Plantago lanceolata latent virus

Basic Information

Genus Capulavirus
NCBI Assembly GCF_002824765.1
Isolate Finland: Aland archipelago
Release date 2018/8/25
Submitter Bernardo,P., Muhire,B., Francois,S., Deshoux,M., Hartnady,P., Farkas,K., Kraberger,S., Filloux,D., Fernandez,E., Galzi,S., Ferdinand,R., Granier,M., Marais,A., Monge Blasco,P., Candresse,T., Escriu,F., Varsani,A., Harkins,G.W., Martin,D.P., Roumagnac,P., Frilander,M.J., Monge,P., Peterschmitt,M., Laine,A.L.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038477
TAATATTACTGAAGTCCGCTGTGGGCCCCACCTTATCGTATTGGTCAAAAATGATGGGCCCTGCGAATCTGTTTTTTGAGTGACGTGTTTAATATGTCACGTATTTGGGACAGTATTTATACAATGATCTGCAGTATCTGTGATATTTGTATACAAATTTCTGACAGAAGCTAGTATTGTATGGAATACTGTTCCGAAGTACTCTTCTGGACGTATTTTTTGATAATTACTATTTATTTTGCATTGATATTATATTTCAATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGAGCGTTGGAGCGTTAAAGTAGCGCGGTTTGAAGAAATTCTTCAAGCGGCTATAAATACGTCACGTTTGGGGCGTATTGAGTACGAGATCGAATCGCGAATTGTTAAGGACAATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAGGGTTGGCAGTGGTTATAGGCGACGTTGGAGTAGACGTCGTCGTATTGTTAGGCGTAAAGGTGTTTATGCAAGGCACAGATCTCAGTCTGTGTTACATTCCCTGTCTAATGCGACAGCAACGAAGGGAAAGGCTGGTTATGGATGGCATTTGAACGAGATACCTTTGGGTTCTTCTTACCCCGAGCGACATAGTGATAAAGTGAAGGTGAAGTCATTTAGGTTCCGTATGCAATTTAGAGATGGTGCTAACGGAGGAACCAATGCTGCAAATGTTCATAACCTATATCTTTATCTTGTGAAAGATAATAGTGGGGGTACCGAAGTTCCGTCATTCGATAAGATAGCAATGATGGACTACGGTAATGTTGCAACTGCAATTATCGACCACGATTCAGAGAAGAGATTCACTATTGTTAGGCAATGGAAGTATACTTTTACCGGGTCTTGTAATTCGCAATATCCCGGTAAAGATAGGATTGATTTTAACGACGTTGTTTACATTAATGTAGATACGGAGTTTAAGTCTGCGACAGATGGTAAGTATGCAAATACCCAAAAGAATGCTTGGGTTTTGTATATTATACCGCAGAGTTATGACTGTGTAATTGACGGACATGTTAATGTTCGTTTTGAATCGTTGGTGTAACTAAATATTTGTGAAATAAAAAGTTTATCTTTGGTGTATTTAACAAATATTTTGTTTTTGGGGGGTTAAAGTGTAAAAAAATTGTACTTGGTGTTGCCATTTGTAAAAAAATTGAAGGAAAAAAATGTTGCCCCGTGTATACAATAGAATAATTGGAGCCCGCGTGAGCGGGTGGAAGAACTTTTCAATAAAAGGGCTGTTGTATTTCTATATGTAATACGTTACATACAGACCATTCGTACATCTCATGTAGCTGTAGTGCAGCTCTGTACGATTGGTCTGGGTTACATAGTACTATAGTTGGAATTCCTCCGGGCACTTTTGTTTTTTTACGGTATTTTTCATTTACCGTAAAATCTTTTTGTGCTCCGAGGATTTCTTTTTTACATGGTAAAAACTGAAATGGAATATCATCTATTACATTATACATAGCGTGTTTGTCATACGCGCTCCAGTCCACACTTCCGCAGTAGTAATTGTGTCGGCCCAGTGATCTAGCCCATGCTGTTTTACCTGTTTTGGATGGGCCTTCAATGATTAATGTGATGGGCCTATCAGGTCTGTGGTCCTGCATCAGAAACAGTAATGGGCTGTTGTGAGTTCAACAGTAGTTGTTCTTCTAATTCTTCTTGGGCCGTATTTGAGGCCCAATCCAGATCTGCATGTTCAATATCTGGATCAATTAGTTGCATACTGTTGAAACTTACTGTGTAGAGGTTTGTTTCGGCCCATTGTTTAATGGGCTCAGGTAAATTAGGGAAAGCCCTGTATCTGGGTTCATACAGTACAGGGGGTTCTGGCCATCTGGAATTGGCTGCGTACTCCAGGTTGCGTAACTGTGTTGCCCATGTGTAGGGCTGTTCCGACTGGACTCTGGCGAGGAAGTCGGGCTTGGATGTAGACTCCTGGAGTATAGCAGTCCAGATTGTATCCCTAGACTTCTTAGGGCTACGTCTTGTAGCCTTAAGTACGCCTCGTTCGACGAAGTTTCCGTCCTTGGCGATGTAGTCGGCGACGTGGGCGTCGCTTCTGGGTACCTGGATATTGGGGTGGTGTGGTTGAGCATCACCACTGGTAATAGTGTTTGCGGTGGTGATGTCGAAGTATTTTGGGTCTCTGGTGGTGAGTCGCTTTGCGAGTTGGACGAGACAGTGGAGGTGTTTCGTTCCATCCTGATGATTTTCCTGACAAACTCTGGCATAAAAAATATCATAATTTTTTAATAGATTATATAAATAATCTAGTACGGATGTTGGTGTTAAATCGCATTTTGGGTAAGTTAGGAAAGCCGACTTACCCTGAAATCGGTATGTTAGTGGTTGACGTGGCATATTTCTAGAGAGAGAAATATTGTAGGGGTATTTTGGGTGGAAAAAAAAATAGGCTGAAAATGGTGTTTCCAGAGGGTTTTCAGACTAGTTTCGTGTTTAACAATGAAGTGAGCCGCGTAGCCAATTTATAGTAGTGAGCCAATGAGGCGAATTTAGCGAGAATTTGGAATCCGTAAATCTGGGCCGTTGATTGGATGTGTGGATGGATTAGTGCCACGTGGCGGGTACTGTGGGCGGCGGACTTCATA

Gene Information

NCBI Accession YP_009506569.1
Location 181-441
Protein Name V4
Coding Region ATGGAATACTGTTCCGAAGTACTCTTCTGGACGTATTTTTTGATAATTACTATTTATTTTGCATTGATATTATATTTCAATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGA
Protein Sequence MEYCSEVLFWTYFLIITIYFALILYFNGKTLLLGRRITEQLREVNCYCREAMASRPGEARVGEFTNSAGRLVPSSSCRLSKIPEEG

NCBI Accession YP_009506570.1
Location 260-607
Protein Name V3
Coding Region ATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGAGCGTTGGAGCGTTAAAGTAGCGCGGTTTGAAGAAATTCTTCAAGCGGCTATAAATACGTCACGTTTGGGGCGTATTGAGTACGAGATCGAATCGCGAATTGTTAAGGACAATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAG
Protein Sequence MAKRFYLVDELPSSYGKLIAIAGRQWLQDQEKRALENSLIRQADLYRQVRVGFQKSQKRGERWSVKVARFEEILQAAINTSRLGRIEYEIESRIVKDNGEAKEEYWCDYDLCEAE

NCBI Accession YP_009506571.1
Location 552-1253
Protein Name coat protein
Coding Region ATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAGGGTTGGCAGTGGTTATAGGCGACGTTGGAGTAGACGTCGTCGTATTGTTAGGCGTAAAGGTGTTTATGCAAGGCACAGATCTCAGTCTGTGTTACATTCCCTGTCTAATGCGACAGCAACGAAGGGAAAGGCTGGTTATGGATGGCATTTGAACGAGATACCTTTGGGTTCTTCTTACCCCGAGCGACATAGTGATAAAGTGAAGGTGAAGTCATTTAGGTTCCGTATGCAATTTAGAGATGGTGCTAACGGAGGAACCAATGCTGCAAATGTTCATAACCTATATCTTTATCTTGTGAAAGATAATAGTGGGGGTACCGAAGTTCCGTCATTCGATAAGATAGCAATGATGGACTACGGTAATGTTGCAACTGCAATTATCGACCACGATTCAGAGAAGAGATTCACTATTGTTAGGCAATGGAAGTATACTTTTACCGGGTCTTGTAATTCGCAATATCCCGGTAAAGATAGGATTGATTTTAACGACGTTGTTTACATTAATGTAGATACGGAGTTTAAGTCTGCGACAGATGGTAAGTATGCAAATACCCAAAAGAATGCTTGGGTTTTGTATATTATACCGCAGAGTTATGACTGTGTAATTGACGGACATGTTAATGTTCGTTTTGAATCGTTGGTGTAA
Protein Sequence MVKRKRSTGVTTTYAKRSRVGSGYRRRWSRRRRIVRRKGVYARHRSQSVLHSLSNATATKGKAGYGWHLNEIPLGSSYPERHSDKVKVKSFRFRMQFRDGANGGTNAANVHNLYLYLVKDNSGGTEVPSFDKIAMMDYGNVATAIIDHDSEKRFTIVRQWKYTFTGSCNSQYPGKDRIDFNDVVYINVDTEFKSATDGKYANTQKNAWVLYIIPQSYDCVIDGHVNVRFESLV

NCBI Accession YP_009506572.1
Location 1438-1821,1961-2584
Protein Name replication-associated protein
Coding Region ATGCCACGTCAACCACTAACATACCGATTTCAGGGTAAGTCGGCTTTCCTAACTTACCCAAAATGCGATTTAACACCAACATCCGTACTAGATTATTTATATAATCTATTAAAAAATTATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGACCACAGACCTGATAGGCCCATCACATTAATCATTGAAGGCCCATCCAAAACAGGTAAAACAGCATGGGCTAGATCACTGGGCCGACACAATTACTACTGCGGAAGTGTGGACTGGAGCGCGTATGACAAACACGCTATGTATAATGTAATAGATGATATTCCATTTCAGTTTTTACCATGTAAAAAAGAAATCCTCGGAGCACAAAAAGATTTTACGGTAAATGAAAAATACCGTAAAAAAACAAAAGTGCCCGGAGGAATTCCAACTATAGTACTATGTAACCCAGACCAATCGTACAGAGCTGCACTACAGCTACATGAGATGTACGAATGGTCTGTATGTAACGTATTACATATAGAAATACAACAGCCCTTTTATTGA
Protein Sequence MPRQPLTYRFQGKSAFLTYPKCDLTPTSVLDYLYNLLKNYDIFYARVCQENHQDGTKHLHCLVQLAKRLTTRDPKYFDITTANTITSGDAQPHHPNIQVPRSDAHVADYIAKDGNFVERGVLKATRRSPKKSRDTIWTAILQESTSKPDFLARVQSEQPYTWATQLRNLEYAANSRWPEPPVLYEPRYRAFPNLPEPIKQWAETNLYTDHRPDRPITLIIEGPSKTGKTAWARSLGRHNYYCGSVDWSAYDKHAMYNVIDDIPFQFLPCKKEILGAQKDFTVNEKYRKKTKVPGGIPTIVLCNPDQSYRAALQLHEMYEWSVCNVLHIEIQQPFY

NCBI Accession YP_009506573.1
Location 1808-2584
Protein Name RepA
Coding Region ATGCCACGTCAACCACTAACATACCGATTTCAGGGTAAGTCGGCTTTCCTAACTTACCCAAAATGCGATTTAACACCAACATCCGTACTAGATTATTTATATAATCTATTAAAAAATTATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGTAAGTTTCAACAGTATGCAACTAATTGATCCAGATATTGAACATGCAGATCTGGATTGGGCCTCAAATACGGCCCAAGAAGAATTAGAAGAACAACTACTGTTGAACTCACAACAGCCCATTACTGTTTCTGATGCAGGACCACAGACCTGA
Protein Sequence MPRQPLTYRFQGKSAFLTYPKCDLTPTSVLDYLYNLLKNYDIFYARVCQENHQDGTKHLHCLVQLAKRLTTRDPKYFDITTANTITSGDAQPHHPNIQVPRSDAHVADYIAKDGNFVERGVLKATRRSPKKSRDTIWTAILQESTSKPDFLARVQSEQPYTWATQLRNLEYAANSRWPEPPVLYEPRYRAFPNLPEPIKQWAETNLYTVSFNSMQLIDPDIEHADLDWASNTAQEELEEQLLLNSQQPITVSDAGPQT

NCBI Accession YP_009506574.1
Location 1957-2466
Protein Name C3
Coding Region ATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGTAA
Protein Sequence MIFFMPEFVRKIIRMERNTSTVSSNSQSDSPPETQNTSTSPPQTLLPVVMLNHTTPISRYPEATPTSPTTSPRTETSSNEAYLRLQDVALRSLGIQSGLLYSRSLHPSPTSSPESSRNSPTHGQHSYATWSTQPIPDGQNPLYCMNPDTGLSLIYLSPLNNGPKQTSTQ

References More References in PubMed

1

Complete genome sequences of Plantago lanceolata latent virus isolated from asymptomatic ribwort plantain plants in France, Italy, and Spain.

Filloux D, et al.  Microbiol Resour Announc. 2025 Sep 26:e0065425. doi: 10.1128/mra.00654-25. Online ahead of print.

PMID: 41002252
2

Capulavirus and Grablovirus: two new genera in the family Geminiviridae.

Varsani A, et al.  Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17.

PMID: 28213872
3

Genetic diversity and phylogenetic characteristics of viruses in lily plants in Beijing.

Chen L, et al.  Front Microbiol. 2023 Apr 17;14:1127235. doi: 10.3389/fmicb.2023.1127235. eCollection 2023.

PMID: 37138632
4

Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland.

Susi H, et al.  Arch Virol. 2017 Jul;162(7):2041-2045. doi: 10.1007/s00705-017-3298-0. Epub 2017 Mar 10.

PMID: 28283818
5

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools.

Susi H, et al.  PeerJ. 2019 Jan 11;7:e6140. doi: 10.7717/peerj.6140. eCollection 2019.

PMID: 30648011
6

Coinfection with a virus constrains within-host infection load but increases transmission potential of a highly virulent fungal plant pathogen.

Susi H, et al.  Ecol Evol. 2022 Mar 8;12(3):e8673. doi: 10.1002/ece3.8673. eCollection 2022 Mar.

PMID: 35342557
7

Comprehensive Virome Analysis of Commercial Lilies in South Korea by RT-PCR, High-Throughput Sequencing, and Phylogenetic Analyses.

Min D, et al.  Int J Mol Sci. 2025 Oct 1;26(19):9598. doi: 10.3390/ijms26199598.

PMID: 41096872