Plantago lanceolata latent virus
Basic Information
| Genus | Capulavirus |
|---|---|
| NCBI Assembly | GCF_002824765.1 |
| Isolate | Finland: Aland archipelago |
| Release date | 2018/8/25 |
| Submitter | Bernardo,P., Muhire,B., Francois,S., Deshoux,M., Hartnady,P., Farkas,K., Kraberger,S., Filloux,D., Fernandez,E., Galzi,S., Ferdinand,R., Granier,M., Marais,A., Monge Blasco,P., Candresse,T., Escriu,F., Varsani,A., Harkins,G.W., Martin,D.P., Roumagnac,P., Frilander,M.J., Monge,P., Peterschmitt,M., Laine,A.L. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038477
TAATATTACTGAAGTCCGCTGTGGGCCCCACCTTATCGTATTGGTCAAAAATGATGGGCCCTGCGAATCTGTTTTTTGAGTGACGTGTTTAATATGTCACGTATTTGGGACAGTATTTATACAATGATCTGCAGTATCTGTGATATTTGTATACAAATTTCTGACAGAAGCTAGTATTGTATGGAATACTGTTCCGAAGTACTCTTCTGGACGTATTTTTTGATAATTACTATTTATTTTGCATTGATATTATATTTCAATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGAGCGTTGGAGCGTTAAAGTAGCGCGGTTTGAAGAAATTCTTCAAGCGGCTATAAATACGTCACGTTTGGGGCGTATTGAGTACGAGATCGAATCGCGAATTGTTAAGGACAATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAGGGTTGGCAGTGGTTATAGGCGACGTTGGAGTAGACGTCGTCGTATTGTTAGGCGTAAAGGTGTTTATGCAAGGCACAGATCTCAGTCTGTGTTACATTCCCTGTCTAATGCGACAGCAACGAAGGGAAAGGCTGGTTATGGATGGCATTTGAACGAGATACCTTTGGGTTCTTCTTACCCCGAGCGACATAGTGATAAAGTGAAGGTGAAGTCATTTAGGTTCCGTATGCAATTTAGAGATGGTGCTAACGGAGGAACCAATGCTGCAAATGTTCATAACCTATATCTTTATCTTGTGAAAGATAATAGTGGGGGTACCGAAGTTCCGTCATTCGATAAGATAGCAATGATGGACTACGGTAATGTTGCAACTGCAATTATCGACCACGATTCAGAGAAGAGATTCACTATTGTTAGGCAATGGAAGTATACTTTTACCGGGTCTTGTAATTCGCAATATCCCGGTAAAGATAGGATTGATTTTAACGACGTTGTTTACATTAATGTAGATACGGAGTTTAAGTCTGCGACAGATGGTAAGTATGCAAATACCCAAAAGAATGCTTGGGTTTTGTATATTATACCGCAGAGTTATGACTGTGTAATTGACGGACATGTTAATGTTCGTTTTGAATCGTTGGTGTAACTAAATATTTGTGAAATAAAAAGTTTATCTTTGGTGTATTTAACAAATATTTTGTTTTTGGGGGGTTAAAGTGTAAAAAAATTGTACTTGGTGTTGCCATTTGTAAAAAAATTGAAGGAAAAAAATGTTGCCCCGTGTATACAATAGAATAATTGGAGCCCGCGTGAGCGGGTGGAAGAACTTTTCAATAAAAGGGCTGTTGTATTTCTATATGTAATACGTTACATACAGACCATTCGTACATCTCATGTAGCTGTAGTGCAGCTCTGTACGATTGGTCTGGGTTACATAGTACTATAGTTGGAATTCCTCCGGGCACTTTTGTTTTTTTACGGTATTTTTCATTTACCGTAAAATCTTTTTGTGCTCCGAGGATTTCTTTTTTACATGGTAAAAACTGAAATGGAATATCATCTATTACATTATACATAGCGTGTTTGTCATACGCGCTCCAGTCCACACTTCCGCAGTAGTAATTGTGTCGGCCCAGTGATCTAGCCCATGCTGTTTTACCTGTTTTGGATGGGCCTTCAATGATTAATGTGATGGGCCTATCAGGTCTGTGGTCCTGCATCAGAAACAGTAATGGGCTGTTGTGAGTTCAACAGTAGTTGTTCTTCTAATTCTTCTTGGGCCGTATTTGAGGCCCAATCCAGATCTGCATGTTCAATATCTGGATCAATTAGTTGCATACTGTTGAAACTTACTGTGTAGAGGTTTGTTTCGGCCCATTGTTTAATGGGCTCAGGTAAATTAGGGAAAGCCCTGTATCTGGGTTCATACAGTACAGGGGGTTCTGGCCATCTGGAATTGGCTGCGTACTCCAGGTTGCGTAACTGTGTTGCCCATGTGTAGGGCTGTTCCGACTGGACTCTGGCGAGGAAGTCGGGCTTGGATGTAGACTCCTGGAGTATAGCAGTCCAGATTGTATCCCTAGACTTCTTAGGGCTACGTCTTGTAGCCTTAAGTACGCCTCGTTCGACGAAGTTTCCGTCCTTGGCGATGTAGTCGGCGACGTGGGCGTCGCTTCTGGGTACCTGGATATTGGGGTGGTGTGGTTGAGCATCACCACTGGTAATAGTGTTTGCGGTGGTGATGTCGAAGTATTTTGGGTCTCTGGTGGTGAGTCGCTTTGCGAGTTGGACGAGACAGTGGAGGTGTTTCGTTCCATCCTGATGATTTTCCTGACAAACTCTGGCATAAAAAATATCATAATTTTTTAATAGATTATATAAATAATCTAGTACGGATGTTGGTGTTAAATCGCATTTTGGGTAAGTTAGGAAAGCCGACTTACCCTGAAATCGGTATGTTAGTGGTTGACGTGGCATATTTCTAGAGAGAGAAATATTGTAGGGGTATTTTGGGTGGAAAAAAAAATAGGCTGAAAATGGTGTTTCCAGAGGGTTTTCAGACTAGTTTCGTGTTTAACAATGAAGTGAGCCGCGTAGCCAATTTATAGTAGTGAGCCAATGAGGCGAATTTAGCGAGAATTTGGAATCCGTAAATCTGGGCCGTTGATTGGATGTGTGGATGGATTAGTGCCACGTGGCGGGTACTGTGGGCGGCGGACTTCATA
Gene Information
| NCBI Accession | YP_009506569.1 |
|---|---|
| Location | 181-441 |
| Protein Name | V4 |
| Coding Region | ATGGAATACTGTTCCGAAGTACTCTTCTGGACGTATTTTTTGATAATTACTATTTATTTTGCATTGATATTATATTTCAATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGA |
| Protein Sequence | MEYCSEVLFWTYFLIITIYFALILYFNGKTLLLGRRITEQLREVNCYCREAMASRPGEARVGEFTNSAGRLVPSSSCRLSKIPEEG |
| NCBI Accession | YP_009506570.1 |
|---|---|
| Location | 260-607 |
| Protein Name | V3 |
| Coding Region | ATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGAGCGTTGGAGCGTTAAAGTAGCGCGGTTTGAAGAAATTCTTCAAGCGGCTATAAATACGTCACGTTTGGGGCGTATTGAGTACGAGATCGAATCGCGAATTGTTAAGGACAATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAG |
| Protein Sequence | MAKRFYLVDELPSSYGKLIAIAGRQWLQDQEKRALENSLIRQADLYRQVRVGFQKSQKRGERWSVKVARFEEILQAAINTSRLGRIEYEIESRIVKDNGEAKEEYWCDYDLCEAE |
| NCBI Accession | YP_009506571.1 |
|---|---|
| Location | 552-1253 |
| Protein Name | coat protein |
| Coding Region | ATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAGGGTTGGCAGTGGTTATAGGCGACGTTGGAGTAGACGTCGTCGTATTGTTAGGCGTAAAGGTGTTTATGCAAGGCACAGATCTCAGTCTGTGTTACATTCCCTGTCTAATGCGACAGCAACGAAGGGAAAGGCTGGTTATGGATGGCATTTGAACGAGATACCTTTGGGTTCTTCTTACCCCGAGCGACATAGTGATAAAGTGAAGGTGAAGTCATTTAGGTTCCGTATGCAATTTAGAGATGGTGCTAACGGAGGAACCAATGCTGCAAATGTTCATAACCTATATCTTTATCTTGTGAAAGATAATAGTGGGGGTACCGAAGTTCCGTCATTCGATAAGATAGCAATGATGGACTACGGTAATGTTGCAACTGCAATTATCGACCACGATTCAGAGAAGAGATTCACTATTGTTAGGCAATGGAAGTATACTTTTACCGGGTCTTGTAATTCGCAATATCCCGGTAAAGATAGGATTGATTTTAACGACGTTGTTTACATTAATGTAGATACGGAGTTTAAGTCTGCGACAGATGGTAAGTATGCAAATACCCAAAAGAATGCTTGGGTTTTGTATATTATACCGCAGAGTTATGACTGTGTAATTGACGGACATGTTAATGTTCGTTTTGAATCGTTGGTGTAA |
| Protein Sequence | MVKRKRSTGVTTTYAKRSRVGSGYRRRWSRRRRIVRRKGVYARHRSQSVLHSLSNATATKGKAGYGWHLNEIPLGSSYPERHSDKVKVKSFRFRMQFRDGANGGTNAANVHNLYLYLVKDNSGGTEVPSFDKIAMMDYGNVATAIIDHDSEKRFTIVRQWKYTFTGSCNSQYPGKDRIDFNDVVYINVDTEFKSATDGKYANTQKNAWVLYIIPQSYDCVIDGHVNVRFESLV |
| NCBI Accession | YP_009506572.1 |
|---|---|
| Location | 1438-1821,1961-2584 |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCACGTCAACCACTAACATACCGATTTCAGGGTAAGTCGGCTTTCCTAACTTACCCAAAATGCGATTTAACACCAACATCCGTACTAGATTATTTATATAATCTATTAAAAAATTATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGACCACAGACCTGATAGGCCCATCACATTAATCATTGAAGGCCCATCCAAAACAGGTAAAACAGCATGGGCTAGATCACTGGGCCGACACAATTACTACTGCGGAAGTGTGGACTGGAGCGCGTATGACAAACACGCTATGTATAATGTAATAGATGATATTCCATTTCAGTTTTTACCATGTAAAAAAGAAATCCTCGGAGCACAAAAAGATTTTACGGTAAATGAAAAATACCGTAAAAAAACAAAAGTGCCCGGAGGAATTCCAACTATAGTACTATGTAACCCAGACCAATCGTACAGAGCTGCACTACAGCTACATGAGATGTACGAATGGTCTGTATGTAACGTATTACATATAGAAATACAACAGCCCTTTTATTGA |
| Protein Sequence | MPRQPLTYRFQGKSAFLTYPKCDLTPTSVLDYLYNLLKNYDIFYARVCQENHQDGTKHLHCLVQLAKRLTTRDPKYFDITTANTITSGDAQPHHPNIQVPRSDAHVADYIAKDGNFVERGVLKATRRSPKKSRDTIWTAILQESTSKPDFLARVQSEQPYTWATQLRNLEYAANSRWPEPPVLYEPRYRAFPNLPEPIKQWAETNLYTDHRPDRPITLIIEGPSKTGKTAWARSLGRHNYYCGSVDWSAYDKHAMYNVIDDIPFQFLPCKKEILGAQKDFTVNEKYRKKTKVPGGIPTIVLCNPDQSYRAALQLHEMYEWSVCNVLHIEIQQPFY |
| NCBI Accession | YP_009506573.1 |
|---|---|
| Location | 1808-2584 |
| Protein Name | RepA |
| Coding Region | ATGCCACGTCAACCACTAACATACCGATTTCAGGGTAAGTCGGCTTTCCTAACTTACCCAAAATGCGATTTAACACCAACATCCGTACTAGATTATTTATATAATCTATTAAAAAATTATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGTAAGTTTCAACAGTATGCAACTAATTGATCCAGATATTGAACATGCAGATCTGGATTGGGCCTCAAATACGGCCCAAGAAGAATTAGAAGAACAACTACTGTTGAACTCACAACAGCCCATTACTGTTTCTGATGCAGGACCACAGACCTGA |
| Protein Sequence | MPRQPLTYRFQGKSAFLTYPKCDLTPTSVLDYLYNLLKNYDIFYARVCQENHQDGTKHLHCLVQLAKRLTTRDPKYFDITTANTITSGDAQPHHPNIQVPRSDAHVADYIAKDGNFVERGVLKATRRSPKKSRDTIWTAILQESTSKPDFLARVQSEQPYTWATQLRNLEYAANSRWPEPPVLYEPRYRAFPNLPEPIKQWAETNLYTVSFNSMQLIDPDIEHADLDWASNTAQEELEEQLLLNSQQPITVSDAGPQT |
| NCBI Accession | YP_009506574.1 |
|---|---|
| Location | 1957-2466 |
| Protein Name | C3 |
| Coding Region | ATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGTAA |
| Protein Sequence | MIFFMPEFVRKIIRMERNTSTVSSNSQSDSPPETQNTSTSPPQTLLPVVMLNHTTPISRYPEATPTSPTTSPRTETSSNEAYLRLQDVALRSLGIQSGLLYSRSLHPSPTSSPESSRNSPTHGQHSYATWSTQPIPDGQNPLYCMNPDTGLSLIYLSPLNNGPKQTSTQ |
References More References in PubMed
| 1 |
Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland. Susi H, et al. Arch Virol. 2017 Jul;162(7):2041-2045. doi: 10.1007/s00705-017-3298-0. Epub 2017 Mar 10. PMID: 28283818 |
|---|---|
| 2 |
Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. Susi H, et al. PeerJ. 2019 Jan 11;7:e6140. doi: 10.7717/peerj.6140. eCollection 2019. PMID: 30648011 |
| 3 |
Capulavirus and Grablovirus: two new genera in the family Geminiviridae. Varsani A, et al. Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17. PMID: 28213872 |
| 4 |
Genetic diversity and phylogenetic characteristics of viruses in lily plants in Beijing. Chen L, et al. Front Microbiol. 2023 Apr 17;14:1127235. doi: 10.3389/fmicb.2023.1127235. eCollection 2023. PMID: 37138632 |
| 5 |
Susi H, et al. Ecol Evol. 2022 Mar 8;12(3):e8673. doi: 10.1002/ece3.8673. eCollection 2022 Mar. PMID: 35342557 |