Digitaria didactyla striate mosaic virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000889315.1 |
| Isolate |
Australia |
| Release date |
2015/2/22 |
| Submitter |
Briddon,R.W., Martin,D.P., Owor,B.E., Donaldson,L., Markham,P.G., Greber,R.S., Varsani,A., Shepherd,D.N. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGCCCCCGGCCCATGGCGAGGGCCCTACGCTCAGCAGGGCCCGAGCGGCTTTACCTGCTTTGGTGTTCTTTAACTTGGATTTTCGCAGTGCGATCTGCCATCTGACCGGTTTTGTCTTTTAAAAGACCGCTCCCCCCCTTTGTTTCGAATGGCGACTCCGACATTTGATAGTGCATATTTTAGATCTGGATCTGTGGTTCAAAACCAAGACGGGACAAGCTTTGCTTTCCCGGTGAAGGTGACTGCCCTTGTCTGCATTTCTTCAATTGTAGCGGCCGCAATACTTGTATTTTTATACAAGACCTGTTTACAAGACTGCATAACGCAGTGGAGGCTTACGACATACGGCAGTCACTTTTCATCTGGTTTTGGAGGTACTCATTTGGTGACCTCAGGCCAGCCTGAGAGTAACCATACTCCCATTGTGAGTTTACCTGATAGATCTGCAGTTTCAGTGCCCCCTGTTTCGTTACCTGTTGGTTTGCAAACATCATGAGCCCTGCAGGCTCATATAAGAGGAAGCGCTCCGCCGCTTCGTCTTCAGCGACGCCAAAACGCCGTCGCGTCTATAAACAAGCAGTGAGTCGTCCTCTCTCAAGGAGAGAACCACTGCAGGTGCAAGATTTTACCTGGGAGCAAGATTCGGCGTTCAATGCAGGTGGCTCCGCCTACCTGCTTACAAGTTATGCCCGCGGTTCAGCTGAGAATCAGCGCAAGACCGCGGAGACGATCACCTACAAGGTGGCTATCAACCTTGGTGTTGCTATTAGTGGCACTATGCAACAATACTGTGTGTCGAGCCGGCCAGTGTGCTGGCTCGTTTACGATGCGGCACCGTCCGGCACGGCTGTGACGGCTCAAGAAATTTTCGGATTCCCTGATGGTTTGAAGAACTGGCCAACAACTTGGAAAGTGGCCAGATCGGTGTCCCACCGATTCATAGTGAAACGTCGGTGGGTGTTTACACTGGAGTCCAACGGCTCCAATTTTGCTACGGGGTACTCTAGTAACCCGTGTGCCATACCGCAATCCCTGCCGGTTCTGAACAAGTTCGCAAAGCAACTTGGCGTGCGGACGGAGTGGAAGAACACCGCAGGGGGAGACTTCGGCGACATTAAGAGCGGCGCTCTTTACTTAGTGTTGGCTCCGGCTAACGGATTAACTTTTGTAGCACGCGGAAATATCCGCATGTATTTTAAATCCGTCGGTAATCAGTGATTACCGTTCATGGTTTATGAATAATAAACACAGTTTGATGACAAGCTTGGCAAATTATTATTAAAATGAGGCATTATGCCGATTACAACATGGTTTTGTGTGTCGGGAGGGGGAACCCGGACCACGCACCCAAAACACTTAAATAAAACACACCCAACATTACATTATTAATATGCCGCCCTAGCGGAGAAGCTATGCTTCGACGTCCGACGAAGGAGGAATGAAAGACTCTCCTGCTTGAAGATAGTAGACCACACAGTTGCCGTGAAACCAGTCGGCTTGTTGAGGCGACATGGTTTGTAGCCAGTCTTCATCCTCGTTCGCGAGGATTATTGAAGGTATCCCATTCGGGATAGTCTTCTTTTTACCGTATTTTGGATTTACGGTTATGTCGAACTGGCTACCAACCAACCCCTTCCAACAAGGAACGAACTTGAACGGAATGTCATCTATGACATTATAGATGGCATTTTTATTCCACTCTGTGAGGAAATCTACAGAGTGTTGCCAGTAGTGGTGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGTCCACAGATATATAAGGATCGTCTTCGATGATGCGGACCTCGTTCCTGGTTACATCAGACATCCATTGGAGGTCAAGCTTTGCTTGTTCCTCCGATACTAATGCATGAACACTGTAAGCAGAGACACTTACAGTGAAGAACTCGGTATCGAGCCACTCTCCAATGACCGGATGGTCAGACATGTCGTTGGAGACGAACTGTGGCTGGTATTGTATCGGAGCTTCGGGGAAGAGCGCTTTGGCGCTGTATTCAAACTGTTGGAGACGGATTGCCCAGTCAAACGGAAATGCTTTCCGTATCATGGACAAATATTCGTCCCTGCTTGTGGCGTTAGCCATGATTTGTTTCATTTTTTTGTCACGGGTAAAGGAAGCTAGCTTCCTTTTCCTCGATGCCTTGGGCTTTACGAAGACCCCGTCTTCGTAGAAATCTGCCGGATTTTTCTGACAGTATTCCAGAGTTTTCTCTGGATTTCTTGCCGCCTGAATGTTAGGATGGAATTCAAAGAAATCAAAGTATTTGGCGGATGTGGTTCGGAAAACTTTGTCAAATTGAAGGAACGCATGTAAATGCGGTTCCCCATCTTGATGTAGCTCTTGAGCGATATACATATACTGTATATTATACCGCTTACAAAGTTTTTTGAGAAACGAACCAGCATCCTTTGGAGGGATTGGGCACCTTGGGTATGTCAGGAAGACATGTTGAGAGCGGACGTTGAAGCTTAGCGGCAGACTTGCCGCACTCTCCGAACTTGGATACTCGCCATAAGAGCGAGGATCGAACATGACTGAGTCACTGACAAGCTGGGACGACATAATAAAAGAGGACGTGGCTGAATGGAGAGCCGTAGGATCGTCTTTGAGATCCGATTTGTGAGTGAAACTCTCTTCCTACCAGTTTGCCAATGCCGAGTGCCAACCTACTCTTTTATAGGCCGCCGCCGCGACATGGGCCGAGGGGCAAACCAA
Gene Information
|
NCBI Accession
|
YP_003915157.1
|
|
Location
|
158-505 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGCGACTCCGACATTTGATAGTGCATATTTTAGATCTGGATCTGTGGTTCAAAACCAAGACGGGACAAGCTTTGCTTTCCCGGTGAAGGTGACTGCCCTTGTCTGCATTTCTTCAATTGTAGCGGCCGCAATACTTGTATTTTTATACAAGACCTGTTTACAAGACTGCATAACGCAGTGGAGGCTTACGACATACGGCAGTCACTTTTCATCTGGTTTTGGAGGTACTCATTTGGTGACCTCAGGCCAGCCTGAGAGTAACCATACTCCCATTGTGAGTTTACCTGATAGATCTGCAGTTTCAGTGCCCCCTGTTTCGTTACCTGTTGGTTTGCAAACATCATGA |
|
Protein Sequence
|
MATPTFDSAYFRSGSVVQNQDGTSFAFPVKVTALVCISSIVAAAILVFLYKTCLQDCITQWRLTTYGSHFSSGFGGTHLVTSGQPESNHTPIVSLPDRSAVSVPPVSLPVGLQTS |
|
NCBI Accession
|
YP_003915158.1
|
|
Location
|
502-1227 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGCCCTGCAGGCTCATATAAGAGGAAGCGCTCCGCCGCTTCGTCTTCAGCGACGCCAAAACGCCGTCGCGTCTATAAACAAGCAGTGAGTCGTCCTCTCTCAAGGAGAGAACCACTGCAGGTGCAAGATTTTACCTGGGAGCAAGATTCGGCGTTCAATGCAGGTGGCTCCGCCTACCTGCTTACAAGTTATGCCCGCGGTTCAGCTGAGAATCAGCGCAAGACCGCGGAGACGATCACCTACAAGGTGGCTATCAACCTTGGTGTTGCTATTAGTGGCACTATGCAACAATACTGTGTGTCGAGCCGGCCAGTGTGCTGGCTCGTTTACGATGCGGCACCGTCCGGCACGGCTGTGACGGCTCAAGAAATTTTCGGATTCCCTGATGGTTTGAAGAACTGGCCAACAACTTGGAAAGTGGCCAGATCGGTGTCCCACCGATTCATAGTGAAACGTCGGTGGGTGTTTACACTGGAGTCCAACGGCTCCAATTTTGCTACGGGGTACTCTAGTAACCCGTGTGCCATACCGCAATCCCTGCCGGTTCTGAACAAGTTCGCAAAGCAACTTGGCGTGCGGACGGAGTGGAAGAACACCGCAGGGGGAGACTTCGGCGACATTAAGAGCGGCGCTCTTTACTTAGTGTTGGCTCCGGCTAACGGATTAACTTTTGTAGCACGCGGAAATATCCGCATGTATTTTAAATCCGTCGGTAATCAGTGA |
|
Protein Sequence
|
MSPAGSYKRKRSAASSSATPKRRRVYKQAVSRPLSRREPLQVQDFTWEQDSAFNAGGSAYLLTSYARGSAENQRKTAETITYKVAINLGVAISGTMQQYCVSSRPVCWLVYDAAPSGTAVTAQEIFGFPDGLKNWPTTWKVARSVSHRFIVKRRWVFTLESNGSNFATGYSSNPCAIPQSLPVLNKFAKQLGVRTEWKNTAGGDFGDIKSGALYLVLAPANGLTFVARGNIRMYFKSVGNQ |
|
NCBI Accession
|
YP_003915159.1
|
|
Location
|
1420-1839,1923-2609 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGTCGTCCCAGCTTGTCAGTGACTCAGTCATGTTCGATCCTCGCTCTTATGGCGAGTATCCAAGTTCGGAGAGTGCGGCAAGTCTGCCGCTAAGCTTCAACGTCCGCTCTCAACATGTCTTCCTGACATACCCAAGGTGCCCAATCCCTCCAAAGGATGCTGGTTCGTTTCTCAAAAAACTTTGTAAGCGGTATAATATACAGTATATGTATATCGCTCAAGAGCTACATCAAGATGGGGAACCGCATTTACATGCGTTCCTTCAATTTGACAAAGTTTTCCGAACCACATCCGCCAAATACTTTGATTTCTTTGAATTCCATCCTAACATTCAGGCGGCAAGAAATCCAGAGAAAACTCTGGAATACTGTCAGAAAAATCCGGCAGATTTCTACGAAGACGGGGTCTTCGTAAAGCCCAAGGCATCGAGGAAAAGGAAGCTAGCTTCCTTTACCCGTGACAAAAAAATGAAACAAATCATGGCTAACGCCACAAGCAGGGACGAATATTTGTCCATGATACGGAAAGCATTTCCGTTTGACTGGGCAATCCGTCTCCAACAGTTTGAATACAGCGCCAAAGCGCTCTTCCCCGAAGCTCCGATACAATACCAGCCACAGTTCGTCTCCAACGACATGTCTGACCATCCGGTCATTGGAGAGTGGCTCGATACCGAGTTCTTCACTCAGGAACGAGGTCCGCATCATCGAAGACGATCCTTATATATCTGTGGACCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCACCACTACTGGCAACACTCTGTAGATTTCCTCACAGAGTGGAATAAAAATGCCATCTATAATGTCATAGATGACATTCCGTTCAAGTTCGTTCCTTGTTGGAAGGGGTTGGTTGGTAGCCAGTTCGACATAACCGTAAATCCAAAATACGGTAAAAAGAAGACTATCCCGAATGGGATACCTTCAATAATCCTCGCGAACGAGGATGAAGACTGGCTACAAACCATGTCGCCTCAACAAGCCGACTGGTTTCACGGCAACTGTGTGGTCTACTATCTTCAAGCAGGAGAGTCTTTCATTCCTCCTTCGTCGGACGTCGAAGCATAG |
|
Protein Sequence
|
MSSQLVSDSVMFDPRSYGEYPSSESAASLPLSFNVRSQHVFLTYPRCPIPPKDAGSFLKKLCKRYNIQYMYIAQELHQDGEPHLHAFLQFDKVFRTTSAKYFDFFEFHPNIQAARNPEKTLEYCQKNPADFYEDGVFVKPKASRKRKLASFTRDKKMKQIMANATSRDEYLSMIRKAFPFDWAIRLQQFEYSAKALFPEAPIQYQPQFVSNDMSDHPVIGEWLDTEFFTQERGPHHRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVDFLTEWNKNAIYNVIDDIPFKFVPCWKGLVGSQFDITVNPKYGKKKTIPNGIPSIILANEDEDWLQTMSPQQADWFHGNCVVYYLQAGESFIPPSSDVEA |
|
NCBI Accession
|
YP_003915160.1
|
|
Location
|
1722-2609 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGTCGTCCCAGCTTGTCAGTGACTCAGTCATGTTCGATCCTCGCTCTTATGGCGAGTATCCAAGTTCGGAGAGTGCGGCAAGTCTGCCGCTAAGCTTCAACGTCCGCTCTCAACATGTCTTCCTGACATACCCAAGGTGCCCAATCCCTCCAAAGGATGCTGGTTCGTTTCTCAAAAAACTTTGTAAGCGGTATAATATACAGTATATGTATATCGCTCAAGAGCTACATCAAGATGGGGAACCGCATTTACATGCGTTCCTTCAATTTGACAAAGTTTTCCGAACCACATCCGCCAAATACTTTGATTTCTTTGAATTCCATCCTAACATTCAGGCGGCAAGAAATCCAGAGAAAACTCTGGAATACTGTCAGAAAAATCCGGCAGATTTCTACGAAGACGGGGTCTTCGTAAAGCCCAAGGCATCGAGGAAAAGGAAGCTAGCTTCCTTTACCCGTGACAAAAAAATGAAACAAATCATGGCTAACGCCACAAGCAGGGACGAATATTTGTCCATGATACGGAAAGCATTTCCGTTTGACTGGGCAATCCGTCTCCAACAGTTTGAATACAGCGCCAAAGCGCTCTTCCCCGAAGCTCCGATACAATACCAGCCACAGTTCGTCTCCAACGACATGTCTGACCATCCGGTCATTGGAGAGTGGCTCGATACCGAGTTCTTCACTGTAAGTGTCTCTGCTTACAGTGTTCATGCATTAGTATCGGAGGAACAAGCAAAGCTTGACCTCCAATGGATGTCTGATGTAACCAGGAACGAGGTCCGCATCATCGAAGACGATCCTTATATATCTGTGGACCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCACCACTACTGGCAACACTCTGTAG |
|
Protein Sequence
|
MSSQLVSDSVMFDPRSYGEYPSSESAASLPLSFNVRSQHVFLTYPRCPIPPKDAGSFLKKLCKRYNIQYMYIAQELHQDGEPHLHAFLQFDKVFRTTSAKYFDFFEFHPNIQAARNPEKTLEYCQKNPADFYEDGVFVKPKASRKRKLASFTRDKKMKQIMANATSRDEYLSMIRKAFPFDWAIRLQQFEYSAKALFPEAPIQYQPQFVSNDMSDHPVIGEWLDTEFFTVSVSAYSVHALVSEEQAKLDLQWMSDVTRNEVRIIEDDPYISVDQQELERLLGPEVLELTTTGNTL |