Digitaria streak virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000838685.1 |
| Release date |
2015/2/12 |
| Submitter |
Donson,J., Accotto,G.P., Boulton,M.I., Mullineaux,P.M., Davies,J.W. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGGAGTGGTACCAGAGTGACACTGGCAATCAAAAGCCTCAAAGTCCCACGCAAGCTCCGTCTTTGCCGTGGAGTCGTCTCGGTGAGATAGCTATATTGACACTATTAGCAGTGCTTTGCATTTACCTGCTTTACATTTGGGTGCTGAGAGATCTTATCTTTGTTGTAAGATCTAACCGAGGACGCGTAGCGGAGGAGCTTGAATTTGGTCCCGCCGAGACAAGGAGCGCTTTGGCACAAAGCGCGGTGGTACCTAGATCTGAAGTTGTCCCGTCACAAGGAGCGGACCCTCCCGCTACTGAAAGCCATCTGCCATGTCTTCATCGATGAAGAGGAAGAGGACCGATGAGGGGAGCGGCTCCCGTCGCTTCACTAAGAAGAAATCCGCCGCGAAGGGGCGGACTAGCTCGTCAAGAGCTATTCGTCCCGCCCTCCAAATTCAAAGTTTTGTGTCTGCAGGTGCAGCCACAATTGCTGTTCCCACTGGCGGAGTATGTCATCTACTGAGCTCCTACAGCCGAGGCTCCGGCGAAGGAGACCGGCACACCAACGAGACTGTCACGTACAAAGCCGCATTCGACTACCACTTCAGTGCTAACGCTGGACCCTGCGCATACTCCAGTATTGGAGTAGGTGTCTTGTGGTTGGTGTATGACGCACAACCCAGTGGTCAGGTACCAGCGGTAACTGACATATTTCCGCATGATACAACCCTACAGTCCTTTCCATACACCTGGAAGGTGGGAAGGGAAGTGTGTCACCGCTTCGTGGTGAAACGCCGGTGGTGTTTCACAATGGAGACCAACGGGCGCATCGGTAGTGACAAACCTCCAAGCAACGCAGTCTGGCCTCCGTGCAAGCGGAGTATTTACTTCCACAAGTTCGCGACAGGACTCGGCGTCAAGACCGAGTGGAAGAATACAACGGATGGTGGCGTAGGCAGCATCAAGAAGGGTGCCCTGTACTTTGTAATAGCCCCTGGCTCGGGCATAGATTTTACACTGTTCGGTACCTGCCGTATGTACTTTAAGAGTGTGGGCAACCAGTAAGGTTGTCCAGAATGAATAAAAACTAGTTTTTATTATTGATTGCGAAGCAATTGCATTACAAAGACGCCGTCAAGCGGCAACTAAAACACACATGACCCCGCGCCGGGCTTAAGACCGGCTCGCTGGGTCACCCTGCGATACATAAAATTAAAAAAAAACACAGATCTGAATTACGCCGGCGCGTCGTCGAGCGAAGCGAGTGACGCTGTAGCTGGCCCTTCTGCGTAGCTGAAGAACCTTTCCCCTTCAGTCATTTTGTAAATGACGGTATTGGCTTCGAAGTACGACAGCTGCGCTGGAGTCATGTCTTTCATCCAATCTTCATCCGGATTGGTGAGGATTATTGATGGTATGGATTTAGAAGCAACACGCTTCTTTTTACCATACTTAGGGTTGACGACGTATTCTTTCTGACAACCAATCAACTGTTTCCAACAAGGACAGAACTTGAATGGTATGTCATCAATGACATTGAACTGGGCTTCCTCGTCATAAGAAGCCCAGTCTACATTATTTTGCCAGTAATTATGTCTACCTAGGCCTCTGGCCCAAGTAGACTTTCCAGTTCTTGTTGGACCGAGGATGTAGAGGCTGCGTTTTCTGACCCCATCCGTGACCTAGTGTAATCAGACATCCATTGTAAGTCAGAGATAGCTTCCTCGCGGGTATAACAGGTAGGGTTCAACAAGCAATAAGCTTCAGCACTGACCTGAAAGAGGTCATTCTGAAGCCAATCTGTGATGGTCTCTTGGCACAAGAGGTCAGGCTCAGACGGAGGATGAGGATTGATGAATGGTGCAGCCTCAACTGGGAACAATCTATCAGCTGAGTACTCGAAGTACGACAGCTTTGTAGCCCAGTCATAAGGCAGAGCCTTCTGCACCATGGAGAGGTACTCTTCCTTTGATGTAGCATGATCAATGATGTCACGCATGACATCGTCCTTATTGTGTTTCTTCTCGGAAGATGAACTCTCCCCAAGAAATGGTGATTTTCTTGGGACAAAAGTACCTCTCTCAAATTTCTCCACTGGGTTTTTCAGTATGTATGTCCTGACCTTGTTGACGCTCTTTGCACTCTGAATATTTGGGTGGAACTCAAGAATGTCAAAGAACCTCTGGTTCGTGGTGTTTACCTGCTTCTCAGTTTGAACCAGTGCATGACTATGCAATGATCCATCTGCATGATGCTCGGATGCAACAAGGATGTAAATGGGATTCCAAGACTTAAGGAGATCCCAGAGATGATCAGCTATGAGCTGAGGAGAGTGATCGCACTTGGAATAGGTCAGGAATGTGTTAGCATTCCTGTGCCTGAATGAACGGTTTGCAGCCATTGGATGAAGAAGGAACGGCTAAGGGAGGCACGGCAGATTTGGGAGCTCTTCAACAAACTCTAGACAGGTGCGCCCTTATGAATCCACCGTCTGCCCTTGGTCTGTTTTATAGGCGTAGCCGCTTAGTTGGGCCAGAGGCCCAATACCATGGGCCGCGGGGGGTGGGGCGCACCACTAATATTACAGCCCCACCCCCTGCGAGCCCTTTAGGGCGAGCGATTTGATTTAAAGTAAGGAGGGGGAAACAAAGTGCCCCGACAGAATAAAAAGCCCGCACCCAGCGGCTATAAATCAGCTCAGCTATTGCGATCCTTAC
Gene Information
|
NCBI Accession
|
NP_040962.1
|
|
Location
|
1-330 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGAGTGGTACCAGAGTGACACTGGCAATCAAAAGCCTCAAAGTCCCACGCAAGCTCCGTCTTTGCCGTGGAGTCGTCTCGGTGAGATAGCTATATTGACACTATTAGCAGTGCTTTGCATTTACCTGCTTTACATTTGGGTGCTGAGAGATCTTATCTTTGTTGTAAGATCTAACCGAGGACGCGTAGCGGAGGAGCTTGAATTTGGTCCCGCCGAGACAAGGAGCGCTTTGGCACAAAGCGCGGTGGTACCTAGATCTGAAGTTGTCCCGTCACAAGGAGCGGACCCTCCCGCTACTGAAAGCCATCTGCCATGTCTTCATCGATGA |
|
Protein Sequence
|
MEWYQSDTGNQKPQSPTQAPSLPWSRLGEIAILTLLAVLCIYLLYIWVLRDLIFVVRSNRGRVAEELEFGPAETRSALAQSAVVPRSEVVPSQGADPPATESHLPCLHR |
|
NCBI Accession
|
NP_040963.1
|
|
Location
|
315-1049 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCTTCATCGATGAAGAGGAAGAGGACCGATGAGGGGAGCGGCTCCCGTCGCTTCACTAAGAAGAAATCCGCCGCGAAGGGGCGGACTAGCTCGTCAAGAGCTATTCGTCCCGCCCTCCAAATTCAAAGTTTTGTGTCTGCAGGTGCAGCCACAATTGCTGTTCCCACTGGCGGAGTATGTCATCTACTGAGCTCCTACAGCCGAGGCTCCGGCGAAGGAGACCGGCACACCAACGAGACTGTCACGTACAAAGCCGCATTCGACTACCACTTCAGTGCTAACGCTGGACCCTGCGCATACTCCAGTATTGGAGTAGGTGTCTTGTGGTTGGTGTATGACGCACAACCCAGTGGTCAGGTACCAGCGGTAACTGACATATTTCCGCATGATACAACCCTACAGTCCTTTCCATACACCTGGAAGGTGGGAAGGGAAGTGTGTCACCGCTTCGTGGTGAAACGCCGGTGGTGTTTCACAATGGAGACCAACGGGCGCATCGGTAGTGACAAACCTCCAAGCAACGCAGTCTGGCCTCCGTGCAAGCGGAGTATTTACTTCCACAAGTTCGCGACAGGACTCGGCGTCAAGACCGAGTGGAAGAATACAACGGATGGTGGCGTAGGCAGCATCAAGAAGGGTGCCCTGTACTTTGTAATAGCCCCTGGCTCGGGCATAGATTTTACACTGTTCGGTACCTGCCGTATGTACTTTAAGAGTGTGGGCAACCAGTAA |
|
Protein Sequence
|
MSSSMKRKRTDEGSGSRRFTKKKSAAKGRTSSSRAIRPALQIQSFVSAGAATIAVPTGGVCHLLSSYSRGSGEGDRHTNETVTYKAAFDYHFSANAGPCAYSSIGVGVLWLVYDAQPSGQVPAVTDIFPHDTTLQSFPYTWKVGREVCHRFVVKRRWCFTMETNGRIGSDKPPSNAVWPPCKRSIYFHKFATGLGVKTEWKNTTDGGVGSIKKGALYFVIAPGSGIDFTLFGTCRMYFKSVGNQ |
|
NCBI Accession
|
NP_040964.1
|
|
Location
|
1220->1666 |
|
Protein Name
|
replication-associated protein B |
|
Coding Region
|
GTCACGGATGGGGTCAGAAAACGCAGCCTCTACATCCTCGGTCCAACAAGAACTGGAAAGTCTACTTGGGCCAGAGGCCTAGGTAGACATAATTACTGGCAAAATAATGTAGACTGGGCTTCTTATGACGAGGAAGCCCAGTTCAATGTCATTGATGACATACCATTCAAGTTCTGTCCTTGTTGGAAACAGTTGATTGGTTGTCAGAAAGAATACGTCGTCAACCCTAAGTATGGTAAAAAGAAGCGTGTTGCTTCTAAATCCATACCATCAATAATCCTCACCAATCCGGATGAAGATTGGATGAAAGACATGACTCCAGCGCAGCTGTCGTACTTCGAAGCCAATACCGTCATTTACAAAATGACTGAAGGGGAAAGGTTCTTCAGCTACGCAGAAGGGCCAGCTACAGCGTCACTCGCTTCGCTCGACGACGCGCCGGCGTAA |
|
Protein Sequence
|
VTDGVRKRSLYILGPTRTGKSTWARGLGRHNYWQNNVDWASYDEEAQFNVIDDIPFKFCPCWKQLIGCQKEYVVNPKYGKKKRVASKSIPSIILTNPDEDWMKDMTPAQLSYFEANTVIYKMTEGERFFSYAEGPATASLASLDDAPA |
|
NCBI Accession
|
NP_040965.1
|
|
Location
|
1585-2385 |
|
Protein Name
|
replication associated protein A |
|
Coding Region
|
ATGGCTGCAAACCGTTCATTCAGGCACAGGAATGCTAACACATTCCTGACCTATTCCAAGTGCGATCACTCTCCTCAGCTCATAGCTGATCATCTCTGGGATCTCCTTAAGTCTTGGAATCCCATTTACATCCTTGTTGCATCCGAGCATCATGCAGATGGATCATTGCATAGTCATGCACTGGTTCAAACTGAGAAGCAGGTAAACACCACGAACCAGAGGTTCTTTGACATTCTTGAGTTCCACCCAAATATTCAGAGTGCAAAGAGCGTCAACAAGGTCAGGACATACATACTGAAAAACCCAGTGGAGAAATTTGAGAGAGGTACTTTTGTCCCAAGAAAATCACCATTTCTTGGGGAGAGTTCATCTTCCGAGAAGAAACACAATAAGGACGATGTCATGCGTGACATCATTGATCATGCTACATCAAAGGAAGAGTACCTCTCCATGGTGCAGAAGGCTCTGCCTTATGACTGGGCTACAAAGCTGTCGTACTTCGAGTACTCAGCTGATAGATTGTTCCCAGTTGAGGCTGCACCATTCATCAATCCTCATCCTCCGTCTGAGCCTGACCTCTTGTGCCAAGAGACCATCACAGATTGGCTTCAGAATGACCTCTTTCAGGTCAGTGCTGAAGCTTATTGCTTGTTGAACCCTACCTGTTATACCCGCGAGGAAGCTATCTCTGACTTACAATGGATGTCTGATTACACTAGGTCACGGATGGGGTCAGAAAACGCAGCCTCTACATCCTCGGTCCAACAAGAACTGGAAAGTCTACTTGGGCCAGAGGCCTAG |
|
Protein Sequence
|
MAANRSFRHRNANTFLTYSKCDHSPQLIADHLWDLLKSWNPIYILVASEHHADGSLHSHALVQTEKQVNTTNQRFFDILEFHPNIQSAKSVNKVRTYILKNPVEKFERGTFVPRKSPFLGESSSSEKKHNKDDVMRDIIDHATSKEEYLSMVQKALPYDWATKLSYFEYSADRLFPVEAAPFINPHPPSEPDLLCQETITDWLQNDLFQVSAEAYCLLNPTCYTREEAISDLQWMSDYTRSRMGSENAASTSSVQQELESLLGPEA |