Eragrostis minor streak virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000893655.1
Isolate Namibia
Release date 2015/2/22
Submitter Varsani,A., Linderme,D., Lefeuvre,P., Martin,D.P.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_015553
ATGAGTTCTTTAAGTGGCCCTATTCCTATATCTCCTTGTCCTAGCCGTTCGAGCAGTAGCTTCGACGGTGCCCTGCATGCGTTGCTAATAGCCTTTGTTGGCTTGTTATTGCTCATAGGGAGTTGCTGGGCTGCATTTAGTTTGTTCGGCCGGGAGTTGCTTGCCATCAGGGCCAGACAGCCCGTAAGGACGCTGTCGCAGGAAGAAGCCCAGTTGCCAAGGCCCGCTCCGTCCGCTCCTCTCGAGCCTGTTCGTCGAGATGGTTTACGAGCGCAAGCGGAAAGATCCCCGGCGTTCTGATGAGTCCGCTGGCTCTGCCCGCAAGAGGCCTAGGGCCCCTGCTGGACGTTCAATGGTTTCGGCCGTTAGACGGCCGGCTCTTCAGATTCGGGAGTACCCCTGGCAGACCTTGACGCAGTTGCCTATTAAGATCACCGATGGTGTCATTTTCATGGTGAATACCATAGACCCGGGTACCGGGGATGATCAGAGGTCGAAGCACCAGACGATGCTGTACAAGATGAGCTTCAATTGCGTTCTCTGGCCGGACGAGACTACGGCGTTGATTGTTGCCCCTTTCAGGGTTAACTTCTGGTTGGTGTATGATGCTGCGCCGCAGGGGAAACTGCCGGCTCTGTCCGACATCTTCAGCGTGCCCTATACCAAGTGGGGTAATACCTGGAATGTTAGCCGCACTAATGTGCATAGGTTCGTGGTGAAGCGCAAGTGGCATGTGGATTACAACAGTTCTGGTACAGCCGTTGGGAAGAAACAGTCTCCGGGGTCGGAGGATTTCCCCGTGAAGAACGTGGTCGAGTGCAACAAGTTCTTCGAGAAGCTGCGTGTTAAGACCGAGTGGCTTAACACCACCGATGGTACTATCGGGTCTGTTAAAAAGGGTGCTTTGTATTTGGTTGCAAATACCCGTCAGATGCCTGCTGGTGACGCAGTCACCACAACCTGTACTACTTACATGCAAGGTTCTACCCGATTGTACTTCAAGTCGCTGGGTTACCAGTGATAATAAAAAAGTTGTTGTTCAAACCTTGACTTTATTCAATTGAAAATTGATACATGGTGCGCAGTCCGCGCAACGAAAAAAACACACTTAGGTTTGTGTGTCGCGAGGGGGAACCCGGAGCACGCACCCAAACCGTTACAAACATAAAACACACCCAAACTACATTTATTAAACATCCTGGCCGGCTGCTTCTGCCTTGTAGAACTTCGTTCCCTCGTACATGTAATGTACGTGTGAGTTGGCGTGGAGGTACTCCGCCTGAGCAGGCTTCATCTCTCCGAGCCAGTCTTCGTCGTCATTTGTTAAAATGATGGAGGGAATCCCGCCCTTGATTTTCTTCTTCTTGCCGTATTTTGGGTTTACTATGTAGTCGCGTTGGGCACCTACGAGTGCCTTCCACTGTGGACAGTACTTGAAAGGGACGTCGTCGATGACGTTGTACTCCGCTTGAGGGTCGTAGTGTGTGAAGTCTAAGACGGAGTTGTAGTAGTTATGGCGACCTAGGCTTCTAGCCCAAGTCGTCTTTCCAGTACGGGTTGGTCCACAGATGTAGATGCTACGTGGCCTGCCTCCTGGTGCTCCATGCTGATATCCTGCATTTGTTGCAGGTCATCGGCTGCTTGGGAAATTGATGTGCCAGGATGTATTAACGTGTAACTATACGGGGTTACCTGGAACCATTCCGAATTTATGATTTCGGTGATGTCTTCTGGGCACAGAAGTTGGTCTACAGGGAACGGGGAGGTGTACTCTACAGGAGGTTCTGGGAACAGGCTGCTTGCCGAGTACTCGAATTGCATTAGTCTGGTTGCCCAGTCAAATGGAAATTCTTTCCTCACCATTGAGAGGTACTCTTGCTTAGAAGTGGATGACTCTATTATGGCACGCATTCGCTGGTCACGTCCCTCTTGGGCAGTTTTCTTTTTCTTGGGAAGTGTTGGCTTCCCGAAGATGTATTCCTCCCCGTTTTGCTTGGTGATGTACCCTAGCACTTTGGAAGCATCTCTTGCTGGTTGGATGTTGGGATGGAATTTGGTTCCGTGAAGGAACTGGTCGAAGAAGGTTTGTCTACGGGTGAAGAGTTTTTTCTCTAGTTGCACTAGTGCATGGAGATGCGGAAAACCATCCTTGTGCAGTTCTTGGGTTACATGGATGTATTTTGGCTTGTTCTGGATCAGTAGTTGCAACAGCTCGAGACCTAGATCTTTCGGGGAAAGATCGCACCTAGGATAGGTTAGGAAGAGTTGCTTGGAAGAAATTCGGAACCTGGAGCCGTCGGATGAGGATCCAAGGGTGTCTTGGTCCTGAGACATCTTGGTGTCACTGGAACCTGCTCTAGGGGCTCAAAAACTCTCTACTACCTTGCTCGGCGCCGGTGTCACCCCCCGGTGCCCCTCTTTTATATGGGCCGGGCCGGCTTGTTGCGGGGGCGAGCATGATTAATATTACCGCTCGCCCCCACCAGGCCGCTGGTGAGGCCCATTAGGACGGCCCGTCCCCACTCCAAAGGTGACGCCTTTGGGGCAGATCGCACCTTGGGTGCTAGGGTGCACCATCGCTTTGGTGCTTTCGGTGCGGTGCCCTTTGCTTTGTCTATAAGAGGGGAGGCCGCAGTGGCTCTCCCTCACAAAAGCAAAGGTAAGGTTTTATGTTTTGATCCATAGTGCG

Gene Information

NCBI Accession YP_004465362.1
Location 1-300
Protein Name movement protein
Coding Region ATGAGTTCTTTAAGTGGCCCTATTCCTATATCTCCTTGTCCTAGCCGTTCGAGCAGTAGCTTCGACGGTGCCCTGCATGCGTTGCTAATAGCCTTTGTTGGCTTGTTATTGCTCATAGGGAGTTGCTGGGCTGCATTTAGTTTGTTCGGCCGGGAGTTGCTTGCCATCAGGGCCAGACAGCCCGTAAGGACGCTGTCGCAGGAAGAAGCCCAGTTGCCAAGGCCCGCTCCGTCCGCTCCTCTCGAGCCTGTTCGTCGAGATGGTTTACGAGCGCAAGCGGAAAGATCCCCGGCGTTCTGA
Protein Sequence MSSLSGPIPISPCPSRSSSSFDGALHALLIAFVGLLLLIGSCWAAFSLFGRELLAIRARQPVRTLSQEEAQLPRPAPSAPLEPVRRDGLRAQAERSPAF

NCBI Accession YP_004465363.1
Location 260-1021
Protein Name coat protein
Coding Region ATGGTTTACGAGCGCAAGCGGAAAGATCCCCGGCGTTCTGATGAGTCCGCTGGCTCTGCCCGCAAGAGGCCTAGGGCCCCTGCTGGACGTTCAATGGTTTCGGCCGTTAGACGGCCGGCTCTTCAGATTCGGGAGTACCCCTGGCAGACCTTGACGCAGTTGCCTATTAAGATCACCGATGGTGTCATTTTCATGGTGAATACCATAGACCCGGGTACCGGGGATGATCAGAGGTCGAAGCACCAGACGATGCTGTACAAGATGAGCTTCAATTGCGTTCTCTGGCCGGACGAGACTACGGCGTTGATTGTTGCCCCTTTCAGGGTTAACTTCTGGTTGGTGTATGATGCTGCGCCGCAGGGGAAACTGCCGGCTCTGTCCGACATCTTCAGCGTGCCCTATACCAAGTGGGGTAATACCTGGAATGTTAGCCGCACTAATGTGCATAGGTTCGTGGTGAAGCGCAAGTGGCATGTGGATTACAACAGTTCTGGTACAGCCGTTGGGAAGAAACAGTCTCCGGGGTCGGAGGATTTCCCCGTGAAGAACGTGGTCGAGTGCAACAAGTTCTTCGAGAAGCTGCGTGTTAAGACCGAGTGGCTTAACACCACCGATGGTACTATCGGGTCTGTTAAAAAGGGTGCTTTGTATTTGGTTGCAAATACCCGTCAGATGCCTGCTGGTGACGCAGTCACCACAACCTGTACTACTTACATGCAAGGTTCTACCCGATTGTACTTCAAGTCGCTGGGTTACCAGTGA
Protein Sequence MVYERKRKDPRRSDESAGSARKRPRAPAGRSMVSAVRRPALQIREYPWQTLTQLPIKITDGVIFMVNTIDPGTGDDQRSKHQTMLYKMSFNCVLWPDETTALIVAPFRVNFWLVYDAAPQGKLPALSDIFSVPYTKWGNTWNVSRTNVHRFVVKRKWHVDYNSSGTAVGKKQSPGSEDFPVKNVVECNKFFEKLRVKTEWLNTTDGTIGSVKKGALYLVANTRQMPAGDAVTTTCTTYMQGSTRLYFKSLGYQ

NCBI Accession YP_004465364.1
Location 1190-1606,1693-2334
Protein Name replication associated protein
Coding Region ATGTCTCAGGACCAAGACACCCTTGGATCCTCATCCGACGGCTCCAGGTTCCGAATTTCTTCCAAGCAACTCTTCCTAACCTATCCTAGGTGCGATCTTTCCCCGAAAGATCTAGGTCTCGAGCTGTTGCAACTACTGATCCAGAACAAGCCAAAATACATCCATGTAACCCAAGAACTGCACAAGGATGGTTTTCCGCATCTCCATGCACTAGTGCAACTAGAGAAAAAACTCTTCACCCGTAGACAAACCTTCTTCGACCAGTTCCTTCACGGAACCAAATTCCATCCCAACATCCAACCAGCAAGAGATGCTTCCAAAGTGCTAGGGTACATCACCAAGCAAAACGGGGAGGAATACATCTTCGGGAAGCCAACACTTCCCAAGAAAAAGAAAACTGCCCAAGAGGGACGTGACCAGCGAATGCGTGCCATAATAGAGTCATCCACTTCTAAGCAAGAGTACCTCTCAATGGTGAGGAAAGAATTTCCATTTGACTGGGCAACCAGACTAATGCAATTCGAGTACTCGGCAAGCAGCCTGTTCCCAGAACCTCCTGTAGAGTACACCTCCCCGTTCCCTGTAGACCAACTTCTGTGCCCAGAAGACATCACCGAAATCATAAATTCGGAATGGTTCCAGCATGGAGCACCAGGAGGCAGGCCACGTAGCATCTACATCTGTGGACCAACCCGTACTGGAAAGACGACTTGGGCTAGAAGCCTAGGTCGCCATAACTACTACAACTCCGTCTTAGACTTCACACACTACGACCCTCAAGCGGAGTACAACGTCATCGACGACGTCCCTTTCAAGTACTGTCCACAGTGGAAGGCACTCGTAGGTGCCCAACGCGACTACATAGTAAACCCAAAATACGGCAAGAAGAAGAAAATCAAGGGCGGGATTCCCTCCATCATTTTAACAAATGACGACGAAGACTGGCTCGGAGAGATGAAGCCTGCTCAGGCGGAGTACCTCCACGCCAACTCACACGTACATTACATGTACGAGGGAACGAAGTTCTACAAGGCAGAAGCAGCCGGCCAGGATGTTTAA
Protein Sequence MSQDQDTLGSSSDGSRFRISSKQLFLTYPRCDLSPKDLGLELLQLLIQNKPKYIHVTQELHKDGFPHLHALVQLEKKLFTRRQTFFDQFLHGTKFHPNIQPARDASKVLGYITKQNGEEYIFGKPTLPKKKKTAQEGRDQRMRAIIESSTSKQEYLSMVRKEFPFDWATRLMQFEYSASSLFPEPPVEYTSPFPVDQLLCPEDITEIINSEWFQHGAPGGRPRSIYICGPTRTGKTTWARSLGRHNYYNSVLDFTHYDPQAEYNVIDDVPFKYCPQWKALVGAQRDYIVNPKYGKKKKIKGGIPSIILTNDDEDWLGEMKPAQAEYLHANSHVHYMYEGTKFYKAEAAGQDV

NCBI Accession YP_004465365.1
Location 1522-2334
Protein Name RepA
Coding Region ATGTCTCAGGACCAAGACACCCTTGGATCCTCATCCGACGGCTCCAGGTTCCGAATTTCTTCCAAGCAACTCTTCCTAACCTATCCTAGGTGCGATCTTTCCCCGAAAGATCTAGGTCTCGAGCTGTTGCAACTACTGATCCAGAACAAGCCAAAATACATCCATGTAACCCAAGAACTGCACAAGGATGGTTTTCCGCATCTCCATGCACTAGTGCAACTAGAGAAAAAACTCTTCACCCGTAGACAAACCTTCTTCGACCAGTTCCTTCACGGAACCAAATTCCATCCCAACATCCAACCAGCAAGAGATGCTTCCAAAGTGCTAGGGTACATCACCAAGCAAAACGGGGAGGAATACATCTTCGGGAAGCCAACACTTCCCAAGAAAAAGAAAACTGCCCAAGAGGGACGTGACCAGCGAATGCGTGCCATAATAGAGTCATCCACTTCTAAGCAAGAGTACCTCTCAATGGTGAGGAAAGAATTTCCATTTGACTGGGCAACCAGACTAATGCAATTCGAGTACTCGGCAAGCAGCCTGTTCCCAGAACCTCCTGTAGAGTACACCTCCCCGTTCCCTGTAGACCAACTTCTGTGCCCAGAAGACATCACCGAAATCATAAATTCGGAATGGTTCCAGGTAACCCCGTATAGTTACACGTTAATACATCCTGGCACATCAATTTCCCAAGCAGCCGATGACCTGCAACAAATGCAGGATATCAGCATGGAGCACCAGGAGGCAGGCCACGTAGCATCTACATCTGTGGACCAACCCGTACTGGAAAGACGACTTGGGCTAGAAGCCTAG
Protein Sequence MSQDQDTLGSSSDGSRFRISSKQLFLTYPRCDLSPKDLGLELLQLLIQNKPKYIHVTQELHKDGFPHLHALVQLEKKLFTRRQTFFDQFLHGTKFHPNIQPARDASKVLGYITKQNGEEYIFGKPTLPKKKKTAQEGRDQRMRAIIESSTSKQEYLSMVRKEFPFDWATRLMQFEYSASSLFPEPPVEYTSPFPVDQLLCPEDITEIINSEWFQVTPYSYTLIHPGTSISQAADDLQQMQDISMEHQEAGHVASTSVDQPVLERRLGLEA

References More References in PubMed

1

Eragrostis minor streak virus: an Asian streak virus in Africa.

Martin DP, et al.  Arch Virol. 2011 Jul;156(7):1299-303. doi: 10.1007/s00705-011-1026-8. Epub 2011 May 26.

PMID: 21614438
2

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands.

Kraberger S, et al.  Virus Res. 2017 Jun 15;238:171-178. doi: 10.1016/j.virusres.2017.07.001. Epub 2017 Jul 4.

PMID: 28687345