Miscanthus streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000839945.1
Release date 2015/2/12
Submitter Chatani,M., Matsumoto,Y., Mizuta,H., Ikegami,M., Boulton,M.I., Davies,J.W.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003379
GGATCCCTATGGTAGCCGTCCTAGCCATCCTGATGATGGTGCACTGCATGGTATACTTGTGGCATTTATTGCGGTGCTTTGCCTCATAGGTTGCCTTTGGGCAGCATACCGACTGTTCCTTAAGGAGTGCCTTACTGATTGCAGTCAGCACACTTCATCAGGCGTCGTCGCGGGTCCTCGTCCGGCTGCAACAGGTCCTACTGCTGTTGTTGTACATAATGGTGCAGAAGCGCAAAGATCTTCGGCGTTCTGATGCCGGTTCTGCCGTTCGGGCCAAACTGCATAAGGCCTCGACTGGGAAGGCCTTCCCTGTAGGGAAGCGGGCTCCTCTGCAGATACGGTCCTATGCATGGGAGACGCCTGCCACGGCGACCACCCCTTCCGGACCTATCAGTATTACTGACGGTACCATCTTCATGTGTAACACCATTGACCCTGGGACTGGAGACGATCAGAGATCGCGGCATACCACGATGCTCTATAAGATGTCATTGAACGTGGTGCTCTGGCCTGGTGCGACTACGGCCCAAATAGTTGGGCCTTTCCGCGTGAACTTCTGGCTTGTGTATGATGCTGCCCCGACTGGAGTTGTCCCGAAGCTGACGGACATCTTTGACGTGGCCTATCCGAAGTGGGGAAACACTTGGCAGGTTTCCCGCTCTAATGTGCATAGGTTCATAGTTAAGCGTAAATGGAAGGTGGACTACCAGTCCTCTGGCGTCCCTGTTGGCAAGAGACAGAGCAGCGGTGTTGAATACGCCCCTGTTAATAATGTGGTGGAGTGCAACAAGTTCTTCGAGAAGCTGCGTGTGAAGACCGAATGGGCGAACACCTCTACCGGTGCAATTGGGGACGTGAAGAAGGGTGCGTTGTACCTGTGTGCCAATACCCGGCAGATGCCTGCTGGTGACTCAGTCACCACGAGTTGTACCACCATGATGCAAGGGTCTACCCGATTGTACTTCAAAGTGCTGGGGAACCAGTAATAATAAAAACTTATTTATTATATATTGCAAACCTGTGGATTACATGATAATGTGAGCGCATTATGCGCGACAACAAACTCAAGAAATTACATAAATTTGGGGGGTAGGGGCAAAGCAGGCGGCTATGGGCGCGCCCGCGGGCAACACACTTAAAAAAAACACAACAATAGATTCACTCTTCGGCCGGCAGGACGTAGAACTTCTGTCCTTCGTACATGTAATGTACGTGGGCGTTCGCGTGCAGGTACTCCACTTGTGCAGGTTTCATGTCCTTGATCCAGTCTTCGTCGTCATTGGTTAGAATGATGGACGGGATTCCCCCAGGGATTTTCTTCTTCTTACCGTACTTGGGATTCACTATGTAGTCACGCTGTGCTCCCACCAGCGCCTTCCACTGCGGCAAGAACTTGAAAGGCACATCGTCGATGACGTTGTAGATTGCATCTTTGTCATAGTGTGTGAAGTCTACGGTTGAGTTGTAGTAGTTGTGCCTCCCGATGTTTCTGGCCCAAGTGGTCTTTCCAGTTCGGCTTGGGCCGCAGATGTATATGCTTCGTGGTCTCCGCGGCCCGTTAGGCTGTATTCAAACCACTGTTGGTTTGTAAGTATTCAAGAAATTTGAAAGAGTGAAGCTTAATCGGTAGTTACCTGGTTCCATTCCTGGTCTATGATGTCAACGAGCTCCGGCGGACAGACGATCTGCTCATTTGGGAACGGTGACTGATATACCGGAGGTGGTTCGGTAAACAAGGCTGCTGCACTGTATTCAAACTGCTGGAGTCTGATGGCCCAGTCAAATGGGAATTCTTTACGGACCATGGACAGGTATTCATTCCTATTGGTGGAGGAGGCTATTATCATAGCCATCCTTTGATCACGGGTAGGCTTCTCGGGTTTCTTGATCCTGAGTTGGAGTTCACCCATTTCATCAGAGTCACCGTTGGTTTTGGATATGTATCCGAAAACCTTTTCAGCATCTCTGACGGGCTGAATGTTTGGGTGGAAACCCTGAACATCAAAGAACTTGGGGTTCCTTGTGCATAGTTTGGTGTTTAGCTGTATAAGGACATGGAGATGCGGGTCCCCGTCCTTATGGAACTCTTGGGATACCTTAATGTATCCTGGAATTTTCTCGGTCAGGCGAGAGAACAATTCCTTCATCAGCTCGGATGGTGTTAGGTTGCAGTGTGGATAGGTAAGGAAGAATTGCTTGCTGTTCCAACGTGGTGTTGGATGGTTTGAAGGACCAGGACGGTTGGATGCTGCAGATGATGCAGGTGCCCTCATCTCTACTACTCTATGGGTGTGGCTCCGATGCTCTCAGAAAACTTGCTACTGGTTTCGCTGGTGCCGGTGCCACCCCTCGTTAGATGGGCTGCGTATTTATAATGGGCCGGCGGGGGAGCGAAACCAATAATATTACCGCTCCCCCTCCCTGGCCCATTAGTAGGCCCCTTGCCTCGGTGCGCTGCGCCTTTGGTCCCCGTTCCTTGCCGCCTTTGGCAGAAGATCGCACTCAGGCTGCTGTAAAATGGCACCGCCATTTGAGTGTTTTTGCTTTGGTGCCTTTGGTTTGCGGCTTTAAAAAGAGGCGGAGGCTCAGAGATCGCACCAAAACCAAAGGTACGCAGGTTGCTTGTCTTCGAACTTGGGTCATTAAGTTTTGCTTCGTTTGTAAGTTTTTAT

Gene Information

NCBI Accession NP_569143.1
Location join(2357-2672,1-89)
Protein Name hypothetical protein
Coding Region ATGGGCTGCGTATTTATAATGGGCCGGCGGGGGAGCGAAACCAATAATATTACCGCTCCCCCTCCCTGGCCCATTAGTAGGCCCCTTGCCTCGGTGCGCTGCGCCTTTGGTCCCCGTTCCTTGCCGCCTTTGGCAGAAGATCGCACTCAGGCTGCTGTAAAATGGCACCGCCATTTGAGTGTTTTTGCTTTGGTGCCTTTGGTTTGCGGCTTTAAAAAGAGGCGGAGGCTCAGAGATCGCACCAAAACCAAAGGTACGCAGGTTGCTTGTCTTCGAACTTGGGTCATTAAGTTTTGCTTCGTTTGTAAGTTTTTATGGATCCCTATGGTAGCCGTCCTAGCCATCCTGATGATGGTGCACTGCATGGTATACTTGTGGCATTTATTGCGGTGCTTTGCCTCATAG
Protein Sequence MGCVFIMGRRGSETNNITAPPPWPISRPLASVRCAFGPRSLPPLAEDRTQAAVKWHRHLSVFALVPLVCGFKKRRRLRDRTKTKGTQVACLRTWVIKFCFVCKFLWIPMVAVLAILMMVHCMVYLWHLLRCFAS

NCBI Accession NP_569144.1
Location join(2671-2672,1-253)
Protein Name hypothetical protein
Coding Region ATGGATCCCTATGGTAGCCGTCCTAGCCATCCTGATGATGGTGCACTGCATGGTATACTTGTGGCATTTATTGCGGTGCTTTGCCTCATAGGTTGCCTTTGGGCAGCATACCGACTGTTCCTTAAGGAGTGCCTTACTGATTGCAGTCAGCACACTTCATCAGGCGTCGTCGCGGGTCCTCGTCCGGCTGCAACAGGTCCTACTGCTGTTGTTGTACATAATGGTGCAGAAGCGCAAAGATCTTCGGCGTTCTGA
Protein Sequence MDPYGSRPSHPDDGALHGILVAFIAVLCLIGCLWAAYRLFLKECLTDCSQHTSSGVVAGPRPAATGPTAVVVHNGAEAQRSSAF

NCBI Accession NP_569145.1
Location 219-986
Protein Name hypothetical protein
Coding Region ATGGTGCAGAAGCGCAAAGATCTTCGGCGTTCTGATGCCGGTTCTGCCGTTCGGGCCAAACTGCATAAGGCCTCGACTGGGAAGGCCTTCCCTGTAGGGAAGCGGGCTCCTCTGCAGATACGGTCCTATGCATGGGAGACGCCTGCCACGGCGACCACCCCTTCCGGACCTATCAGTATTACTGACGGTACCATCTTCATGTGTAACACCATTGACCCTGGGACTGGAGACGATCAGAGATCGCGGCATACCACGATGCTCTATAAGATGTCATTGAACGTGGTGCTCTGGCCTGGTGCGACTACGGCCCAAATAGTTGGGCCTTTCCGCGTGAACTTCTGGCTTGTGTATGATGCTGCCCCGACTGGAGTTGTCCCGAAGCTGACGGACATCTTTGACGTGGCCTATCCGAAGTGGGGAAACACTTGGCAGGTTTCCCGCTCTAATGTGCATAGGTTCATAGTTAAGCGTAAATGGAAGGTGGACTACCAGTCCTCTGGCGTCCCTGTTGGCAAGAGACAGAGCAGCGGTGTTGAATACGCCCCTGTTAATAATGTGGTGGAGTGCAACAAGTTCTTCGAGAAGCTGCGTGTGAAGACCGAATGGGCGAACACCTCTACCGGTGCAATTGGGGACGTGAAGAAGGGTGCGTTGTACCTGTGTGCCAATACCCGGCAGATGCCTGCTGGTGACTCAGTCACCACGAGTTGTACCACCATGATGCAAGGGTCTACCCGATTGTACTTCAAAGTGCTGGGGAACCAGTAA
Protein Sequence MVQKRKDLRRSDAGSAVRAKLHKASTGKAFPVGKRAPLQIRSYAWETPATATTPSGPISITDGTIFMCNTIDPGTGDDQRSRHTTMLYKMSLNVVLWPGATTAQIVGPFRVNFWLVYDAAPTGVVPKLTDIFDVAYPKWGNTWQVSRSNVHRFIVKRKWKVDYQSSGVPVGKRQSSGVEYAPVNNVVECNKFFEKLRVKTEWANTSTGAIGDVKKGALYLCANTRQMPAGDSVTTSCTTMMQGSTRLYFKVLGNQ

NCBI Accession NP_569146.1
Location 1159->1568
Protein Name hypothetical protein
Coding Region CAGCCTAACGGGCCGCGGAGACCACGAAGCATATACATCTGCGGCCCAAGCCGAACTGGAAAGACCACTTGGGCCAGAAACATCGGGAGGCACAACTACTACAACTCAACCGTAGACTTCACACACTATGACAAAGATGCAATCTACAACGTCATCGACGATGTGCCTTTCAAGTTCTTGCCGCAGTGGAAGGCGCTGGTGGGAGCACAGCGTGACTACATAGTGAATCCCAAGTACGGTAAGAAGAAGAAAATCCCTGGGGGAATCCCGTCCATCATTCTAACCAATGACGACGAAGACTGGATCAAGGACATGAAACCTGCACAAGTGGAGTACCTGCACGCGAACGCCCACGTACATTACATGTACGAAGGACAGAAGTTCTACGTCCTGCCGGCCGAAGAGTGA
Protein Sequence QPNGPRRPRSIYICGPSRTGKTTWARNIGRHNYYNSTVDFTHYDKDAIYNVIDDVPFKFLPQWKALVGAQRDYIVNPKYGKKKKIPGGIPSIILTNDDEDWIKDMKPAQVEYLHANAHVHYMYEGQKFYVLPAEE

NCBI Accession NP_569147.1
Location 1620-2273
Protein Name hypothetical protein
Coding Region ATGAGGGCACCTGCATCATCTGCAGCATCCAACCGTCCTGGTCCTTCAAACCATCCAACACCACGTTGGAACAGCAAGCAATTCTTCCTTACCTATCCACACTGCAACCTAACACCATCCGAGCTGATGAAGGAATTGTTCTCTCGCCTGACCGAGAAAATTCCAGGATACATTAAGGTATCCCAAGAGTTCCATAAGGACGGGGACCCGCATCTCCATGTCCTTATACAGCTAAACACCAAACTATGCACAAGGAACCCCAAGTTCTTTGATGTTCAGGGTTTCCACCCAAACATTCAGCCCGTCAGAGATGCTGAAAAGGTTTTCGGATACATATCCAAAACCAACGGTGACTCTGATGAAATGGGTGAACTCCAACTCAGGATCAAGAAACCCGAGAAGCCTACCCGTGATCAAAGGATGGCTATGATAATAGCCTCCTCCACCAATAGGAATGAATACCTGTCCATGGTCCGTAAAGAATTCCCATTTGACTGGGCCATCAGACTCCAGCAGTTTGAATACAGTGCAGCAGCCTTGTTTACCGAACCACCTCCGGTATATCAGTCACCGTTCCCAAATGAGCAGATCGTCTGTCCGCCGGAGCTCGTTGACATCATAGACCAGGAATGGAACCAGGTAACTACCGATTAA
Protein Sequence MRAPASSAASNRPGPSNHPTPRWNSKQFFLTYPHCNLTPSELMKELFSRLTEKIPGYIKVSQEFHKDGDPHLHVLIQLNTKLCTRNPKFFDVQGFHPNIQPVRDAEKVFGYISKTNGDSDEMGELQLRIKKPEKPTRDQRMAMIIASSTNRNEYLSMVRKEFPFDWAIRLQQFEYSAAALFTEPPPVYQSPFPNEQIVCPPELVDIIDQEWNQVTTD

References More References in PubMed

1

The nucleotide sequence and genome structure of the geminivirus miscanthus streak virus.

Chatani M, et al.  J Gen Virol. 1991 Oct;72 ( Pt 10):2325-31. doi: 10.1099/0022-1317-72-10-2325.

PMID: 1919519

2

Transposition of the maize Ds element from a viral vector to the rice genome.

Sugimoto K, et al.  Plant J. 1994 Jun;5(6):863-71. doi: 10.1046/j.1365-313x.1994.5060863.x.

PMID: 8054991

3

Molecular cloning and physical mapping of the DNA of Miscanthus streak geminivirus.

Ikegami M, et al.  Intervirology. 1989;30(6):340-5. doi: 10.1159/000150112.

PMID: 2621064