Digitaria streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000838685.1
Release date 2015/2/12
Submitter Donson,J., Accotto,G.P., Boulton,M.I., Mullineaux,P.M., Davies,J.W.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_001478
ATGGAGTGGTACCAGAGTGACACTGGCAATCAAAAGCCTCAAAGTCCCACGCAAGCTCCGTCTTTGCCGTGGAGTCGTCTCGGTGAGATAGCTATATTGACACTATTAGCAGTGCTTTGCATTTACCTGCTTTACATTTGGGTGCTGAGAGATCTTATCTTTGTTGTAAGATCTAACCGAGGACGCGTAGCGGAGGAGCTTGAATTTGGTCCCGCCGAGACAAGGAGCGCTTTGGCACAAAGCGCGGTGGTACCTAGATCTGAAGTTGTCCCGTCACAAGGAGCGGACCCTCCCGCTACTGAAAGCCATCTGCCATGTCTTCATCGATGAAGAGGAAGAGGACCGATGAGGGGAGCGGCTCCCGTCGCTTCACTAAGAAGAAATCCGCCGCGAAGGGGCGGACTAGCTCGTCAAGAGCTATTCGTCCCGCCCTCCAAATTCAAAGTTTTGTGTCTGCAGGTGCAGCCACAATTGCTGTTCCCACTGGCGGAGTATGTCATCTACTGAGCTCCTACAGCCGAGGCTCCGGCGAAGGAGACCGGCACACCAACGAGACTGTCACGTACAAAGCCGCATTCGACTACCACTTCAGTGCTAACGCTGGACCCTGCGCATACTCCAGTATTGGAGTAGGTGTCTTGTGGTTGGTGTATGACGCACAACCCAGTGGTCAGGTACCAGCGGTAACTGACATATTTCCGCATGATACAACCCTACAGTCCTTTCCATACACCTGGAAGGTGGGAAGGGAAGTGTGTCACCGCTTCGTGGTGAAACGCCGGTGGTGTTTCACAATGGAGACCAACGGGCGCATCGGTAGTGACAAACCTCCAAGCAACGCAGTCTGGCCTCCGTGCAAGCGGAGTATTTACTTCCACAAGTTCGCGACAGGACTCGGCGTCAAGACCGAGTGGAAGAATACAACGGATGGTGGCGTAGGCAGCATCAAGAAGGGTGCCCTGTACTTTGTAATAGCCCCTGGCTCGGGCATAGATTTTACACTGTTCGGTACCTGCCGTATGTACTTTAAGAGTGTGGGCAACCAGTAAGGTTGTCCAGAATGAATAAAAACTAGTTTTTATTATTGATTGCGAAGCAATTGCATTACAAAGACGCCGTCAAGCGGCAACTAAAACACACATGACCCCGCGCCGGGCTTAAGACCGGCTCGCTGGGTCACCCTGCGATACATAAAATTAAAAAAAAACACAGATCTGAATTACGCCGGCGCGTCGTCGAGCGAAGCGAGTGACGCTGTAGCTGGCCCTTCTGCGTAGCTGAAGAACCTTTCCCCTTCAGTCATTTTGTAAATGACGGTATTGGCTTCGAAGTACGACAGCTGCGCTGGAGTCATGTCTTTCATCCAATCTTCATCCGGATTGGTGAGGATTATTGATGGTATGGATTTAGAAGCAACACGCTTCTTTTTACCATACTTAGGGTTGACGACGTATTCTTTCTGACAACCAATCAACTGTTTCCAACAAGGACAGAACTTGAATGGTATGTCATCAATGACATTGAACTGGGCTTCCTCGTCATAAGAAGCCCAGTCTACATTATTTTGCCAGTAATTATGTCTACCTAGGCCTCTGGCCCAAGTAGACTTTCCAGTTCTTGTTGGACCGAGGATGTAGAGGCTGCGTTTTCTGACCCCATCCGTGACCTAGTGTAATCAGACATCCATTGTAAGTCAGAGATAGCTTCCTCGCGGGTATAACAGGTAGGGTTCAACAAGCAATAAGCTTCAGCACTGACCTGAAAGAGGTCATTCTGAAGCCAATCTGTGATGGTCTCTTGGCACAAGAGGTCAGGCTCAGACGGAGGATGAGGATTGATGAATGGTGCAGCCTCAACTGGGAACAATCTATCAGCTGAGTACTCGAAGTACGACAGCTTTGTAGCCCAGTCATAAGGCAGAGCCTTCTGCACCATGGAGAGGTACTCTTCCTTTGATGTAGCATGATCAATGATGTCACGCATGACATCGTCCTTATTGTGTTTCTTCTCGGAAGATGAACTCTCCCCAAGAAATGGTGATTTTCTTGGGACAAAAGTACCTCTCTCAAATTTCTCCACTGGGTTTTTCAGTATGTATGTCCTGACCTTGTTGACGCTCTTTGCACTCTGAATATTTGGGTGGAACTCAAGAATGTCAAAGAACCTCTGGTTCGTGGTGTTTACCTGCTTCTCAGTTTGAACCAGTGCATGACTATGCAATGATCCATCTGCATGATGCTCGGATGCAACAAGGATGTAAATGGGATTCCAAGACTTAAGGAGATCCCAGAGATGATCAGCTATGAGCTGAGGAGAGTGATCGCACTTGGAATAGGTCAGGAATGTGTTAGCATTCCTGTGCCTGAATGAACGGTTTGCAGCCATTGGATGAAGAAGGAACGGCTAAGGGAGGCACGGCAGATTTGGGAGCTCTTCAACAAACTCTAGACAGGTGCGCCCTTATGAATCCACCGTCTGCCCTTGGTCTGTTTTATAGGCGTAGCCGCTTAGTTGGGCCAGAGGCCCAATACCATGGGCCGCGGGGGGTGGGGCGCACCACTAATATTACAGCCCCACCCCCTGCGAGCCCTTTAGGGCGAGCGATTTGATTTAAAGTAAGGAGGGGGAAACAAAGTGCCCCGACAGAATAAAAAGCCCGCACCCAGCGGCTATAAATCAGCTCAGCTATTGCGATCCTTAC

Gene Information

NCBI Accession NP_040962.1
Location 1-330
Protein Name movement protein
Coding Region ATGGAGTGGTACCAGAGTGACACTGGCAATCAAAAGCCTCAAAGTCCCACGCAAGCTCCGTCTTTGCCGTGGAGTCGTCTCGGTGAGATAGCTATATTGACACTATTAGCAGTGCTTTGCATTTACCTGCTTTACATTTGGGTGCTGAGAGATCTTATCTTTGTTGTAAGATCTAACCGAGGACGCGTAGCGGAGGAGCTTGAATTTGGTCCCGCCGAGACAAGGAGCGCTTTGGCACAAAGCGCGGTGGTACCTAGATCTGAAGTTGTCCCGTCACAAGGAGCGGACCCTCCCGCTACTGAAAGCCATCTGCCATGTCTTCATCGATGA
Protein Sequence MEWYQSDTGNQKPQSPTQAPSLPWSRLGEIAILTLLAVLCIYLLYIWVLRDLIFVVRSNRGRVAEELEFGPAETRSALAQSAVVPRSEVVPSQGADPPATESHLPCLHR

NCBI Accession NP_040963.1
Location 315-1049
Protein Name coat protein
Coding Region ATGTCTTCATCGATGAAGAGGAAGAGGACCGATGAGGGGAGCGGCTCCCGTCGCTTCACTAAGAAGAAATCCGCCGCGAAGGGGCGGACTAGCTCGTCAAGAGCTATTCGTCCCGCCCTCCAAATTCAAAGTTTTGTGTCTGCAGGTGCAGCCACAATTGCTGTTCCCACTGGCGGAGTATGTCATCTACTGAGCTCCTACAGCCGAGGCTCCGGCGAAGGAGACCGGCACACCAACGAGACTGTCACGTACAAAGCCGCATTCGACTACCACTTCAGTGCTAACGCTGGACCCTGCGCATACTCCAGTATTGGAGTAGGTGTCTTGTGGTTGGTGTATGACGCACAACCCAGTGGTCAGGTACCAGCGGTAACTGACATATTTCCGCATGATACAACCCTACAGTCCTTTCCATACACCTGGAAGGTGGGAAGGGAAGTGTGTCACCGCTTCGTGGTGAAACGCCGGTGGTGTTTCACAATGGAGACCAACGGGCGCATCGGTAGTGACAAACCTCCAAGCAACGCAGTCTGGCCTCCGTGCAAGCGGAGTATTTACTTCCACAAGTTCGCGACAGGACTCGGCGTCAAGACCGAGTGGAAGAATACAACGGATGGTGGCGTAGGCAGCATCAAGAAGGGTGCCCTGTACTTTGTAATAGCCCCTGGCTCGGGCATAGATTTTACACTGTTCGGTACCTGCCGTATGTACTTTAAGAGTGTGGGCAACCAGTAA
Protein Sequence MSSSMKRKRTDEGSGSRRFTKKKSAAKGRTSSSRAIRPALQIQSFVSAGAATIAVPTGGVCHLLSSYSRGSGEGDRHTNETVTYKAAFDYHFSANAGPCAYSSIGVGVLWLVYDAQPSGQVPAVTDIFPHDTTLQSFPYTWKVGREVCHRFVVKRRWCFTMETNGRIGSDKPPSNAVWPPCKRSIYFHKFATGLGVKTEWKNTTDGGVGSIKKGALYFVIAPGSGIDFTLFGTCRMYFKSVGNQ

NCBI Accession NP_040964.1
Location 1220->1666
Protein Name replication-associated protein B
Coding Region GTCACGGATGGGGTCAGAAAACGCAGCCTCTACATCCTCGGTCCAACAAGAACTGGAAAGTCTACTTGGGCCAGAGGCCTAGGTAGACATAATTACTGGCAAAATAATGTAGACTGGGCTTCTTATGACGAGGAAGCCCAGTTCAATGTCATTGATGACATACCATTCAAGTTCTGTCCTTGTTGGAAACAGTTGATTGGTTGTCAGAAAGAATACGTCGTCAACCCTAAGTATGGTAAAAAGAAGCGTGTTGCTTCTAAATCCATACCATCAATAATCCTCACCAATCCGGATGAAGATTGGATGAAAGACATGACTCCAGCGCAGCTGTCGTACTTCGAAGCCAATACCGTCATTTACAAAATGACTGAAGGGGAAAGGTTCTTCAGCTACGCAGAAGGGCCAGCTACAGCGTCACTCGCTTCGCTCGACGACGCGCCGGCGTAA
Protein Sequence VTDGVRKRSLYILGPTRTGKSTWARGLGRHNYWQNNVDWASYDEEAQFNVIDDIPFKFCPCWKQLIGCQKEYVVNPKYGKKKRVASKSIPSIILTNPDEDWMKDMTPAQLSYFEANTVIYKMTEGERFFSYAEGPATASLASLDDAPA

NCBI Accession NP_040965.1
Location 1585-2385
Protein Name replication associated protein A
Coding Region ATGGCTGCAAACCGTTCATTCAGGCACAGGAATGCTAACACATTCCTGACCTATTCCAAGTGCGATCACTCTCCTCAGCTCATAGCTGATCATCTCTGGGATCTCCTTAAGTCTTGGAATCCCATTTACATCCTTGTTGCATCCGAGCATCATGCAGATGGATCATTGCATAGTCATGCACTGGTTCAAACTGAGAAGCAGGTAAACACCACGAACCAGAGGTTCTTTGACATTCTTGAGTTCCACCCAAATATTCAGAGTGCAAAGAGCGTCAACAAGGTCAGGACATACATACTGAAAAACCCAGTGGAGAAATTTGAGAGAGGTACTTTTGTCCCAAGAAAATCACCATTTCTTGGGGAGAGTTCATCTTCCGAGAAGAAACACAATAAGGACGATGTCATGCGTGACATCATTGATCATGCTACATCAAAGGAAGAGTACCTCTCCATGGTGCAGAAGGCTCTGCCTTATGACTGGGCTACAAAGCTGTCGTACTTCGAGTACTCAGCTGATAGATTGTTCCCAGTTGAGGCTGCACCATTCATCAATCCTCATCCTCCGTCTGAGCCTGACCTCTTGTGCCAAGAGACCATCACAGATTGGCTTCAGAATGACCTCTTTCAGGTCAGTGCTGAAGCTTATTGCTTGTTGAACCCTACCTGTTATACCCGCGAGGAAGCTATCTCTGACTTACAATGGATGTCTGATTACACTAGGTCACGGATGGGGTCAGAAAACGCAGCCTCTACATCCTCGGTCCAACAAGAACTGGAAAGTCTACTTGGGCCAGAGGCCTAG
Protein Sequence MAANRSFRHRNANTFLTYSKCDHSPQLIADHLWDLLKSWNPIYILVASEHHADGSLHSHALVQTEKQVNTTNQRFFDILEFHPNIQSAKSVNKVRTYILKNPVEKFERGTFVPRKSPFLGESSSSEKKHNKDDVMRDIIDHATSKEEYLSMVQKALPYDWATKLSYFEYSADRLFPVEAAPFINPHPPSEPDLLCQETITDWLQNDLFQVSAEAYCLLNPTCYTREEAISDLQWMSDYTRSRMGSENAASTSSVQQELESLLGPEA

References More References in PubMed

1

Twenty years of evolution and diversification of digitaria streak virus in Digitaria setigera.

Ortega-Del Campo S, et al.  Virus Evol. 2021 Oct 13;7(2):veab083. doi: 10.1093/ve/veab083. eCollection 2021.

PMID: 34659796

2

Mapping of Digitaria streak virus transcripts reveals different RNA species from the same transcription unit.

Accotto GP, et al.  EMBO J. 1989 Apr;8(4):1033-9. doi: 10.1002/j.1460-2075.1989.tb03470.x.

PMID: 2472960

3

A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus.

Oluwafemi S, et al.  Arch Virol. 2014 Oct;159(10):2765-70. doi: 10.1007/s00705-014-2090-7. Epub 2014 May 6.

PMID: 24796552

4

Agrobacterium-mediated infectivity of cloned digitaria streak virus DNA.

Donson J, et al.  Virology. 1988 Jan;162(1):248-50. doi: 10.1016/0042-6822(88)90416-3.

PMID: 3341112

5

Processing of complementary sense RNAs of Digitaria streak virus in its host and in transgenic tobacco.

Mullineaux PM, et al.  Nucleic Acids Res. 1990 Dec 25;18(24):7259-65. doi: 10.1093/nar/18.24.7259.

PMID: 2175430

6

Digitaria streak geminivirus replicative forms are abundant in S-phase nuclei of infected cells.

Accotto GP, et al.  Virology. 1993 Jul;195(1):257-9. doi: 10.1006/viro.1993.1369.

PMID: 8317101

7

Splicing features in maize streak virus virion- and complementary-sense gene expression.

Wright EA, et al.  Plant J. 1997 Dec;12(6):1285-97. doi: 10.1046/j.1365-313x.1997.12061285.x.

PMID: 9450342

8

Corrigenda: Mapping of Digitaria streak virus transcripts reveals different RNA species from the same transcription unit.

[No authors listed]  EMBO J. 1989 Nov;8(11):3542. doi: 10.1002/j.1460-2075.1989.tb08520.x.

PMID: 16453907

9

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands.

Kraberger S, et al.  Virus Res. 2017 Jun 15;238:171-178. doi: 10.1016/j.virusres.2017.07.001. Epub 2017 Jul 4.

PMID: 28687345

10

Inhibition of maize streak virus (MSV) replication by transient and transgenic expression of MSV replication-associated protein mutants.

Shepherd DN, et al.  J Gen Virol. 2007 Jan;88(Pt 1):325-336. doi: 10.1099/vir.0.82338-0.

PMID: 17170465