Paspalum dilatatum striate mosaic virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000898615.1 |
| Isolate |
Australia |
| Release date |
2015/2/22 |
| Submitter |
Kraberger,S., Thomas,J.E., Geering,A.D., Dayaram,A., Stainton,D., Hadfield,J., Walters,M., Parmenter,K.S., van Brunschot,S., Collings,D.A., Martin,D.P., Varsani,A., Geering,A., Parmenter,K. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGGCGGAGTACCCTGAGTCTGCTTTAGTGGTAAGTGGTGCGATTCCACGGCGAAGCCAGGACGAGAGCTTTGCCTCGTCTTTGAAGGTCACTGCTTTATCTTTATTTGCAGCATTTATTGCTGCTTGCGTCTTGTCATTCATTTACAAGACGTGCATTGCGGAATTCATTACGCAATACCGTTTATCCGGTTTAAGCAGTGTAACTTCATCTGGCTTTGGGCGGACCGTTGAGGATCCGCCAGCTGTCCCCCGGACAGCGTCTGAGGTTTCAATTCCAGTTGCTGTTAGAAGTGGTATTCCTCCTGTGATTTCAGGTCCTTCCGGAATTCCCGGAAATTGACGTTGGAGATGCCGTCTTCCTCGAAGAGGAAGAGGGGGAGTACCTCTGGTACTAAGCGGCGTAAGAAGCCGCGAACCACGAAGTGGACTGGGTCCCGCAGCGCATCTAGAGAGGCGCTGCAAGTACAGACCTTCACCTGGAGTGAAGACCAGGCGTTCAACGCCGGTGGCCGAGCGATCCTTCTCTCGGCCTATACGCGCGGTTCTGGCGAGAACCAGCGCAAATCCCAGGAAACCATTACGTATAAGGTTGCTCTCAACCTTGGTGTTTCCGCATCCGCTACGGTACTCAAGTACTGCTGCAGCAGCCAGCCGATATGCTGGCTGGTGTATGACAAGACGCCTACTGGGATTACTGACCTGACCCCGTCAGACATCTTCGATGTGCCCTCGGGGTTACAGAACTGGCCTTCGACCTGGAAGGTCAAACGCGAAGCGTCTCACCGCTTTGTGGTGAAACGGCGTTGGCCGTTTAAGCTGGAATGTAACGGCAGTACGTTCCAGAAGGACTACACGAACCTGCCTGTCTGCAATACGCAGAACCTGGTGTCTGTAACGAGGTTCGCCAAGGGACTTGGAGTGCGAACGGAGTGGAAGGACACAACGACGGCGGAGTCGTCGGATATCAAGGGCGGAGCCCTGTACCTTGTGATAGCTCCTGCTAACGGGCTTGTGTTCACAGCCCGTGGTGTAATCAAGTGTTACTTTAAGTCTGTGGGTAATCAGTAGCCCACTGTAATTGAGCCCATTGGGCGATCTATGATCTGAAATAAAATGGCACATTTTATTTATCGCATTGCGATGAACGCGTAGCGTTACAAATTACAATACATAGCGCAGCCTCGGGCTAAAGACCGAGTCTGAAGCGACCCTAGTACAATACCACCGGAAAAACAATATCTATCTGATAATGCCTCGCGCGTAGGTGTGTAACACCTACGCCGTCGTTTCGAAGAAACGGAACCCTTGGTTCATGTAGAAGACGACGCAGTTGTCCTCAAACCATGCAGCCTGTGATGGCTGCATGTATTGGGGCCAGTCTTCATCCTCGTTCACGAGGATTATGGAAGGTATTCCGTTAGGAAGAAGACGTTTCTTCCCGTACTTTGGATTGACGGTGATGTCCCTCTGCGCCCCAACAAGCCCCTTCCAACAAGGAACAAACTTGAAAGGGATGTCATCTATGACGTTGTATCTGGCAGTGGGAATGACGTGGAGGAAGTCCACGGAATGCTGCCAGTAGTTATGACATCCAAGACTTCTTGCCCAAGAAGTCTTGCCTGTTCTTGTTGGTCCACAGATGTAGAGGCTTCTCCTTCGTTCAGCAGGACTTCTGTCCTGCTCAATTGAGATATCCATTGGAGGTCAAGCTTGGCTTGATCCTCCGTGACTCCGTTGTGAATGGAATATGCATAGGGACTTACAGAATATAATTCTTCTCGGAGCCATGCTCCGAGCACCTGATGTTCTGCCTGTGAAGGCATCCCGAAGGGATCAACATACGGAGGAGGGAGGCAGGGGAACAGCGCTTGCGCTGAGTATTCGAACTGCTGCAACCTTGTTGCCCAGTCGAATGGAAATTCTTTTTTGACCATCCCAAGATAGTCCTCACGTGATGTTGATTGAGAAATTATAGACGCCATTTTGGCGTCCTTCGTGGAAGGAGCGTCAGCCTTCCTCTTCTTCTTCTTCGCTTCGTCTTTGAAAGCCCCGTGCTCAACGAAGCATACGGGGCCTTTCTTGATGTACGCAAGTACCTTGTGAGGTACCCGCGCGTTCTGCACGTTAGGATGAAATTCTTCGACATCGAAGAATTTAGCACTCTTAGTGCGAATGTATTTTCTGCACTGTACTAGACAGTGCAAATGGTAAGAGCCATCCTTGTGCTCTTCCCTTGCGACGTATGTATACGTCGGGTCCCACTTCTTGAGAAGTCTGGAGAGGCGTTCAAGCATGTACGCCGGCTCCAGGTGGCACTTACTGTATGTCAGGAAGACATTCCTGCTTCTTACCTCGAAGCAAGCTTCGACCGCCCCTGGGGCGCCAACTTCCTCCCCCCGAAGGGGGGGGGCGCCAACTTGCCCCCTGGCGCCCTCTGTCTCACTGACATGTGAGGCCATCTTGGAAGAAGCTATCGTGGATAGCTTCACAGCCGTAGGATGTGCTTTGAGATCCGAGGTTTTGAAAAACTCTCTTGACAACCGTCGCCCCTTGCCCCCTTCCGCTGCTGAAGGGCCTATTAAATAGGCCGCAGCGGAGATGGCTTTAAATTGGGCCGGCCCCCCCGGAAAGTAGGGCGACGAGATAATATTACCGTCGCCCTGCTTTGCGAGGGCCCATGCTCAACGGGCCCGAGCGGTCCCGGCCCATCCACTAAGGATTGCTCCCCGCATTACGATAAATGGATTTGACTGCCGCTTTACTTTTAACGATGTCTATAAAAGACTGCATCGCACTACGACGCC
Gene Information
|
NCBI Accession
|
YP_006666521.1
|
|
Location
|
1-342 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGCGGAGTACCCTGAGTCTGCTTTAGTGGTAAGTGGTGCGATTCCACGGCGAAGCCAGGACGAGAGCTTTGCCTCGTCTTTGAAGGTCACTGCTTTATCTTTATTTGCAGCATTTATTGCTGCTTGCGTCTTGTCATTCATTTACAAGACGTGCATTGCGGAATTCATTACGCAATACCGTTTATCCGGTTTAAGCAGTGTAACTTCATCTGGCTTTGGGCGGACCGTTGAGGATCCGCCAGCTGTCCCCCGGACAGCGTCTGAGGTTTCAATTCCAGTTGCTGTTAGAAGTGGTATTCCTCCTGTGATTTCAGGTCCTTCCGGAATTCCCGGAAATTGA |
|
Protein Sequence
|
MAEYPESALVVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVLSFIYKTCIAEFITQYRLSGLSSVTSSGFGRTVEDPPAVPRTASEVSIPVAVRSGIPPVISGPSGIPGN |
|
NCBI Accession
|
YP_006666522.1
|
|
Location
|
351-1070 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCGTCTTCCTCGAAGAGGAAGAGGGGGAGTACCTCTGGTACTAAGCGGCGTAAGAAGCCGCGAACCACGAAGTGGACTGGGTCCCGCAGCGCATCTAGAGAGGCGCTGCAAGTACAGACCTTCACCTGGAGTGAAGACCAGGCGTTCAACGCCGGTGGCCGAGCGATCCTTCTCTCGGCCTATACGCGCGGTTCTGGCGAGAACCAGCGCAAATCCCAGGAAACCATTACGTATAAGGTTGCTCTCAACCTTGGTGTTTCCGCATCCGCTACGGTACTCAAGTACTGCTGCAGCAGCCAGCCGATATGCTGGCTGGTGTATGACAAGACGCCTACTGGGATTACTGACCTGACCCCGTCAGACATCTTCGATGTGCCCTCGGGGTTACAGAACTGGCCTTCGACCTGGAAGGTCAAACGCGAAGCGTCTCACCGCTTTGTGGTGAAACGGCGTTGGCCGTTTAAGCTGGAATGTAACGGCAGTACGTTCCAGAAGGACTACACGAACCTGCCTGTCTGCAATACGCAGAACCTGGTGTCTGTAACGAGGTTCGCCAAGGGACTTGGAGTGCGAACGGAGTGGAAGGACACAACGACGGCGGAGTCGTCGGATATCAAGGGCGGAGCCCTGTACCTTGTGATAGCTCCTGCTAACGGGCTTGTGTTCACAGCCCGTGGTGTAATCAAGTGTTACTTTAAGTCTGTGGGTAATCAGTAG |
|
Protein Sequence
|
MPSSSKRKRGSTSGTKRRKKPRTTKWTGSRSASREALQVQTFTWSEDQAFNAGGRAILLSAYTRGSGENQRKSQETITYKVALNLGVSASATVLKYCCSSQPICWLVYDKTPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFKLECNGSTFQKDYTNLPVCNTQNLVSVTRFAKGLGVRTEWKDTTTAESSDIKGGALYLVIAPANGLVFTARGVIKCYFKSVGNQ |
|
NCBI Accession
|
YP_006666523.1
|
|
Location
|
1278-1682,1766-2461 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGGCCTCACATGTCAGTGAGACAGAGGGCGCCAGGGGGCAAGTTGGCGCCCCCCCCCTTCGGGGGGAGGAAGTTGGCGCCCCAGGGGCGGTCGAAGCTTGCTTCGAGGTAAGAAGCAGGAATGTCTTCCTGACATACAGTAAGTGCCACCTGGAGCCGGCGTACATGCTTGAACGCCTCTCCAGACTTCTCAAGAAGTGGGACCCGACGTATACATACGTCGCAAGGGAAGAGCACAAGGATGGCTCTTACCATTTGCACTGTCTAGTACAGTGCAGAAAATACATTCGCACTAAGAGTGCTAAATTCTTCGATGTCGAAGAATTTCATCCTAACGTGCAGAACGCGCGGGTACCTCACAAGGTACTTGCGTACATCAAGAAAGGCCCCGTATGCTTCGTTGAGCACGGGGCTTTCAAAGACGAAGCGAAGAAGAAGAAGAGGAAGGCTGACGCTCCTTCCACGAAGGACGCCAAAATGGCGTCTATAATTTCTCAATCAACATCACGTGAGGACTATCTTGGGATGGTCAAAAAAGAATTTCCATTCGACTGGGCAACAAGGTTGCAGCAGTTCGAATACTCAGCGCAAGCGCTGTTCCCCTGCCTCCCTCCTCCGTATGTTGATCCCTTCGGGATGCCTTCACAGGCAGAACATCAGGTGCTCGGAGCATGGCTCCGAGAAGAATTATATTCTCAGGACAGAAGTCCTGCTGAACGAAGGAGAAGCCTCTACATCTGTGGACCAACAAGAACAGGCAAGACTTCTTGGGCAAGAAGTCTTGGATGTCATAACTACTGGCAGCATTCCGTGGACTTCCTCCACGTCATTCCCACTGCCAGATACAACGTCATAGATGACATCCCTTTCAAGTTTGTTCCTTGTTGGAAGGGGCTTGTTGGGGCGCAGAGGGACATCACCGTCAATCCAAAGTACGGGAAGAAACGTCTTCTTCCTAACGGAATACCTTCCATAATCCTCGTGAACGAGGATGAAGACTGGCCCCAATACATGCAGCCATCACAGGCTGCATGGTTTGAGGACAACTGCGTCGTCTTCTACATGAACCAAGGGTTCCGTTTCTTCGAAACGACGGCGTAG |
|
Protein Sequence
|
MASHVSETEGARGQVGAPPLRGEEVGAPGAVEACFEVRSRNVFLTYSKCHLEPAYMLERLSRLLKKWDPTYTYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFFDVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKRKADAPSTKDAKMASIISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVLGAWLREELYSQDRSPAERRRSLYICGPTRTGKTSWARSLGCHNYWQHSVDFLHVIPTARYNVIDDIPFKFVPCWKGLVGAQRDITVNPKYGKKRLLPNGIPSIILVNEDEDWPQYMQPSQAAWFEDNCVVFYMNQGFRFFETTA |
|
NCBI Accession
|
YP_006666524.1
|
|
Location
|
1523-2461 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGGCCTCACATGTCAGTGAGACAGAGGGCGCCAGGGGGCAAGTTGGCGCCCCCCCCCTTCGGGGGGAGGAAGTTGGCGCCCCAGGGGCGGTCGAAGCTTGCTTCGAGGTAAGAAGCAGGAATGTCTTCCTGACATACAGTAAGTGCCACCTGGAGCCGGCGTACATGCTTGAACGCCTCTCCAGACTTCTCAAGAAGTGGGACCCGACGTATACATACGTCGCAAGGGAAGAGCACAAGGATGGCTCTTACCATTTGCACTGTCTAGTACAGTGCAGAAAATACATTCGCACTAAGAGTGCTAAATTCTTCGATGTCGAAGAATTTCATCCTAACGTGCAGAACGCGCGGGTACCTCACAAGGTACTTGCGTACATCAAGAAAGGCCCCGTATGCTTCGTTGAGCACGGGGCTTTCAAAGACGAAGCGAAGAAGAAGAAGAGGAAGGCTGACGCTCCTTCCACGAAGGACGCCAAAATGGCGTCTATAATTTCTCAATCAACATCACGTGAGGACTATCTTGGGATGGTCAAAAAAGAATTTCCATTCGACTGGGCAACAAGGTTGCAGCAGTTCGAATACTCAGCGCAAGCGCTGTTCCCCTGCCTCCCTCCTCCGTATGTTGATCCCTTCGGGATGCCTTCACAGGCAGAACATCAGGTGCTCGGAGCATGGCTCCGAGAAGAATTATATTCTGTAAGTCCCTATGCATATTCCATTCACAACGGAGTCACGGAGGATCAAGCCAAGCTTGACCTCCAATGGATATCTCAATTGAGCAGGACAGAAGTCCTGCTGAACGAAGGAGAAGCCTCTACATCTGTGGACCAACAAGAACAGGCAAGACTTCTTGGGCAAGAAGTCTTGGATGTCATAACTACTGGCAGCATTCCGTGGACTTCCTCCACGTCATTCCCACTGCCAGATACAACGTCATAG |
|
Protein Sequence
|
MASHVSETEGARGQVGAPPLRGEEVGAPGAVEACFEVRSRNVFLTYSKCHLEPAYMLERLSRLLKKWDPTYTYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFFDVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKRKADAPSTKDAKMASIISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVLGAWLREELYSVSPYAYSIHNGVTEDQAKLDLQWISQLSRTEVLLNEGEASTSVDQQEQARLLGQEVLDVITTGSIPWTSSTSFPLPDTTS |