Panicum streak virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000839585.1
Release date 2015/2/12
Submitter Schnippenkoetter,W.H., Martin,D.P., Hughes,F.L., Fyvie,M., Willment,J.A., James,D., von Wechmar,M.B., Rybicki,E.P.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_001647
ACCGCTCACACCCCATGCGAGCCACGGCCCTGTGTGGCGAGCGGTCCCCGGATGTTCTTACCCCGGTGCGATTTCTTTAGCTGCGTGTTCTTTAGCAGCTGCCCCCACTGTCCTATAAGTTGCTCCCCGGTGCGATTCCGCATCATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAGAGCACTCAGCATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGATTACCACATCAATTAATAAAACAAGTTTTATTCAAAGAGCGAAGCTCATACATTACATAGTCAGCAGATATGCTGACAGAAAACACACACATAGTGCAGCCTCGGGCTAAAGACCGAGTCTCAAACGACCCAACTTAAAAACAAATCAAAACAAGCATGATATTATTAAATATGCAGCCGCCGGCTTAAGCAGGAGTGAACCACTTCTCTCCTGCCTGCATTACGTAGATTTCGCAGTTTGCGTAGAAGTAGTCATACTGCGCCGGAGTCATGTCCTTCAGCCAGTCCTCATCCTCGTTGGCGAGGATGATAGTTGGTATGCTCTTTGAGGCCACCTTCCGTCTCTTCCCGTACTTCGGGTTCACTATGTAGTCTTTTTGACAGCCGACGAGCTGCTTCCAGCACGGACAGAACTTGAAGGGAATGTCGTCCACGACATTGTACGCAGCTTCTTCATCGTATGAAGACCAGTCGATGTTATTCTGCCAGTAGTTGTGCCGTCCGAGGCTTCTGGCCCAGGATGTTTTACCTGTCCGTGTTGGGCCGACGATGTAGAGGCTTCGCTTTCTTGCTCCTGGAATAATCTGGTTGTTTCAGACAACCATTCTAAGTCAGCTTTGGCTTGCTCTAGGCTTAAGCAGCTAGGTTCAAGGAGCATGTATGCTTTAGGACTGACCTGGTAGATGTTAGGCTCAAGCCAGTCCTGGAGTGTTTCGTTGCAGAGGAGGTCAGGGTCAGTGGCAGGATGAGGATTGCTGTAAGGCTCTGCAATGTCCGGGAACAGGCGACTAGCTGAGTACTCAAAGTATGACAGTTTTGTGGCCCAGTCGTAAGGCAGTGAAGTCTGCACTAGTGAAAGGTACTCTGCTCTGCTAGTGGCATGTGTCATGATCTCCTTCATGACCTCATCCTTAGAAGGCTTCTTCTCAGAGTTTTCCTTACCTGGAGGAACGAAGCTCTTCTTCCTTGGTATGTAAGTACCTTTCTCCCACTTGTCCTTGGGATCCTTCAGTATGTACTCACGTACCTTGTCAGTGCTCTTGGCGCTCTGTATATTCGGATGATACCGATCTATGTCAAAGTACCTCTCGTCACGAGTAGTGACAGGCTTGATGCACTGGAGAAGAGCATGGCAGTGCCATGTTCCGTCTTGGTGAGTCTCTCTCACTACCAGGATGTATGCTGGCTCAAAGTCCTTAGTGAGCCTGAAGAGATGCTCACCGATGAACTCAGGTTCTAGTGGACACTTGCTGTATGTGAGGAAGGTGTTCGCGTTCCGGTGCCTGAAGGACCGGACGCTGTGCCTGCCATCTGAGGTGATAGACAGAGAGGTCGACATTAGCGCAGGAGGTTGGGCAATCTCAGGCTCTCCTCAGCTCTATCCCTAGACAGCTGCGAAATAATCCGCCCACCCCCCGTGCCTTTTATAGCTGCTTGGTGGGCTGGGCCGGCCGGCATGGGGTGTGAGCAGCATAATATT

Gene Information

NCBI Accession NP_042588.1
Location 145-468
Gene Name V1
Protein Name movement protein
Coding Region ATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAG
Protein Sequence MDASSTTPFPFPQPPRVPSAAPVAGALPWSRVGEIVIFTFVSVLGLYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRPFVV

NCBI Accession NP_042589.1
Location 479-1225
Gene Name CP
Protein Name coat protein
Coding Region ATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGA
Protein Sequence MSGALKRKRSDEVAWSRRKPVKKQDTGFPLPRAGPSVRRGLPALQIQTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKYSSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCFTMETNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIVIAPGNGLEFTVHGQCRLYFKSVGNQ

NCBI Accession NP_042590.1
Location 1590-2564
Gene Name RepA
Protein Name replication-associated protein
Coding Region ATGTCGACCTCTCTGTCTATCACCTCAGATGGCAGGCACAGCGTCCGGTCCTTCAGGCACCGGAACGCGAACACCTTCCTCACATACAGCAAGTGTCCACTAGAACCTGAGTTCATCGGTGAGCATCTCTTCAGGCTCACTAAGGACTTTGAGCCAGCATACATCCTGGTAGTGAGAGAGACTCACCAAGACGGAACATGGCACTGCCATGCTCTTCTCCAGTGCATCAAGCCTGTCACTACTCGTGACGAGAGGTACTTTGACATAGATCGGTATCATCCGAATATACAGAGCGCCAAGAGCACTGACAAGGTACGTGAGTACATACTGAAGGATCCCAAGGACAAGTGGGAGAAAGGTACTTACATACCAAGGAAGAAGAGCTTCGTTCCTCCAGGTAAGGAAAACTCTGAGAAGAAGCCTTCTAAGGATGAGGTCATGAAGGAGATCATGACACATGCCACTAGCAGAGCAGAGTACCTTTCACTAGTGCAGACTTCACTGCCTTACGACTGGGCCACAAAACTGTCATACTTTGAGTACTCAGCTAGTCGCCTGTTCCCGGACATTGCAGAGCCTTACAGCAATCCTCATCCTGCCACTGACCCTGACCTCCTCTGCAACGAAACACTCCAGGACTGGCTTGAGCCTAACATCTACCAGGTCAGTCCTAAAGCATACATGCTCCTTGAACCTAGCTGCTTAAGCCTAGAGCAAGCCAAAGCTGACTTAGAATGGTTGTCTGAAACAACCAGATTATTCCAGGAGCAAGAAAGCGAAGCCTCTACATCGTCGGCCCAACACGGACAGGTAAAACATCCTGGGCCAGAAGCCTCGGACGGCACAACTACTGGCAGAATAACATCGACTGGTCTTCATACGATGAAGAAGCTGCGTACAATGTCGTGGACGACATTCCCTTCAAGTTCTGTCCGTGCTGGAAGCAGCTCGTCGGCTGTCAAAAAGACTACATAG
Protein Sequence MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFRLTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDKVREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSLVQTSLPYDWATKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQVSPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEASDGTTTGRITSTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT

References More References in PubMed

1

Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography.

Varsani A, et al.  Virol J. 2009 Nov 10;6:194. doi: 10.1186/1743-422X-6-194.

PMID: 19903330
2

Panicum streak virus diversity is similar to that observed for maize streak virus.

Varsani A, et al.  Arch Virol. 2008;153(3):601-4. doi: 10.1007/s00705-007-0020-7. Epub 2008 Jan 3.

PMID: 18172570
3

The nucleotide sequence of an infectious insect-transmissible clone of the geminivirus Panicum streak virus.

Briddon RW, et al.  J Gen Virol. 1992 May;73 ( Pt 5):1041-7. doi: 10.1099/0022-1317-73-5-1041.

PMID: 1588314
4

A Two-Amino Acid Difference in the Coat Protein of Satellite panicum mosaic virus Isolates Is Responsible for Differential Synergistic Interactions with Panicum mosaic virus.

Chowda-Reddy RV, et al.  Mol Plant Microbe Interact. 2019 Apr;32(4):479-490. doi: 10.1094/MPMI-09-18-0247-R. Epub 2019 Feb 28.

PMID: 30379112
5

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands.

Kraberger S, et al.  Virus Res. 2017 Jun 15;238:171-178. doi: 10.1016/j.virusres.2017.07.001. Epub 2017 Jul 4.

PMID: 28687345
6

Detection and typing of maize streak virus and other distantly related geminiviruses of grasses by polymerase chain reaction amplification of a conserved viral sequence.

Rybicki EP, et al.  J Gen Virol. 1990 Nov;71 ( Pt 11):2519-26. doi: 10.1099/0022-1317-71-11-2519.

PMID: 2254750
7

First Reports of Soilborne wheat mosaic virus and Wheat spindle streak mosaic virus in Africa.

Kapooria RG, et al.  Plant Dis. 2000 Aug;84(8):921. doi: 10.1094/PDIS.2000.84.8.921C.

PMID: 30832151
8

Serotyping and strain identification of maize streak virus isolates.

Pinner MS, et al.  J Gen Virol. 1990 Aug;71 ( Pt 8):1635-40. doi: 10.1099/0022-1317-71-8-1635.

PMID: 1697327
9

The nucleotide sequence and genome structure of the geminivirus miscanthus streak virus.

Chatani M, et al.  J Gen Virol. 1991 Oct;72 ( Pt 10):2325-31. doi: 10.1099/0022-1317-72-10-2325.

PMID: 1919519
10

Viromes of Monocotyledonous Weeds Growing in Crop Fields Reveal Infection by Several Viruses Suggesting Their Virus Reservoir Role.

Galbács ZN, et al.  Plants (Basel). 2024 Sep 23;13(18):2664. doi: 10.3390/plants13182664.

PMID: 39339638