Urochloa streak virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000874425.1 |
| Isolate |
Nigeria: Ejigbo |
| Release date |
2015/2/13 |
| Submitter |
Oluwafemi,S., Varsani,A., Monjane,A.L., Shepherd,D.N., Owor,B.E., Rybicki,E.P., Martin,D.P. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACAGCGTCCCCTTTGGCGAGGGGCCCATGCTAAACCGGGCCCCGAGCGGTCCTTTGCTGCTTTGTGTGTGGCGTGATTTAAATCCAGCCCTTGCTTTCGACCGCCGACAGGCTTTGGTGCTATAAATCGGTCCTCTGCTTCTCCTTTGTATGGAGAGCCAAGGTGCGATCTATCCTTTGCCTCAAAGTGCTTTGCCGCGGGTACCCTCTGCAGCTCCGTCATTTTCAGGACTGCCGTGGAGTCGCGTCGGTGAGATAGTTATATTCACTTTTGTTGCAGTGCTAGCGTTGTATTTGCTGTGGTTGTGGGTGCTGAGAGATCTTATCTTCATTGTTAAGGCTCGGCGAGGTAGATCTACGGAGGAGCTGCAATTCGGGGACCTTGAGCGTGCCCCGCCTGTCCCTTCTGCCGACGGTCCTCCGTCCGTTCCAGCGCCTTCTTGTCCTGCCCAGCCTAGGTCTCCCTTTCTAGGCTGAGCTGGTAGGCATGTCGTCTTCCCTTGGCAAGAGGAAGAGGTCCGATGAGGGCGCTTGGTCTAAGGGGAAGTCTAAGAAGAAGGCAATGAGAGGCTCGTCCTCTCGCAGGCCTGGCCCTGTCAGGGGGCCTCGTCCTGCTCTCCAAATTGCGCAGTACATAGCTGCGGGCACCTCTATGGTCACTGTCCCGTCCGGTGGCGTTTGTGAGCTCCTTGCGACCTACGCAAGAGGATCCGATGAGGGTAACAGGCACACCAACGAGACTGTTACGTACAAGGTCGCCCTGGATTACCACTTCGTGCTCACAGCAGAGGCCTGCCGCTACTCGTCCATCGGTGTAGGGGTGGCTTGGTTGGTGTATGACGCACAGCCCACCGGCAACGCCCCTCAGGTCTCTGACATATTCCCACACGGCGACACTCTCGCTGCATTCCCGTATACTTGGAAGGTCGGTAGGGAAGTGTGTCATCGCTTCGTGGTGAAACGGCGGTGGACTTTCACGATGGAGTCTGACGGGAGGATCGGCTCCGATATTCCTAGAACGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTCACCGGACTCGGTGTAAAAACCGAGTGGAAGAACGTAGCTGACGGAGGCGTAGGGGCCATTAAGAAGGGTGCTCTGTACCTGGTCATTGCCCCCGGCAATGGTCTCACTTTCACCGCGCATGGAATTGCGCGGTTGTACTTCAAGAGTGTTGGGAATCAGTGATTCCCTCGAATAATAAAATAATTTTTATAATTTCATTGATGAGCATGCAATGCGTACATTACATAGTCAGCCGATGGGCTGACGGAAAACACACATAAACAAGGCGGACAGGATAAAGGCGGGCGGCTAAGGGAAGCCGCATGGGGCAACACAACACACCCAACAGATCATTATTGAACATGCAGCCGCCGGCTTCAAACAGGGGAGAACCACTTCTCCCCTGGCGTCATAATGTATATGACGCAGTTTGCCTCGAAGTACTCCCGCTGTGCGGGAGTCATATCCTTCAGCCAGTCCTCATCTTCATTGGCGAGGACGATGGTCGGGATGCTTCTTGATGCGACCTTCTTGCGTTTGCCATACTTGGGGTTGACGATGTACTCCTTCTGACAGCCAATTAACTGCTTCCAACAAGGACAGTACTTGAAAGGAATATCGTCTACGATATTATACATAGCCTCTTCGTCATACGAGGTCCAGTCTACGTTATTCTGCCAGTAATTGTGGCGACCTTGGCTTCTAGCCCAGGTTGATTTCCCTGTCCTTGTAGGCCCGACGATGTAGAGGCTCTGCTTTCTGTCTGAAGGTAGTTGCTGTGTGTAACGTCATCGAGCCAGACAAGGTCAGACTCTGCCTGTTCTCGGGTGCAGTTGTTAATTAGCATGTATGCATCAGGGTGTACCTGGAAGATGTTGGGTTTGAGCCAATCATCTATTGTCTCTTTGCAGTGCAGCTCAGGCTCTGTCTGAGGATGAGGATGGATGTAAGGCTCAGGAATGTCAGGGAAGAGTTTATTGGCCGAGTACTCAAAGTACTGCAGCTTAGTGGCCCACTCGTAAGGGAGTTCATTCTGAAGCCTAGAGAGGTACTCCTGCTTGCTAGTAGAGTGCTCGATGATATCTCTAACGATATCATCCTTTGTTGGTTTAGGTGTGTGCTCATCGCCTTGGTGAGGAACGAAAGATTTCTTTCGTGGAATGAATGTACCTCTCTCCCATAGTGCGATTGGATCCTTCAGTATGTAGGCTCTTACCTTGTCTACAGACTTAGCTGATTGGATGTTCGGATGATGATCTTCTATGTCGAAGAATCTTGAATTTCTGGTCGTGACAGGCTTGACGCTCTGTGCAAGAGCATGGCAGTGCCATGTCCCGTCTTGGTGTGCCTCTCGACACACTATGATGTATGCCGGTTCCCATGGAGCTATCAAGCTCCATAGGGTGAGACCAATGGCTTCAGGCTCTAGAGGGCACTTGGGATAGGTGAGGTAGGTGTTTGCGTTCCGGTGCGTGAAGCTCCGTGACGCCACGCTGTTGGATGAAGATCCTACGGTAGCCATGAGCTCTAGCCTGGGTGCGATTTGCTCTCCCCAAACTCTATGCCTAGACAGTTCGCGTCGAAATCCCACCCACCCCATCCCCTTCTTATAGTAGGGATTGTTGGGCTGGGCCGGCTTTCAAATTTTTTGGGCCGGCCGACAAAGGGGACGCGAACAA
Gene Information
|
NCBI Accession
|
YP_001941153.1
|
|
Location
|
157-483 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGAGAGCCAAGGTGCGATCTATCCTTTGCCTCAAAGTGCTTTGCCGCGGGTACCCTCTGCAGCTCCGTCATTTTCAGGACTGCCGTGGAGTCGCGTCGGTGAGATAGTTATATTCACTTTTGTTGCAGTGCTAGCGTTGTATTTGCTGTGGTTGTGGGTGCTGAGAGATCTTATCTTCATTGTTAAGGCTCGGCGAGGTAGATCTACGGAGGAGCTGCAATTCGGGGACCTTGAGCGTGCCCCGCCTGTCCCTTCTGCCGACGGTCCTCCGTCCGTTCCAGCGCCTTCTTGTCCTGCCCAGCCTAGGTCTCCCTTTCTAGGCTGA |
|
Protein Sequence
|
MESQGAIYPLPQSALPRVPSAAPSFSGLPWSRVGEIVIFTFVAVLALYLLWLWVLRDLIFIVKARRGRSTEELQFGDLERAPPVPSADGPPSVPAPSCPAQPRSPFLG |
|
NCBI Accession
|
YP_001941154.1
|
|
Location
|
494-1240 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGTCTTCCCTTGGCAAGAGGAAGAGGTCCGATGAGGGCGCTTGGTCTAAGGGGAAGTCTAAGAAGAAGGCAATGAGAGGCTCGTCCTCTCGCAGGCCTGGCCCTGTCAGGGGGCCTCGTCCTGCTCTCCAAATTGCGCAGTACATAGCTGCGGGCACCTCTATGGTCACTGTCCCGTCCGGTGGCGTTTGTGAGCTCCTTGCGACCTACGCAAGAGGATCCGATGAGGGTAACAGGCACACCAACGAGACTGTTACGTACAAGGTCGCCCTGGATTACCACTTCGTGCTCACAGCAGAGGCCTGCCGCTACTCGTCCATCGGTGTAGGGGTGGCTTGGTTGGTGTATGACGCACAGCCCACCGGCAACGCCCCTCAGGTCTCTGACATATTCCCACACGGCGACACTCTCGCTGCATTCCCGTATACTTGGAAGGTCGGTAGGGAAGTGTGTCATCGCTTCGTGGTGAAACGGCGGTGGACTTTCACGATGGAGTCTGACGGGAGGATCGGCTCCGATATTCCTAGAACGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTCACCGGACTCGGTGTAAAAACCGAGTGGAAGAACGTAGCTGACGGAGGCGTAGGGGCCATTAAGAAGGGTGCTCTGTACCTGGTCATTGCCCCCGGCAATGGTCTCACTTTCACCGCGCATGGAATTGCGCGGTTGTACTTCAAGAGTGTTGGGAATCAGTGA |
|
Protein Sequence
|
MSSSLGKRKRSDEGAWSKGKSKKKAMRGSSSRRPGPVRGPRPALQIAQYIAAGTSMVTVPSGGVCELLATYARGSDEGNRHTNETVTYKVALDYHFVLTAEACRYSSIGVGVAWLVYDAQPTGNAPQVSDIFPHGDTLAAFPYTWKVGREVCHRFVVKRRWTFTMESDGRIGSDIPRTTDAWPPCKRSIYFHKFVTGLGVKTEWKNVADGGVGAIKKGALYLVIAPGNGLTFTAHGIARLYFKSVGNQ |
|
NCBI Accession
|
YP_001941155.1
|
|
Location
|
1722-2657 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGGGGTGGGTGGGATTTCGACGCGAACTGTCTAGGCATAGAGTTTGGGGAGAGCAAATCGCACCCAGGCTAGAGCTCATGGCTACCGTAGGATCTTCATCCAACAGCGTGGCGTCACGGAGCTTCACGCACCGGAACGCAAACACCTACCTCACCTATCCCAAGTGCCCTCTAGAGCCTGAAGCCATTGGTCTCACCCTATGGAGCTTGATAGCTCCATGGGAACCGGCATACATCATAGTGTGTCGAGAGGCACACCAAGACGGGACATGGCACTGCCATGCTCTTGCACAGAGCGTCAAGCCTGTCACGACCAGAAATTCAAGATTCTTCGACATAGAAGATCATCATCCGAACATCCAATCAGCTAAGTCTGTAGACAAGGTAAGAGCCTACATACTGAAGGATCCAATCGCACTATGGGAGAGAGGTACATTCATTCCACGAAAGAAATCTTTCGTTCCTCACCAAGGCGATGAGCACACACCTAAACCAACAAAGGATGATATCGTTAGAGATATCATCGAGCACTCTACTAGCAAGCAGGAGTACCTCTCTAGGCTTCAGAATGAACTCCCTTACGAGTGGGCCACTAAGCTGCAGTACTTTGAGTACTCGGCCAATAAACTCTTCCCTGACATTCCTGAGCCTTACATCCATCCTCATCCTCAGACAGAGCCTGAGCTGCACTGCAAAGAGACAATAGATGATTGGCTCAAACCCAACATCTTCCAGGTACACCCTGATGCATACATGCTAATTAACAACTGCACCCGAGAACAGGCAGAGTCTGACCTTGTCTGGCTCGATGACGTTACACACAGCAACTACCTTCAGACAGAAAGCAGAGCCTCTACATCGTCGGGCCTACAAGGACAGGGAAATCAACCTGGGCTAGAAGCCAAGGTCGCCACAATTACTGGCAGAATAACGTAG |
|
Protein Sequence
|
MGWVGFRRELSRHRVWGEQIAPRLELMATVGSSSNSVASRSFTHRNANTYLTYPKCPLEPEAIGLTLWSLIAPWEPAYIIVCREAHQDGTWHCHALAQSVKPVTTRNSRFFDIEDHHPNIQSAKSVDKVRAYILKDPIALWERGTFIPRKKSFVPHQGDEHTPKPTKDDIVRDIIEHSTSKQEYLSRLQNELPYEWATKLQYFEYSANKLFPDIPEPYIHPHPQTEPELHCKETIDDWLKPNIFQVHPDAYMLINNCTREQAESDLVWLDDVTHSNYLQTESRASTSSGLQGQGNQPGLEAKVATITGRIT |