Digitaria didactyla striate mosaic virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000889315.1
Isolate Australia
Release date 2015/2/22
Submitter Briddon,R.W., Martin,D.P., Owor,B.E., Donaldson,L., Markham,P.G., Greber,R.S., Varsani,A., Shepherd,D.N.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014547
TAATATTACCGCCCCCGGCCCATGGCGAGGGCCCTACGCTCAGCAGGGCCCGAGCGGCTTTACCTGCTTTGGTGTTCTTTAACTTGGATTTTCGCAGTGCGATCTGCCATCTGACCGGTTTTGTCTTTTAAAAGACCGCTCCCCCCCTTTGTTTCGAATGGCGACTCCGACATTTGATAGTGCATATTTTAGATCTGGATCTGTGGTTCAAAACCAAGACGGGACAAGCTTTGCTTTCCCGGTGAAGGTGACTGCCCTTGTCTGCATTTCTTCAATTGTAGCGGCCGCAATACTTGTATTTTTATACAAGACCTGTTTACAAGACTGCATAACGCAGTGGAGGCTTACGACATACGGCAGTCACTTTTCATCTGGTTTTGGAGGTACTCATTTGGTGACCTCAGGCCAGCCTGAGAGTAACCATACTCCCATTGTGAGTTTACCTGATAGATCTGCAGTTTCAGTGCCCCCTGTTTCGTTACCTGTTGGTTTGCAAACATCATGAGCCCTGCAGGCTCATATAAGAGGAAGCGCTCCGCCGCTTCGTCTTCAGCGACGCCAAAACGCCGTCGCGTCTATAAACAAGCAGTGAGTCGTCCTCTCTCAAGGAGAGAACCACTGCAGGTGCAAGATTTTACCTGGGAGCAAGATTCGGCGTTCAATGCAGGTGGCTCCGCCTACCTGCTTACAAGTTATGCCCGCGGTTCAGCTGAGAATCAGCGCAAGACCGCGGAGACGATCACCTACAAGGTGGCTATCAACCTTGGTGTTGCTATTAGTGGCACTATGCAACAATACTGTGTGTCGAGCCGGCCAGTGTGCTGGCTCGTTTACGATGCGGCACCGTCCGGCACGGCTGTGACGGCTCAAGAAATTTTCGGATTCCCTGATGGTTTGAAGAACTGGCCAACAACTTGGAAAGTGGCCAGATCGGTGTCCCACCGATTCATAGTGAAACGTCGGTGGGTGTTTACACTGGAGTCCAACGGCTCCAATTTTGCTACGGGGTACTCTAGTAACCCGTGTGCCATACCGCAATCCCTGCCGGTTCTGAACAAGTTCGCAAAGCAACTTGGCGTGCGGACGGAGTGGAAGAACACCGCAGGGGGAGACTTCGGCGACATTAAGAGCGGCGCTCTTTACTTAGTGTTGGCTCCGGCTAACGGATTAACTTTTGTAGCACGCGGAAATATCCGCATGTATTTTAAATCCGTCGGTAATCAGTGATTACCGTTCATGGTTTATGAATAATAAACACAGTTTGATGACAAGCTTGGCAAATTATTATTAAAATGAGGCATTATGCCGATTACAACATGGTTTTGTGTGTCGGGAGGGGGAACCCGGACCACGCACCCAAAACACTTAAATAAAACACACCCAACATTACATTATTAATATGCCGCCCTAGCGGAGAAGCTATGCTTCGACGTCCGACGAAGGAGGAATGAAAGACTCTCCTGCTTGAAGATAGTAGACCACACAGTTGCCGTGAAACCAGTCGGCTTGTTGAGGCGACATGGTTTGTAGCCAGTCTTCATCCTCGTTCGCGAGGATTATTGAAGGTATCCCATTCGGGATAGTCTTCTTTTTACCGTATTTTGGATTTACGGTTATGTCGAACTGGCTACCAACCAACCCCTTCCAACAAGGAACGAACTTGAACGGAATGTCATCTATGACATTATAGATGGCATTTTTATTCCACTCTGTGAGGAAATCTACAGAGTGTTGCCAGTAGTGGTGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGTCCACAGATATATAAGGATCGTCTTCGATGATGCGGACCTCGTTCCTGGTTACATCAGACATCCATTGGAGGTCAAGCTTTGCTTGTTCCTCCGATACTAATGCATGAACACTGTAAGCAGAGACACTTACAGTGAAGAACTCGGTATCGAGCCACTCTCCAATGACCGGATGGTCAGACATGTCGTTGGAGACGAACTGTGGCTGGTATTGTATCGGAGCTTCGGGGAAGAGCGCTTTGGCGCTGTATTCAAACTGTTGGAGACGGATTGCCCAGTCAAACGGAAATGCTTTCCGTATCATGGACAAATATTCGTCCCTGCTTGTGGCGTTAGCCATGATTTGTTTCATTTTTTTGTCACGGGTAAAGGAAGCTAGCTTCCTTTTCCTCGATGCCTTGGGCTTTACGAAGACCCCGTCTTCGTAGAAATCTGCCGGATTTTTCTGACAGTATTCCAGAGTTTTCTCTGGATTTCTTGCCGCCTGAATGTTAGGATGGAATTCAAAGAAATCAAAGTATTTGGCGGATGTGGTTCGGAAAACTTTGTCAAATTGAAGGAACGCATGTAAATGCGGTTCCCCATCTTGATGTAGCTCTTGAGCGATATACATATACTGTATATTATACCGCTTACAAAGTTTTTTGAGAAACGAACCAGCATCCTTTGGAGGGATTGGGCACCTTGGGTATGTCAGGAAGACATGTTGAGAGCGGACGTTGAAGCTTAGCGGCAGACTTGCCGCACTCTCCGAACTTGGATACTCGCCATAAGAGCGAGGATCGAACATGACTGAGTCACTGACAAGCTGGGACGACATAATAAAAGAGGACGTGGCTGAATGGAGAGCCGTAGGATCGTCTTTGAGATCCGATTTGTGAGTGAAACTCTCTTCCTACCAGTTTGCCAATGCCGAGTGCCAACCTACTCTTTTATAGGCCGCCGCCGCGACATGGGCCGAGGGGCAAACCAA

Gene Information

NCBI Accession YP_003915157.1
Location 158-505
Protein Name movement protein
Coding Region ATGGCGACTCCGACATTTGATAGTGCATATTTTAGATCTGGATCTGTGGTTCAAAACCAAGACGGGACAAGCTTTGCTTTCCCGGTGAAGGTGACTGCCCTTGTCTGCATTTCTTCAATTGTAGCGGCCGCAATACTTGTATTTTTATACAAGACCTGTTTACAAGACTGCATAACGCAGTGGAGGCTTACGACATACGGCAGTCACTTTTCATCTGGTTTTGGAGGTACTCATTTGGTGACCTCAGGCCAGCCTGAGAGTAACCATACTCCCATTGTGAGTTTACCTGATAGATCTGCAGTTTCAGTGCCCCCTGTTTCGTTACCTGTTGGTTTGCAAACATCATGA
Protein Sequence MATPTFDSAYFRSGSVVQNQDGTSFAFPVKVTALVCISSIVAAAILVFLYKTCLQDCITQWRLTTYGSHFSSGFGGTHLVTSGQPESNHTPIVSLPDRSAVSVPPVSLPVGLQTS

NCBI Accession YP_003915158.1
Location 502-1227
Protein Name coat protein
Coding Region ATGAGCCCTGCAGGCTCATATAAGAGGAAGCGCTCCGCCGCTTCGTCTTCAGCGACGCCAAAACGCCGTCGCGTCTATAAACAAGCAGTGAGTCGTCCTCTCTCAAGGAGAGAACCACTGCAGGTGCAAGATTTTACCTGGGAGCAAGATTCGGCGTTCAATGCAGGTGGCTCCGCCTACCTGCTTACAAGTTATGCCCGCGGTTCAGCTGAGAATCAGCGCAAGACCGCGGAGACGATCACCTACAAGGTGGCTATCAACCTTGGTGTTGCTATTAGTGGCACTATGCAACAATACTGTGTGTCGAGCCGGCCAGTGTGCTGGCTCGTTTACGATGCGGCACCGTCCGGCACGGCTGTGACGGCTCAAGAAATTTTCGGATTCCCTGATGGTTTGAAGAACTGGCCAACAACTTGGAAAGTGGCCAGATCGGTGTCCCACCGATTCATAGTGAAACGTCGGTGGGTGTTTACACTGGAGTCCAACGGCTCCAATTTTGCTACGGGGTACTCTAGTAACCCGTGTGCCATACCGCAATCCCTGCCGGTTCTGAACAAGTTCGCAAAGCAACTTGGCGTGCGGACGGAGTGGAAGAACACCGCAGGGGGAGACTTCGGCGACATTAAGAGCGGCGCTCTTTACTTAGTGTTGGCTCCGGCTAACGGATTAACTTTTGTAGCACGCGGAAATATCCGCATGTATTTTAAATCCGTCGGTAATCAGTGA
Protein Sequence MSPAGSYKRKRSAASSSATPKRRRVYKQAVSRPLSRREPLQVQDFTWEQDSAFNAGGSAYLLTSYARGSAENQRKTAETITYKVAINLGVAISGTMQQYCVSSRPVCWLVYDAAPSGTAVTAQEIFGFPDGLKNWPTTWKVARSVSHRFIVKRRWVFTLESNGSNFATGYSSNPCAIPQSLPVLNKFAKQLGVRTEWKNTAGGDFGDIKSGALYLVLAPANGLTFVARGNIRMYFKSVGNQ

NCBI Accession YP_003915159.1
Location 1420-1839,1923-2609
Protein Name replication associated protein
Coding Region ATGTCGTCCCAGCTTGTCAGTGACTCAGTCATGTTCGATCCTCGCTCTTATGGCGAGTATCCAAGTTCGGAGAGTGCGGCAAGTCTGCCGCTAAGCTTCAACGTCCGCTCTCAACATGTCTTCCTGACATACCCAAGGTGCCCAATCCCTCCAAAGGATGCTGGTTCGTTTCTCAAAAAACTTTGTAAGCGGTATAATATACAGTATATGTATATCGCTCAAGAGCTACATCAAGATGGGGAACCGCATTTACATGCGTTCCTTCAATTTGACAAAGTTTTCCGAACCACATCCGCCAAATACTTTGATTTCTTTGAATTCCATCCTAACATTCAGGCGGCAAGAAATCCAGAGAAAACTCTGGAATACTGTCAGAAAAATCCGGCAGATTTCTACGAAGACGGGGTCTTCGTAAAGCCCAAGGCATCGAGGAAAAGGAAGCTAGCTTCCTTTACCCGTGACAAAAAAATGAAACAAATCATGGCTAACGCCACAAGCAGGGACGAATATTTGTCCATGATACGGAAAGCATTTCCGTTTGACTGGGCAATCCGTCTCCAACAGTTTGAATACAGCGCCAAAGCGCTCTTCCCCGAAGCTCCGATACAATACCAGCCACAGTTCGTCTCCAACGACATGTCTGACCATCCGGTCATTGGAGAGTGGCTCGATACCGAGTTCTTCACTCAGGAACGAGGTCCGCATCATCGAAGACGATCCTTATATATCTGTGGACCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCACCACTACTGGCAACACTCTGTAGATTTCCTCACAGAGTGGAATAAAAATGCCATCTATAATGTCATAGATGACATTCCGTTCAAGTTCGTTCCTTGTTGGAAGGGGTTGGTTGGTAGCCAGTTCGACATAACCGTAAATCCAAAATACGGTAAAAAGAAGACTATCCCGAATGGGATACCTTCAATAATCCTCGCGAACGAGGATGAAGACTGGCTACAAACCATGTCGCCTCAACAAGCCGACTGGTTTCACGGCAACTGTGTGGTCTACTATCTTCAAGCAGGAGAGTCTTTCATTCCTCCTTCGTCGGACGTCGAAGCATAG
Protein Sequence MSSQLVSDSVMFDPRSYGEYPSSESAASLPLSFNVRSQHVFLTYPRCPIPPKDAGSFLKKLCKRYNIQYMYIAQELHQDGEPHLHAFLQFDKVFRTTSAKYFDFFEFHPNIQAARNPEKTLEYCQKNPADFYEDGVFVKPKASRKRKLASFTRDKKMKQIMANATSRDEYLSMIRKAFPFDWAIRLQQFEYSAKALFPEAPIQYQPQFVSNDMSDHPVIGEWLDTEFFTQERGPHHRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVDFLTEWNKNAIYNVIDDIPFKFVPCWKGLVGSQFDITVNPKYGKKKTIPNGIPSIILANEDEDWLQTMSPQQADWFHGNCVVYYLQAGESFIPPSSDVEA

NCBI Accession YP_003915160.1
Location 1722-2609
Protein Name RepA
Coding Region ATGTCGTCCCAGCTTGTCAGTGACTCAGTCATGTTCGATCCTCGCTCTTATGGCGAGTATCCAAGTTCGGAGAGTGCGGCAAGTCTGCCGCTAAGCTTCAACGTCCGCTCTCAACATGTCTTCCTGACATACCCAAGGTGCCCAATCCCTCCAAAGGATGCTGGTTCGTTTCTCAAAAAACTTTGTAAGCGGTATAATATACAGTATATGTATATCGCTCAAGAGCTACATCAAGATGGGGAACCGCATTTACATGCGTTCCTTCAATTTGACAAAGTTTTCCGAACCACATCCGCCAAATACTTTGATTTCTTTGAATTCCATCCTAACATTCAGGCGGCAAGAAATCCAGAGAAAACTCTGGAATACTGTCAGAAAAATCCGGCAGATTTCTACGAAGACGGGGTCTTCGTAAAGCCCAAGGCATCGAGGAAAAGGAAGCTAGCTTCCTTTACCCGTGACAAAAAAATGAAACAAATCATGGCTAACGCCACAAGCAGGGACGAATATTTGTCCATGATACGGAAAGCATTTCCGTTTGACTGGGCAATCCGTCTCCAACAGTTTGAATACAGCGCCAAAGCGCTCTTCCCCGAAGCTCCGATACAATACCAGCCACAGTTCGTCTCCAACGACATGTCTGACCATCCGGTCATTGGAGAGTGGCTCGATACCGAGTTCTTCACTGTAAGTGTCTCTGCTTACAGTGTTCATGCATTAGTATCGGAGGAACAAGCAAAGCTTGACCTCCAATGGATGTCTGATGTAACCAGGAACGAGGTCCGCATCATCGAAGACGATCCTTATATATCTGTGGACCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCACCACTACTGGCAACACTCTGTAG
Protein Sequence MSSQLVSDSVMFDPRSYGEYPSSESAASLPLSFNVRSQHVFLTYPRCPIPPKDAGSFLKKLCKRYNIQYMYIAQELHQDGEPHLHAFLQFDKVFRTTSAKYFDFFEFHPNIQAARNPEKTLEYCQKNPADFYEDGVFVKPKASRKRKLASFTRDKKMKQIMANATSRDEYLSMIRKAFPFDWAIRLQQFEYSAKALFPEAPIQYQPQFVSNDMSDHPVIGEWLDTEFFTVSVSAYSVHALVSEEQAKLDLQWMSDVTRNEVRIIEDDPYISVDQQELERLLGPEVLELTTTGNTL

References More References in PubMed

1

Paspalum striate mosaic virus: an Australian mastrevirus from Paspalum dilatatum.

Geering AD, et al.  Arch Virol. 2012 Jan;157(1):193-7. doi: 10.1007/s00705-011-1129-2. Epub 2011 Oct 19.

PMID: 22009055
2

Bromus catharticus striate mosaic virus: a new mastrevirus infecting Bromus catharticus from Australia.

Hadfield J, et al.  Arch Virol. 2011 Feb;156(2):335-41. doi: 10.1007/s00705-010-0872-0. Epub 2010 Dec 12.

PMID: 21153747
3

A novel species of mastrevirus (family Geminiviridae) isolated from Digitaria didactyla grass from Australia.

Briddon RW, et al.  Arch Virol. 2010 Sep;155(9):1529-34. doi: 10.1007/s00705-010-0759-0. Epub 2010 Jul 22.

PMID: 20652334