAGATCTACGGAGGAGCTGCAATTCGGGGACCTTGAGCGTGCCCCGCCTGTCCCTTCTGCCGACGGTCCTCCGTCCGTTCCAGCGCCTTCTTGTCCTGCCCAGCCTAGGTCTCCCTTTCTAGGCTGAGCTGGTAGGCATGTCGTCTTCCCTTGGCAAGAGGAAGAGGTCCGATGAGGGCGCTTGGTCTAAGGGGAAGTCTAAGAAGAAGGCAATGAGAGGCTCGTCCTCTCGCAGGCCTGGCCCTGTCAGGGGGCCTCGTCCTGCTCTCCAAATTGCGCAGTACATAGCTGCGGGCACCTCTATGGTCACTGTCCCGTCCGGTGGCGTTTGTGAGCTCCTTGCGACCTACGCAAGAGGATCCGATGAGGGTAACAGGCACACCAACGAGACTGTTACGTACAAGGTCGCCCTGGATTACCACTTCGTGCTCACAGCAGAGGCCTGCCGCTACTCGTCCATCGGTGTAGGGGTGGCTTGGTTGGTGTATGACGCACAGCCCACCGGCAACGCCCCTCAGGTCTCTGACATATTCCCACACGGCGACACTCTCGCTGCATTCCCGTATACTTGGAAGGTCGGTAGGGAAGTGTGTCATCGCTTCGTGGTGAAACGGCGGTGGACTTTCACGATGGAGTCTGACGGGAGGATCGGCTCCGATATTCCTAGAACGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTCACCGGACTCGGTGTAAAAACCGAGTGGAAGAACGTAGCTGACGGAGGCGTAGGGGCCATTAAGAAGGGTGCTCTGTACCTGGTCATTGCCCCCGGCAATGGTCTCACTTTCACCGCGCATGGAATTGCGCGGTTGTACTTCAAGAGTGTTGGGAATCAGTGATTCCCTCGAATAATAAAATAATTTTTATAATTTCATTGATGAGCATGCAATGCGTACATTACATAGTCAGCCGATGGGCTGACGGAAAACACACATAAACAAGGCGGACAGGATAAAGGCGGGCGGCTAAGGGAAGCCGCATGGGGCAACACAACACACCCAACAGATCATTATTGAACATGCAGCCGCCGGCTTCAAACAGGGGAGAACCACTTCTCCCCTGGCGTCATAATGTATATGACGCAGTTTGCCTCGAAGTACTCCCGCTGTGCGGGAGTCATATCCTTCAGCCAGTCCTCATCTTCATTGGCGAGGACGATGGTCGGGATGCTTCTTGATGCGACCTTCTTGCGTTTGCCATACTTGGGGTTGACGATGTACTCCTTCTGACAGCCAATTAACTGCTTCCAACAAGGACAGTACTTGAAAGGAATATCGTCTACGATATTATACATAGCCTCTTCGTCATACGAGGTCCAGTCTACGTTATTCTGCCAGTAATTGTGGCGACCTTGGCTTCTAGCCCAGGTTGATTTCCCTGTCCTTGTAGGCCCGACGATGTAGAGGCTCTGCTTTCTGTCTGAAGGTAGTTGCTGTGTGTAACGTCATCGAGCCAGACAAGGTCAGACTCTGCCTGTTCTCGGGTGCAGTTGTTAATTAGCATGTATGCATCAGGGTGTACCTGGAAGATGTTGGGTTTGAGCCAATCATCTATTGTCTCTTTGCAGTGCAGCTCAGGCTCTGTCTGAGGATGAGGATGGATGTAAGGCTCAGGAATGTCAGGGAAGAGTTTATTGGCCGAGTACTCAAAGTACTGCAGCTTAGTGGCCCACTCGTAAGGGAGTTCATTCTGAAGCCTAGAGAGGTACTCCTGCTTGCTAGTAGAGTGCTCGATGATATCTCTAACGATATCATCCTTTGTTGGTTTAGGTGTGTGCTCATCGCCTTGGTGAGGAACGAAAGATTTCTTTCGTGGAATGAATGTACCTCTCTCCCATAGTGCGATTGGATCCTTCAGTATGTAGGCTCTTACCTTGTCTACAGACTTAGCTGATTGGATGTTCGGATGATGATCTTCTATGTCGAAGAATCTTGAATTTCTGGTCGTGACAGGCTTGACGCTCTGTGCAAGAGCATGGCAGTGCCATGTCCCGTCTTGGTGTGCCTCTCGACACACTATGATGTATGCCGGTTCCCATGGAGCTATCAAGCTCCATAGGGTGAGACCAATGGCTTCAGGCTCTAGAGGGCACTTGGGATAGGTGAGGTAGGTGTTTGCGTTCCGGTGCGTGAAGCTCCGTGACGCCACGCTGTTGGATGAAGATCCTACGGTAGCCATGAGCTCTAGCCTGGGTGCGATTTGCTCTCCCCAAACTCTATGCCTAGACAGTTCGCGTCGAAATCCCACCCACCCCATCCCCTTCTTATAGTAGGGATTGTTGGGCTGGGCCGGCTTTCAAATTTTTTGGGCCGGCCGACAAAGGGGACGCGAACAA

Gene Information

NCBI Accession YP_001941153.1
Location 157-483
Protein Name movement protein
Coding Region ATGGAGAGCCAAGGTGCGATCTATCCTTTGCCTCAAAGTGCTTTGCCGCGGGTACCCTCTGCAGCTCCGTCATTTTCAGGACTGCCGTGGAGTCGCGTCGGTGAGATAGTTATATTCACTTTTGTTGCAGTGCTAGCGTTGTATTTGCTGTGGTTGTGGGTGCTGAGAGATCTTATCTTCATTGTTAAGGCTCGGCGAGGTAGATCTACGGAGGAGCTGCAATTCGGGGACCTTGAGCGTGCCCCGCCTGTCCCTTCTGCCGACGGTCCTCCGTCCGTTCCAGCGCCTTCTTGTCCTGCCCAGCCTAGGTCTCCCTTTCTAGGCTGA
Protein Sequence MESQGAIYPLPQSALPRVPSAAPSFSGLPWSRVGEIVIFTFVAVLALYLLWLWVLRDLIFIVKARRGRSTEELQFGDLERAPPVPSADGPPSVPAPSCPAQPRSPFLG

NCBI Accession YP_001941154.1
Location 494-1240
Protein Name coat protein
Coding Region ATGTCGTCTTCCCTTGGCAAGAGGAAGAGGTCCGATGAGGGCGCTTGGTCTAAGGGGAAGTCTAAGAAGAAGGCAATGAGAGGCTCGTCCTCTCGCAGGCCTGGCCCTGTCAGGGGGCCTCGTCCTGCTCTCCAAATTGCGCAGTACATAGCTGCGGGCACCTCTATGGTCACTGTCCCGTCCGGTGGCGTTTGTGAGCTCCTTGCGACCTACGCAAGAGGATCCGATGAGGGTAACAGGCACACCAACGAGACTGTTACGTACAAGGTCGCCCTGGATTACCACTTCGTGCTCACAGCAGAGGCCTGCCGCTACTCGTCCATCGGTGTAGGGGTGGCTTGGTTGGTGTATGACGCACAGCCCACCGGCAACGCCCCTCAGGTCTCTGACATATTCCCACACGGCGACACTCTCGCTGCATTCCCGTATACTTGGAAGGTCGGTAGGGAAGTGTGTCATCGCTTCGTGGTGAAACGGCGGTGGACTTTCACGATGGAGTCTGACGGGAGGATCGGCTCCGATATTCCTAGAACGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTCACCGGACTCGGTGTAAAAACCGAGTGGAAGAACGTAGCTGACGGAGGCGTAGGGGCCATTAAGAAGGGTGCTCTGTACCTGGTCATTGCCCCCGGCAATGGTCTCACTTTCACCGCGCATGGAATTGCGCGGTTGTACTTCAAGAGTGTTGGGAATCAGTGA
Protein Sequence MSSSLGKRKRSDEGAWSKGKSKKKAMRGSSSRRPGPVRGPRPALQIAQYIAAGTSMVTVPSGGVCELLATYARGSDEGNRHTNETVTYKVALDYHFVLTAEACRYSSIGVGVAWLVYDAQPTGNAPQVSDIFPHGDTLAAFPYTWKVGREVCHRFVVKRRWTFTMESDGRIGSDIPRTTDAWPPCKRSIYFHKFVTGLGVKTEWKNVADGGVGAIKKGALYLVIAPGNGLTFTAHGIARLYFKSVGNQ

NCBI Accession YP_001941155.1
Location 1722-2657
Protein Name replication associated protein
Coding Region ATGGGGTGGGTGGGATTTCGACGCGAACTGTCTAGGCATAGAGTTTGGGGAGAGCAAATCGCACCCAGGCTAGAGCTCATGGCTACCGTAGGATCTTCATCCAACAGCGTGGCGTCACGGAGCTTCACGCACCGGAACGCAAACACCTACCTCACCTATCCCAAGTGCCCTCTAGAGCCTGAAGCCATTGGTCTCACCCTATGGAGCTTGATAGCTCCATGGGAACCGGCATACATCATAGTGTGTCGAGAGGCACACCAAGACGGGACATGGCACTGCCATGCTCTTGCACAGAGCGTCAAGCCTGTCACGACCAGAAATTCAAGATTCTTCGACATAGAAGATCATCATCCGAACATCCAATCAGCTAAGTCTGTAGACAAGGTAAGAGCCTACATACTGAAGGATCCAATCGCACTATGGGAGAGAGGTACATTCATTCCACGAAAGAAATCTTTCGTTCCTCACCAAGGCGATGAGCACACACCTAAACCAACAAAGGATGATATCGTTAGAGATATCATCGAGCACTCTACTAGCAAGCAGGAGTACCTCTCTAGGCTTCAGAATGAACTCCCTTACGAGTGGGCCACTAAGCTGCAGTACTTTGAGTACTCGGCCAATAAACTCTTCCCTGACATTCCTGAGCCTTACATCCATCCTCATCCTCAGACAGAGCCTGAGCTGCACTGCAAAGAGACAATAGATGATTGGCTCAAACCCAACATCTTCCAGGTACACCCTGATGCATACATGCTAATTAACAACTGCACCCGAGAACAGGCAGAGTCTGACCTTGTCTGGCTCGATGACGTTACACACAGCAACTACCTTCAGACAGAAAGCAGAGCCTCTACATCGTCGGGCCTACAAGGACAGGGAAATCAACCTGGGCTAGAAGCCAAGGTCGCCACAATTACTGGCAGAATAACGTAG
Protein Sequence MGWVGFRRELSRHRVWGEQIAPRLELMATVGSSSNSVASRSFTHRNANTYLTYPKCPLEPEAIGLTLWSLIAPWEPAYIIVCREAHQDGTWHCHALAQSVKPVTTRNSRFFDIEDHHPNIQSAKSVDKVRAYILKDPIALWERGTFIPRKKSFVPHQGDEHTPKPTKDDIVRDIIEHSTSKQEYLSRLQNELPYEWATKLQYFEYSANKLFPDIPEPYIHPHPQTEPELHCKETIDDWLKPNIFQVHPDAYMLINNCTREQAESDLVWLDDVTHSNYLQTESRASTSSGLQGQGNQPGLEAKVATITGRIT

References More References in PubMed

1

A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus.

Oluwafemi S, et al.  Arch Virol. 2014 Oct;159(10):2765-70. doi: 10.1007/s00705-014-2090-7. Epub 2014 May 6.

PMID: 24796552
2

Identification and molecular characterization of a novel sugarcane streak mastrevirus and an isolate of the A-strain of maize streak virus from sugarcane in Nigeria.

Yahaya A, et al.  Arch Virol. 2017 Feb;162(2):597-602. doi: 10.1007/s00705-016-3148-5. Epub 2016 Nov 4.

PMID: 27815694
3

A novel sugarcane-infecting mastrevirus from South Africa.

Lawry R, et al.  Arch Virol. 2009;154(10):1699-703. doi: 10.1007/s00705-009-0490-x. Epub 2009 Sep 12.

PMID: 19756359
4

First Report of Maize streak virus Field Infection of Sugarcane in South Africa.

van Antwerpen T, et al.  Plant Dis. 2008 Jun;92(6):982. doi: 10.1094/PDIS-92-6-0982A.

PMID: 30769738
5

A new African streak virus species from Nigeria.

Oluwafemi S, et al.  Arch Virol. 2008;153(7):1407-10. doi: 10.1007/s00705-008-0123-9. Epub 2008 Jun 3.

PMID: 18521534