Chloris striate mosaic virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000839545.1
Release date 2015/2/12
Submitter Andersen,M.T., Richardson,K.A., Harbison,S.A., Morris,B.A.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_001466
TAATAAAAGACGACGTGGCTTGATGGACAGCCGTAGGATGTGTTCTGAGATGTGGACTCCGAGCAAAACTATCTCTAATACCAGTTGCCCACCTGCCGAGTGCCCTCTTCGGCTTTTATGGGCCATAACAGGCCGGCTCTTTGCATGGGCGGGGGGGCAACCATAATATTACCGCCCCCCCGGCCCATGCGAGGGCCCATGCTCAACGGGTCCCGAGCGGCTTTGGCTTTCACATGGGCTTGTCCCCCGCGATGCGATCTGCTCTGCCATGCTTTGGCGGCTTTATAAAGCCGTTCTCAGACCTTTGTTTTCCAATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGAGTCCTGCCAGCTCATGGAAGAGGAAGAGGCCCTCTTCTTCCTCCGCTCAGGCGTCTAAGAAGCGCCGCGTGTACAGGCCTGCTGTTTCACGTTCTCTCGCTCGGCGAGAACCTCTGCAGGTGCAAGACTTTGTCTGGGATACAGATGTGGCTTTCAATAGGGGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCTCTGCCGAGAATCAGCGGAAGACCGCTGAGACCATCACGTACAAGGTGGCAGTTAACCTGGGGTGTGCTATCTCCGGGACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTGCTGGATTGTATACGACGCGGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGTTAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCGCCGATGGGTCTTCACCATGGAGTCCAACGGCTCGCGCTTCGACCGTGACTACACCAACCTCCCGGCTGCTATACCGCAGTCCCTTCCCGTTCTGAACAAGTTCGCGAAGCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAAGAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGTCTTTGTAGCCCGCGGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGATTCCCCAGACTTCATTTTCAATAAACTGTGAGAGTTTGCTTGCCAAACAACATAATTTCATTCATAACGATGGCGCAGTATGCGCAATACATTTAAAAGAAGGGCGGACAGGACAAAGGCGGGCGGCTAAGGGAAGCCGCAAGGGGCAACACCACATCCCAAGAATGAGTTTTGGAATATGCAGCCGCTGGCTTCACGCTATTCCGAAGGAATGAAGGTTTCCCCTGGGAGAAGGTGATACACCACGGCGTTGCCGTGAAACCAGTCGACCTGTTGGGTCGACATCGACTGCAGCCAGTCTTCATCCTCGTTTACGAGGATAATACATGGAATCCCGTTGGGGATTCTTTTCTTCTTCCCGTACTTGGGGTTTACCGTCAGGTCATACTGGCTGCCGACGAGTCCCTTCCAACAAGGGACGAACTTGAACGGGATGTCATCAATGATGTTGAACTGGGCCTGGCAGTTCCATTCCTCTAGGAAGTTCACTGAGTGCTGCCAGTAGTGATGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGCCCACAGATGTACAGGCTTCGTCTCCGGACTCCAGGGCTCCAGACCTGGTTAGGTCAGACATCCATTGGAGGTCAATACGTGCTTGTTCCTCCGAAATACCTGCATGCAGACTGAGGGCTTGAGGACTTACAGTATACAGCTCCTGCTGGAGCCATTCTCCTATGACCGGATGGTCGGACATGTCCCTTGACGCGTATGGCGCGGAGTAGGTTTGAGGAGGGTCAGGGAACAGGGCATTTGCACTGTATTGGAATTGCTGTAGGCGTACCGCCCATTCGAAAGGGAAACTCTTTCGAACCATGCTCAGATATTCGTCCCTGGACGTGGCGTTTGCCATGATTTGTTTCATGGTCTTGTCCCTAGAGGCCGACTGGGTCGGACTCCTGTTGACCTTGGGTTTCAGGAATTTTCCAAATTCCCAGCTACTCTCAGGATGTTTCATACAGTATTTCAGAGTACTGGCTGGCTGCCTTGCAGCTTGGATATTTGGATGAAATTCATCCAGGTCAAAGTATTTTGGAGAGGTGGTTCTGAAATTTGCTTCGAGTTGGACGAAGGCATGTAAGTGGGGCTCACCGTCAGCATGGAATTCCCTGGAAATGTAAATATAATTACATTTCTTATTTTTTAGACGGTCAGCAATTTTCTGACCAGCCTCTTCGGGACTGATAGGACACCTGGGATAGGTGAGGAAGACATGTTTAGTCCTCAGGGAGAAGGCCTTCTCCCCAGGCGTCACTTGCCCTCCGCGAGATGGCACTTGTACGGAAGTGCCACTTCCCTCCCCCTCGCTCTCACTGACAGGCAGGGACGACA

Gene Information

NCBI Accession NP_597785.2
Location 1864-2748,1->126
Protein Name putative Rep A
Coding Region ATGGCCCATAAAAGCCGAAGAGGGCACTCGGCAGGTGGGCAACTGGTATTAGAGATAGTTTTGCTCGGAGTCCACATCTCAGAACACATCCTACGGCTGTCCATCAAGCCACGTCGTCTTTTATTATCGTCCCTGCCTGTCAGTGAGAGCGAGGGGGAGGGAAGTGGCACTTCCGTACAAGTGCCATCTCGCGGAGGGCAAGTGACGCCTGGGGAGAAGGCCTTCTCCCTGAGGACTAAACATGTCTTCCTCACCTATCCCAGGTGTCCTATCAGTCCCGAAGAGGCTGGTCAGAAAATTGCTGACCGTCTAAAAAATAAGAAATGTAATTATATTTACATTTCCAGGGAATTCCATGCTGACGGTGAGCCCCACTTACATGCCTTCGTCCAACTCGAAGCAAATTTCAGAACCACCTCTCCAAAATACTTTGACCTGGATGAATTTCATCCAAATATCCAAGCTGCAAGGCAGCCAGCCAGTACTCTGAAATACTGTATGAAACATCCTGAGAGTAGCTGGGAATTTGGAAAATTCCTGAAACCCAAGGTCAACAGGAGTCCGACCCAGTCGGCCTCTAGGGACAAGACCATGAAACAAATCATGGCAAACGCCACGTCCAGGGACGAATATCTGAGCATGGTTCGAAAGAGTTTCCCTTTCGAATGGGCGGTACGCCTACAGCAATTCCAATACAGTGCAAATGCCCTGTTCCCTGACCCTCCTCAAACCTACTCCGCGCCATACGCGTCAAGGGACATGTCCGACCATCCGGTCATAGGAGAATGGCTCCAGCAGGAGCTGTATACTGTAAGTCCTCAAGCCCTCAGTCTGCATGCAGGTATTTCGGAGGAACAAGCACGTATTGACCTCCAATGGATGTCTGACCTAACCAGGTCTGGAGCCCTGGAGTCCGGAGACGAAGCCTGTACATCTGTGGGCCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCATCACTACTGGCAGCACTCAGTGA
Protein Sequence MAHKSRRGHSAGGQLVLEIVLLGVHISEHILRLSIKPRRLLLSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTYPRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFDLDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMANATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEWLQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSVGQQELERLLGPEVLELITTGSTQ

NCBI Accession NP_040950.1
Location 234-656
Protein Name Hypothetical 14.5 KDa protein
Coding Region ATGGGCTTGTCCCCCGCGATGCGATCTGCTCTGCCATGCTTTGGCGGCTTTATAAAGCCGTTCTCAGACCTTTGTTTTCCAATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGA
Protein Sequence MGLSPAMRSALPCFGGFIKPFSDLCFPMQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASVDLPSVSRVS

NCBI Accession NP_040951.1
Location 315-656
Protein Name Hypothetical 11.7 KDa protein
Coding Region ATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGA
Protein Sequence MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASVDLPSVSRVS

NCBI Accession NP_040952.1
Location 653-1378
Protein Name coat protein
Coding Region ATGAGTCCTGCCAGCTCATGGAAGAGGAAGAGGCCCTCTTCTTCCTCCGCTCAGGCGTCTAAGAAGCGCCGCGTGTACAGGCCTGCTGTTTCACGTTCTCTCGCTCGGCGAGAACCTCTGCAGGTGCAAGACTTTGTCTGGGATACAGATGTGGCTTTCAATAGGGGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCTCTGCCGAGAATCAGCGGAAGACCGCTGAGACCATCACGTACAAGGTGGCAGTTAACCTGGGGTGTGCTATCTCCGGGACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTGCTGGATTGTATACGACGCGGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGTTAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCGCCGATGGGTCTTCACCATGGAGTCCAACGGCTCGCGCTTCGACCGTGACTACACCAACCTCCCGGCTGCTATACCGCAGTCCCTTCCCGTTCTGAACAAGTTCGCGAAGCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAAGAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGTCTTTGTAGCCCGCGGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGA
Protein Sequence MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDFVWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSRPVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNGSRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANGAVFVARGNVRVYFKSVGNQ

NCBI Accession NP_899201.1
Location 1577->1987
Protein Name putative Rep B
Coding Region CCTAACCAGGTCTGGAGCCCTGGAGTCCGGAGACGAAGCCTGTACATCTGTGGGCCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCATCACTACTGGCAGCACTCAGTGAACTTCCTAGAGGAATGGAACTGCCAGGCCCAGTTCAACATCATTGATGACATCCCGTTCAAGTTCGTCCCTTGTTGGAAGGGACTCGTCGGCAGCCAGTATGACCTGACGGTAAACCCCAAGTACGGGAAGAAGAAAAGAATCCCCAACGGGATTCCATGTATTATCCTCGTAAACGAGGATGAAGACTGGCTGCAGTCGATGTCGACCCAACAGGTCGACTGGTTTCACGGCAACGCCGTGGTGTATCACCTTCTCCCAGGGGAAACCTTCATTCCTTCGGAATAG
Protein Sequence PNQVWSPGVRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVNFLEEWNCQAQFNIIDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQVDWFHGNAVVYHLLPGETFIPSE

References More References in PubMed

1

Nucleotide sequence of the geminivirus chloris striate mosaic virus.

Andersen MT, et al.  Virology. 1988 Jun;164(2):443-9. doi: 10.1016/0042-6822(88)90558-2.

PMID: 3369088
2

The composition of Chloris striate mosaic virus, A geminivirus.

Francki RI, et al.  Virology. 1980 Feb;101(1):233-41. doi: 10.1016/0042-6822(80)90498-5.

PMID: 18631638
3

Computer analysis between nucleotide and amino acid sequences of bean golden mosaic virus and those of maize streak, wheat dwarf, chloris striate mosaic, and beet curly top viruses.

Ikegami M.  Microbiol Immunol. 1989;33(10):863-9. doi: 10.1111/j.1348-0421.1989.tb00972.x.

PMID: 2615677
4

The fine structure of chloris striate mosaic virus.

Hatta T, et al.  Virology. 1979 Jan 30;92(2):428-35. doi: 10.1016/0042-6822(79)90147-8.

PMID: 425323
5

The activity of the coat protein promoter of chloris striate mosaic virus is enhanced by its own and C1-C2 gene products.

Zhan X, et al.  Virology. 1993 Mar;193(1):498-502. doi: 10.1006/viro.1993.1153.

PMID: 8438584
6

A novel species of mastrevirus (family Geminiviridae) isolated from Digitaria didactyla grass from Australia.

Briddon RW, et al.  Arch Virol. 2010 Sep;155(9):1529-34. doi: 10.1007/s00705-010-0759-0. Epub 2010 Jul 22.

PMID: 20652334
7

Characterization of the sugarcane streak agent as a distinct geminivirus.

Hughes FL, et al.  Intervirology. 1991;32(1):19-27. doi: 10.1159/000150181.

PMID: 2016148