Saccharum streak virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_000886895.1 |
| Isolate | South Africa: KwaZulu-Natal |
| Release date | 2015/2/22 |
| Submitter | Lawry,R., Martin,D.P., Shepherd,D.N., van Antwerpen,T., Varsani,A. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_013464
Gene Information
| NCBI Accession | YP_003288766.1 |
|---|---|
| Location | 156-485 |
| Protein Name | movement protein |
| Coding Region | ATGGAGGGCGCCTACGGTGCGATCTATCCTTCCGCGCAGAGTGCTTTGCCGCGGGTACCCATTGCAGCTCCGTCCTCTCCGAGCTTGCCGTGGAGTCGCGTCGGTGAGATAGCTATCTTTGTCTTTGTTGCAGTACTAAGCTTTTATCTGCTGTGGGTGTGGGTGCTGAGAGATCTTATCTTCGTTGTGAAGGCTCGCCGAGGGCACTCAACGGAGGAGCTGCGCTTTGGCCCTACCGTTCAAGCCCCTCCCGTCGCGCCAGTGTCTGTTCCTGGTGCGTCCGCTGTCACTGCTAGCTGTCCACCGGAGCCTAGACCTTTCTGTGTCTAG |
| Protein Sequence | MEGAYGAIYPSAQSALPRVPIAAPSSPSLPWSRVGEIAIFVFVAVLSFYLLWVWVLRDLIFVVKARRGHSTEELRFGPTVQAPPVAPVSVPGASAVTASCPPEPRPFCV |
| NCBI Accession | YP_003288767.1 |
|---|---|
| Location | 500-1243 |
| Protein Name | coat protein |
| Coding Region | ATGTCTTCTTCCCTTGGCAAGAGGAAGAGGTCGAATGGAGGCGATTGGTCTAAGCGCTCCGCTAAGAAGAAGCCGGCGGGTACCCCTTCACGCCGTGCTGGGCCTGGAAGAGGCCCACGTCCAGCTCTACAGATTGCGACCTACCAGGCCGCTGGAACCTCTATGGTTACTGTCCCTAGCGGGGGCGTTTGTGAACTCCTTGCGACATATGCTCGAGGGTCCGACGAGGGCAACCGTCACACCAACGAGACTATCACGTACAAGGTTGCCTTGGACTACCACTTTGTAGCCTCGTCTGCTGCTTGCAGGTACTCTTCCATCGGTGTGGGGGTCGTGTGGTTGGTGTATGATGCACAGCCCTCCGGCAATGCCCCCCAGGTAACGGATATCTTCCCGCATCCTGATAGTCTGGCCGCGTTCCCGTACACTTGGAAGGTCGGAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAGACGGACGGGCGTATCGGGAGCGATATCCCTCGGTCGACGGATTCTTGGCCGCCCTGCAAGCGGTCTATTTACTTTCACAAGTTTGCCACCGGTCTCGGTGTCAAAACGGAGTGGAAGAATCTCGCTGATGGAGGAGTTGGATCCATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCCGGCAATGGTTTAGAGTTTACGGCGCATGGCAATGCCCGTTTGTACTTTAAGTCTGTTGGAAATCAGTGA |
| Protein Sequence | MSSSLGKRKRSNGGDWSKRSAKKKPAGTPSRRAGPGRGPRPALQIATYQAAGTSMVTVPSGGVCELLATYARGSDEGNRHTNETITYKVALDYHFVASSAACRYSSIGVGVVWLVYDAQPSGNAPQVTDIFPHPDSLAAFPYTWKVGREVCHRFVVKRRWTFTMETDGRIGSDIPRSTDSWPPCKRSIYFHKFATGLGVKTEWKNLADGGVGSIKKGALYIVIAPGNGLEFTAHGNARLYFKSVGNQ |
| NCBI Accession | YP_003288768.1 |
|---|---|
| Location | 1442-1844,1931-2592 |
| Protein Name | RepA |
| Coding Region | ATGGCCTACGCTAACAGCACTAGCACTGAGAGTAACAGCTCTCGTTCCTTCAGGCACAGGAACGCAAACACCTTCCTAACCTACAGCAAGTGTAGCCTTGATCCCGAGATCTTGGGTCTGAGCCTATGGAGCAAGCTAGCTCCATGGACTCCGGCATACATCCTGGTGGCTAGAGAAGCTCATCAAGATGGGACATGGCACTGCCATGCCCTGGCACAGAGCGTCCGCCCCGTGACGACTTCAGACCCGCGGTTCTTCGACGTAAATGAGTACCACCCCAACATCCAGTCTGCTAAATCGGTAGACAGGGTAAGAGAGTACATACTCAAGGACCCATTGTGTCAGTGGGAGAAGGGTACTTTCGTTCCACGGAAGAAGCCCTTCGTTCCTCAGATCGGTGAGAGCTCTAACACTCGCGCCTCAAAGGATGATATCGTTCGCGATATCATTCAACACTCCACCAACAAGCACGAGTACCTCTCCATGCTTCAGAAGGAGCTACCGTACGAGTGGGCAACGAAGCTGCAGTACTTCGAGTACTCAGCTAATAAGCTGTTCCCTGAGATAGCAGAGCCCTACACCAATCCTCATCCACCAACACAACCCGACCTCCACTGCTACGAGCGCATTGAAGAATGGCTGAACTTCAACGTCTATCAGGTGCAACCTCAAGAGGCCGGAAGAGCGCGAAGCCTGTACATCGTCGGTCCAACAAGGACCGGCAAATCCACCTGGGCGAGAAGCCTAGGTCGCCACAACTACTGGCAGAATAACGTGGACTGGTCCTCATATGACGAGGAAGCAGTCCTGAATGTCATAGATGACATTCCCTTTAAATACTGTCCTTGCTGGAAGCAGCTCGTTGGCTGTCAGAAGAACTACGTTGTAAACCCGAAATACGGGAAGAAAAAGAAGGTCGCTAAACGCTCCATTCCTGCTGTAATCCTCGCCAACGAAGATGAGGACTGGCTGCGGGACATGACTCCCGCGCAGCGGGACTACATGGAGGCAAACTGCGAAGTCTACATCATGAGCTCCGGGGAGAAGTGGTTCACCCCTGCGTAA |
| Protein Sequence | MAYANSTSTESNSSRSFRHRNANTFLTYSKCSLDPEILGLSLWSKLAPWTPAYILVAREAHQDGTWHCHALAQSVRPVTTSDPRFFDVNEYHPNIQSAKSVDRVREYILKDPLCQWEKGTFVPRKKPFVPQIGESSNTRASKDDIVRDIIQHSTNKHEYLSMLQKELPYEWATKLQYFEYSANKLFPEIAEPYTNPHPPTQPDLHCYERIEEWLNFNVYQVQPQEAGRARSLYIVGPTRTGKSTWARSLGRHNYWQNNVDWSSYDEEAVLNVIDDIPFKYCPCWKQLVGCQKNYVVNPKYGKKKKVAKRSIPAVILANEDEDWLRDMTPAQRDYMEANCEVYIMSSGEKWFTPA |
References More References in PubMed
| 1 |
Historical Review of Sugarcane Streak Mosaic Virus that Has Recently Emerged in Africa. Daugrois J, et al. Phytopathology. 2024 Apr;114(4):668-680. doi: 10.1094/PHYTO-08-23-0291-RVW. Epub 2024 Apr 22. PMID: 37966994 |
|---|---|
| 2 |
Development and application of sugarcane streak mosaic virus vectors. Yin Y, et al. Virology. 2024 May;593:110028. doi: 10.1016/j.virol.2024.110028. Epub 2024 Feb 15. PMID: 38394980 |
| 3 |
Gao S, et al. Talanta. 2025 Aug 15;291:127888. doi: 10.1016/j.talanta.2025.127888. Epub 2025 Mar 3. PMID: 40049000 |
| 4 |
He Z, et al. Virus Res. 2016 Jan 4;211:103-16. doi: 10.1016/j.virusres.2015.09.020. Epub 2015 Sep 30. PMID: 26432446 |
| 5 |
First Report of Maize chlorotic mottle virus Infecting Sugarcane (Saccharum officinarum). Wang Q, et al. Plant Dis. 2014 Apr;98(4):572. doi: 10.1094/PDIS-07-13-0727-PDN. PMID: 30708716 |
| 6 |
First Report of Banana Streak Virus Infecting Sugarcane and Arrowroot in Colombia. Reichel H, et al. Plant Dis. 1997 May;81(5):552. doi: 10.1094/PDIS.1997.81.5.552B. PMID: 30861948 |
| 7 |
Yahaya A, et al. Arch Virol. 2017 Feb;162(2):597-602. doi: 10.1007/s00705-016-3148-5. Epub 2016 Nov 4. PMID: 27815694 |
| 8 |
Hema M, et al. Arch Virol. 1999;144(3):479-90. doi: 10.1007/s007050050519. PMID: 10226614 |
| 9 |
He Z, et al. Arch Virol. 2014 May;159(5):1149-54. doi: 10.1007/s00705-013-1854-9. Epub 2013 Nov 1. PMID: 24178307 |
| 10 |
Molecular characterization of a new strain of sugarcane streak mosaic virus (SCSMV). Li W, et al. Arch Virol. 2011 Nov;156(11):2101-4. doi: 10.1007/s00705-011-1090-0. Epub 2011 Sep 17. PMID: 21927898 |