Panicum streak virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000839585.1
Release date 2015/2/12
Submitter Schnippenkoetter,W.H., Martin,D.P., Hughes,F.L., Fyvie,M., Willment,J.A., James,D., von Wechmar,M.B., Rybicki,E.P.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_001647
ACCGCTCACACCCCATGCGAGCCACGGCCCTGTGTGGCGAGCGGTCCCCGGATGTTCTTACCCCGGTGCGATTTCTTTAGCTGCGTGTTCTTTAGCAGCTGCCCCCACTGTCCTATAAGTTGCTCCCCGGTGCGATTCCGCATCATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAGAGCACTCAGCATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGATTACCACATCAATTAATAAAACAAGTTTTATTCAAAGAGCGAAGCTCATACATTACATAGTCAGCAGATATGCTGACAGAAAACACACACATAGTGCAGCCTCGGGCTAAAGACCGAGTCTCAAACGACCCAACTTAAAAACAAATCAAAACAAGCATGATATTATTAAATATGCAGCCGCCGGCTTAAGCAGGAGTGAACCACTTCTCTCCTGCCTGCATTACGTAGATTTCGCAGTTTGCGTAGAAGTAGTCATACTGCGCCGGAGTCATGTCCTTCAGCCAGTCCTCATCCTCGTTGGCGAGGATGATAGTTGGTATGCTCTTTGAGGCCACCTTCCGTCTCTTCCCGTACTTCGGGTTCACTATGTAGTCTTTTTGACAGCCGACGAGCTGCTTCCAGCACGGACAGAACTTGAAGGGAATGTCGTCCACGACATTGTACGCAGCTTCTTCATCGTATGAAGACCAGTCGATGTTATTCTGCCAGTAGTTGTGCCGTCCGAGGCTTCTGGCCCAGGATGTTTTACCTGTCCGTGTTGGGCCGACGATGTAGAGGCTTCGCTTTCTTGCTCCTGGAATAATCTGGTTGTTTCAGACAACCATTCTAAGTCAGCTTTGGCTTGCTCTAGGCTTAAGCAGCTAGGTTCAAGGAGCATGTATGCTTTAGGACTGACCTGGTAGATGTTAGGCTCAAGCCAGTCCTGGAGTGTTTCGTTGCAGAGGAGGTCAGGGTCAGTGGCAGGATGAGGATTGCTGTAAGGCTCTGCAATGTCCGGGAACAGGCGACTAGCTGAGTACTCAAAGTATGACAGTTTTGTGGCCCAGTCGTAAGGCAGTGAAGTCTGCACTAGTGAAAGGTACTCTGCTCTGCTAGTGGCATGTGTCATGATCTCCTTCATGACCTCATCCTTAGAAGGCTTCTTCTCAGAGTTTTCCTTACCTGGAGGAACGAAGCTCTTCTTCCTTGGTATGTAAGTACCTTTCTCCCACTTGTCCTTGGGATCCTTCAGTATGTACTCACGTACCTTGTCAGTGCTCTTGGCGCTCTGTATATTCGGATGATACCGATCTATGTCAAAGTACCTCTCGTCACGAGTAGTGACAGGCTTGATGCACTGGAGAAGAGCATGGCAGTGCCATGTTCCGTCTTGGTGAGTCTCTCTCACTACCAGGATGTATGCTGGCTCAAAGTCCTTAGTGAGCCTGAAGAGATGCTCACCGATGAACTCAGGTTCTAGTGGACACTTGCTGTATGTGAGGAAGGTGTTCGCGTTCCGGTGCCTGAAGGACCGGACGCTGTGCCTGCCATCTGAGGTGATAGACAGAGAGGTCGACATTAGCGCAGGAGGTTGGGCAATCTCAGGCTCTCCTCAGCTCTATCCCTAGACAGCTGCGAAATAATCCGCCCACCCCCCGTGCCTTTTATAGCTGCTTGGTGGGCTGGGCCGGCCGGCATGGGGTGTGAGCAGCATAATATT

Gene Information

NCBI Accession NP_042588.1
Location 145-468
Gene Name V1
Protein Name movement protein
Coding Region ATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAG
Protein Sequence MDASSTTPFPFPQPPRVPSAAPVAGALPWSRVGEIVIFTFVSVLGLYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRPFVV

NCBI Accession NP_042589.1
Location 479-1225
Gene Name CP
Protein Name coat protein
Coding Region ATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGA
Protein Sequence MSGALKRKRSDEVAWSRRKPVKKQDTGFPLPRAGPSVRRGLPALQIQTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKYSSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCFTMETNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIVIAPGNGLEFTVHGQCRLYFKSVGNQ

NCBI Accession NP_042590.1
Location 1590-2564
Gene Name RepA
Protein Name replication-associated protein
Coding Region ATGTCGACCTCTCTGTCTATCACCTCAGATGGCAGGCACAGCGTCCGGTCCTTCAGGCACCGGAACGCGAACACCTTCCTCACATACAGCAAGTGTCCACTAGAACCTGAGTTCATCGGTGAGCATCTCTTCAGGCTCACTAAGGACTTTGAGCCAGCATACATCCTGGTAGTGAGAGAGACTCACCAAGACGGAACATGGCACTGCCATGCTCTTCTCCAGTGCATCAAGCCTGTCACTACTCGTGACGAGAGGTACTTTGACATAGATCGGTATCATCCGAATATACAGAGCGCCAAGAGCACTGACAAGGTACGTGAGTACATACTGAAGGATCCCAAGGACAAGTGGGAGAAAGGTACTTACATACCAAGGAAGAAGAGCTTCGTTCCTCCAGGTAAGGAAAACTCTGAGAAGAAGCCTTCTAAGGATGAGGTCATGAAGGAGATCATGACACATGCCACTAGCAGAGCAGAGTACCTTTCACTAGTGCAGACTTCACTGCCTTACGACTGGGCCACAAAACTGTCATACTTTGAGTACTCAGCTAGTCGCCTGTTCCCGGACATTGCAGAGCCTTACAGCAATCCTCATCCTGCCACTGACCCTGACCTCCTCTGCAACGAAACACTCCAGGACTGGCTTGAGCCTAACATCTACCAGGTCAGTCCTAAAGCATACATGCTCCTTGAACCTAGCTGCTTAAGCCTAGAGCAAGCCAAAGCTGACTTAGAATGGTTGTCTGAAACAACCAGATTATTCCAGGAGCAAGAAAGCGAAGCCTCTACATCGTCGGCCCAACACGGACAGGTAAAACATCCTGGGCCAGAAGCCTCGGACGGCACAACTACTGGCAGAATAACATCGACTGGTCTTCATACGATGAAGAAGCTGCGTACAATGTCGTGGACGACATTCCCTTCAAGTTCTGTCCGTGCTGGAAGCAGCTCGTCGGCTGTCAAAAAGACTACATAG
Protein Sequence MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFRLTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDKVREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSLVQTSLPYDWATKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQVSPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEASDGTTTGRITSTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT

References More References in PubMed

1

Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography.

Varsani A, et al.  Virol J. 2009 Nov 10;6:194. doi: 10.1186/1743-422X-6-194.

PMID: 19903330
2

A Two-Amino Acid Difference in the Coat Protein of Satellite panicum mosaic virus Isolates Is Responsible for Differential Synergistic Interactions with Panicum mosaic virus.

Chowda-Reddy RV, et al.  Mol Plant Microbe Interact. 2019 Apr;32(4):479-490. doi: 10.1094/MPMI-09-18-0247-R. Epub 2019 Feb 28.

PMID: 30379112
3

The nucleotide sequence of an infectious insect-transmissible clone of the geminivirus Panicum streak virus.

Briddon RW, et al.  J Gen Virol. 1992 May;73 ( Pt 5):1041-7. doi: 10.1099/0022-1317-73-5-1041.

PMID: 1588314
4

Panicum streak virus diversity is similar to that observed for maize streak virus.

Varsani A, et al.  Arch Virol. 2008;153(3):601-4. doi: 10.1007/s00705-007-0020-7. Epub 2008 Jan 3.

PMID: 18172570
5

Detection and typing of maize streak virus and other distantly related geminiviruses of grasses by polymerase chain reaction amplification of a conserved viral sequence.

Rybicki EP, et al.  J Gen Virol. 1990 Nov;71 ( Pt 11):2519-26. doi: 10.1099/0022-1317-71-11-2519.

PMID: 2254750
6

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands.

Kraberger S, et al.  Virus Res. 2017 Jun 15;238:171-178. doi: 10.1016/j.virusres.2017.07.001. Epub 2017 Jul 4.

PMID: 28687345
7

First Reports of Soilborne wheat mosaic virus and Wheat spindle streak mosaic virus in Africa.

Kapooria RG, et al.  Plant Dis. 2000 Aug;84(8):921. doi: 10.1094/PDIS.2000.84.8.921C.

PMID: 30832151
8

Molecular characterisation of dicot-infecting mastreviruses from Australia.

Hadfield J, et al.  Virus Res. 2012 Jun;166(1-2):13-22. doi: 10.1016/j.virusres.2012.02.024. Epub 2012 Mar 3.

PMID: 22406325
9

The nucleotide sequence and genome structure of the geminivirus miscanthus streak virus.

Chatani M, et al.  J Gen Virol. 1991 Oct;72 ( Pt 10):2325-31. doi: 10.1099/0022-1317-72-10-2325.

PMID: 1919519
10

Comparative analysis of antiviral responses in Brachypodium distachyon and Setaria viridis reveals conserved and unique outcomes among C3 and C4 plant defenses.

Mandadi KK, et al.  Mol Plant Microbe Interact. 2014 Nov;27(11):1277-90. doi: 10.1094/MPMI-05-14-0152-R.

PMID: 25296115