Euphorbia caput-medusae latent virus

Basic Information

Genus Capulavirus
NCBI Assembly GCF_001654365.1
Isolate South Africa: Western Cape, Darling
Release date 2016/6/2
Submitter Bernardo,P., Muhire,B., Francois,S., Deshoux,M., Hartnady,P., Farkas,K., Kraberger,S., Filloux,D., Fernandez,E., Galzi,S., Ferdinand,R., Granier,M., Marais,A., Monge Blasco,P., Candresse,T., Escriu,F., Varsani,A., Harkins,G.W., Martin,D.P., Roumagnac,P., Frilander,M.J., Monge,P., Peterschmitt,M., Laine,A.L.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_030238
TAATATTACCGGTTTCGCTGTGGGCCCCACTCACGCTTTTGTCGGCCGCAATTATTGACTGGTCAAAAAGTATTTATGTGACGTGGCATTATATATACCATAAGCAGTGATCTGGATGAGGATCTGAATGTTCTCGAAGAGGTCATTGGGACATCCTAGTACTGTTTATGGAATATTGTGCCTCCTTAATTTTTTGGTGGCAGAATATTTTATTAATTTTTATTTTTTCATTTATTATTTTTATAAATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGATGATAGAGAAGGCCCAAGAACTGGGCCTCTTTCAAGAGGCCTACAGATACCGTACTCTGAGACAGGCCTTCAGACAATCTCAGAGGAGGAAAGATAAATGGGCCATAAAAGTGGCCCAATTTAACGGAGATTTGACGGCGGCTATAAATAGCGGCCGATTGTTTGGGCTCGAGGCCCAAAAATATTTAGATTACAAATCCCAAGTTGAGAATGGTGACTACAAGATCGGGACGCAATTACCAGGCCCTGGTCCCAACATGGGCCCGAAAGAAGAGAAGGTCCACCCTAGCCCGGAGTACAATAGTTGGGCCGATTAGAAGGCCCAATTACCAGTACAAGACCAGATACACTCCTCATAGGCCTCAACACAAGATTCACTCTCTTAGCCAGACCCGGGTTGTTAGCGGATCTGATAATGGTTATGGGTGGCATGTATCGGGTGTTAATATAGGATCCGGTTTCGAAGACAGACACAGTGACAAGATTAAGATAATTAATCTTAAGTTTATGATGCAGTTAAAGACTTCAGATGCCGGTCAACAGGCATCTTGTTACCATAATTTGTATATGTTTTTAGTTAAAGATAATTCTGGTGGAGCCCAAGTTCCCAAGTTTAATTCAATAGTAATGATGGATAATTCAAATCCAGCTACTGCAGAGGTTGACCACGATAGTAAAGACCGATTTACTATTGTACGGAGATGGAAGTTTAGCTTTAAGGGTAATTCATCTAAAAACGGCACCGCATACGACTGTGCTCGTAATTTAATTGATTTTAATAGAAATGTTAAAATCAATTCTGTTAGCGAGTTTAAATCCGCTACGGATGGTTCATATGCAAATACACAGAAGAATGCATGGGTTCTGTATATTGTACCACAGATATACGATTGTACTGTAGACGGACATGTAAAAATAAAATACGTATCTATTGTGTAATATATTAGCACGAGAGTGTAATTAATAAAAAGGGTCTTTTATTTCAATATTTAGCACATTATGTGTACTCCATTCGTACATTTCAGAATTAGCTAGAGCAATCCTATAGGATTGATCGGGATTGCACAATATAATTGTTGGAATCCCTCCTTTAATCCTAGTTTTTTTACGGTATTTTTCATTTACCGTAAAATCTTTCTGACAGCCTAGTAATTCTTTTTTACAAGGTAAATACTGGAACGGAATATCATCAATTACATTATACAAAGCAAATACATCATAATTACTAAAGTCAACCCCTCCACAGTAATAGTTGTGTCTTCCAAGGCTTCTGGCCCACGCAGTCTTGCCTGTCTTGGAGGGTCCCTCGATTATTAATGTGATTGGTCGATCAGGTTTCTGGTCCTGAGTCATTAATAATTATTGGTTCATCAATATTATTAATTAATTCATCATTAATAAATTCAGTTGTTAAATCATGGGCCCATCTAATATCCTCAATAGTCAAATCGGCCCCTAATAATTGAATTGCATGGGCACTTACTGTGAAGAGATTTGTCTCGGCCCATTGTTGAATGGGCTCGGGGATGCGAGGAAAATTGACAAATCTGGGTTCGAACACAGTAATGGGCTCGGGCCATTTACTGTTTGCTGCATACTCCAGATTTCTGAGTTGAGTGGCCCAGACATATGGTTGCTCATGTTGGACTCTGGCGAGGAATTCGGACTTGGATGTGGATTCAGTGAGGATGGAGGCCCAAATTGTATCCCTTGTCTTCTTAGGGCTTCTTCTACTTGCCCTAAGTATTCCTCGTTCCTCAAATTGTCCTCCCTTGGCAATATAGTCTGCCACATCTGCATCTCTTCTTGGGACCTGGCAATTGGGGTGGTATGTGGCCACTCCATTTGGGTCCTTGATGTCGAAGAACCGTTGGTTGGTTGTGTTGAGCCTCTTGTCCATCTGGACAAGGCAGTGAAGGTGTGGCTCACCGTCTTGGTGATTCTCCGTACATACCCTAGCATATGTAGGGTTAAAATTATTTAATAGTTGATATAAATAATCAATTAAAAAAATAGGAAGAAGAGGGCATTTTGGGTAAGTCAGAAAAATAGACTTACCTTGTAAGCGGAATGTGTTGTTGGGTTGACGAGGCATATTTTCAAAATGACCAAAAGGGTAAAAAATTGCTTATAGAGAAGAGTTTTTGGAAAACTTTATCTATTACAGGTTGAGGTGAGCAGGTGAGCAGCGAGCAGCGGATTTAAATAATATATTTGAACGGCTGAGATGATGCCACGTGGCATCATCTTATGAAGTTGCTTTATTAAAAGCAGAAAGAATCTTTTGACTACTTTTTTGTCGGTGGCGTATAAAATACGCGTCACGTGGTTGGTCCTCAGCGAAACCGA

Gene Information

NCBI Accession YP_009255243.1
Location 128-334
Protein Name V2
Coding Region ATGTTCTCGAAGAGGTCATTGGGACATCCTAGTACTGTTTATGGAATATTGTGCCTCCTTAATTTTTTGGTGGCAGAATATTTTATTAATTTTTATTTTTTCATTTATTATTTTTATAAATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGA
Protein Sequence MFSKRSLGHPSTVYGILCLLNFLVAEYFINFYFFIYYFYKWKNVSTSQKNFRIRTGSYRASAQNTSWA

NCBI Accession YP_009255244.1
Location 168-431
Protein Name V4
Coding Region ATGGAATATTGTGCCTCCTTAATTTTTTGGTGGCAGAATATTTTATTAATTTTTATTTTTTCATTTATTATTTTTATAAATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGATGATAGAGAAGGCCCAAGAACTGGGCCTCTTTCAAGAGGCCTACAGATACCGTACTCTGAGACAGGCCTTCAGACAATCTCAGAGGAGGAAAGATAA
Protein Sequence MEYCASLIFWWQNILLIFIFSFIIFINGKTFLLLRRTSGYVREVTGLLHRILLGLDDREGPRTGPLSRGLQIPYSETGLQTISEEER

NCBI Accession YP_009255245.1
Location 247-651
Protein Name V3
Coding Region ATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGATGATAGAGAAGGCCCAAGAACTGGGCCTCTTTCAAGAGGCCTACAGATACCGTACTCTGAGACAGGCCTTCAGACAATCTCAGAGGAGGAAAGATAAATGGGCCATAAAAGTGGCCCAATTTAACGGAGATTTGACGGCGGCTATAAATAGCGGCCGATTGTTTGGGCTCGAGGCCCAAAAATATTTAGATTACAAATCCCAAGTTGAGAATGGTGACTACAAGATCGGGACGCAATTACCAGGCCCTGGTCCCAACATGGGCCCGAAAGAAGAGAAGGTCCACCCTAGCCCGGAGTACAATAGTTGGGCCGATTAG
Protein Sequence MEKRFYFSEELPDTYGKLQGFCTEYFLGLMIEKAQELGLFQEAYRYRTLRQAFRQSQRRKDKWAIKVAQFNGDLTAAINSGRLFGLEAQKYLDYKSQVENGDYKIGTQLPGPGPNMGPKEEKVHPSPEYNSWAD

NCBI Accession YP_009255246.1
Location 545-1273
Protein Name coat protein
Coding Region ATGGTGACTACAAGATCGGGACGCAATTACCAGGCCCTGGTCCCAACATGGGCCCGAAAGAAGAGAAGGTCCACCCTAGCCCGGAGTACAATAGTTGGGCCGATTAGAAGGCCCAATTACCAGTACAAGACCAGATACACTCCTCATAGGCCTCAACACAAGATTCACTCTCTTAGCCAGACCCGGGTTGTTAGCGGATCTGATAATGGTTATGGGTGGCATGTATCGGGTGTTAATATAGGATCCGGTTTCGAAGACAGACACAGTGACAAGATTAAGATAATTAATCTTAAGTTTATGATGCAGTTAAAGACTTCAGATGCCGGTCAACAGGCATCTTGTTACCATAATTTGTATATGTTTTTAGTTAAAGATAATTCTGGTGGAGCCCAAGTTCCCAAGTTTAATTCAATAGTAATGATGGATAATTCAAATCCAGCTACTGCAGAGGTTGACCACGATAGTAAAGACCGATTTACTATTGTACGGAGATGGAAGTTTAGCTTTAAGGGTAATTCATCTAAAAACGGCACCGCATACGACTGTGCTCGTAATTTAATTGATTTTAATAGAAATGTTAAAATCAATTCTGTTAGCGAGTTTAAATCCGCTACGGATGGTTCATATGCAAATACACAGAAGAATGCATGGGTTCTGTATATTGTACCACAGATATACGATTGTACTGTAGACGGACATGTAAAAATAAAATACGTATCTATTGTGTAA
Protein Sequence MVTTRSGRNYQALVPTWARKKRRSTLARSTIVGPIRRPNYQYKTRYTPHRPQHKIHSLSQTRVVSGSDNGYGWHVSGVNIGSGFEDRHSDKIKIINLKFMMQLKTSDAGQQASCYHNLYMFLVKDNSGGAQVPKFNSIVMMDNSNPATAEVDHDSKDRFTIVRRWKFSFKGNSSKNGTAYDCARNLIDFNRNVKINSVSEFKSATDGSYANTQKNAWVLYIVPQIYDCTVDGHVKIKYVSIV

NCBI Accession YP_009255247.1
Location 1295-1678,1818-2429
Protein Name replication-associated protein
Coding Region ATGCCTCGTCAACCCAACAACACATTCCGCTTACAAGGTAAGTCTATTTTTCTGACTTACCCAAAATGCCCTCTTCTTCCTATTTTTTTAATTGATTATTTATATCAACTATTAAATAATTTTAACCCTACATATGCTAGGGTATGTACGGAGAATCACCAAGACGGTGAGCCACACCTTCACTGCCTTGTCCAGATGGACAAGAGGCTCAACACAACCAACCAACGGTTCTTCGACATCAAGGACCCAAATGGAGTGGCCACATACCACCCCAATTGCCAGGTCCCAAGAAGAGATGCAGATGTGGCAGACTATATTGCCAAGGGAGGACAATTTGAGGAACGAGGAATACTTAGGGCAAGTAGAAGAAGCCCTAAGAAGACAAGGGATACAATTTGGGCCTCCATCCTCACTGAATCCACATCCAAGTCCGAATTCCTCGCCAGAGTCCAACATGAGCAACCATATGTCTGGGCCACTCAACTCAGAAATCTGGAGTATGCAGCAAACAGTAAATGGCCCGAGCCCATTACTGTGTTCGAACCCAGATTTGTCAATTTTCCTCGCATCCCCGAGCCCATTCAACAATGGGCCGAGACAAATCTCTTCACAGACCAGAAACCTGATCGACCAATCACATTAATAATCGAGGGACCCTCCAAGACAGGCAAGACTGCGTGGGCCAGAAGCCTTGGAAGACACAACTATTACTGTGGAGGGGTTGACTTTAGTAATTATGATGTATTTGCTTTGTATAATGTAATTGATGATATTCCGTTCCAGTATTTACCTTGTAAAAAAGAATTACTAGGCTGTCAGAAAGATTTTACGGTAAATGAAAAATACCGTAAAAAAACTAGGATTAAAGGAGGGATTCCAACAATTATATTGTGCAATCCCGATCAATCCTATAGGATTGCTCTAGCTAATTCTGAAATGTACGAATGGAGTACACATAATGTGCTAAATATTGAAATAAAAGACCCTTTTTATTAA
Protein Sequence MPRQPNNTFRLQGKSIFLTYPKCPLLPIFLIDYLYQLLNNFNPTYARVCTENHQDGEPHLHCLVQMDKRLNTTNQRFFDIKDPNGVATYHPNCQVPRRDADVADYIAKGGQFEERGILRASRRSPKKTRDTIWASILTESTSKSEFLARVQHEQPYVWATQLRNLEYAANSKWPEPITVFEPRFVNFPRIPEPIQQWAETNLFTDQKPDRPITLIIEGPSKTGKTAWARSLGRHNYYCGGVDFSNYDVFALYNVIDDIPFQYLPCKKELLGCQKDFTVNEKYRKKTRIKGGIPTIILCNPDQSYRIALANSEMYEWSTHNVLNIEIKDPFY

NCBI Accession YP_009255248.1
Location 1665-2429
Protein Name RepA
Coding Region ATGCCTCGTCAACCCAACAACACATTCCGCTTACAAGGTAAGTCTATTTTTCTGACTTACCCAAAATGCCCTCTTCTTCCTATTTTTTTAATTGATTATTTATATCAACTATTAAATAATTTTAACCCTACATATGCTAGGGTATGTACGGAGAATCACCAAGACGGTGAGCCACACCTTCACTGCCTTGTCCAGATGGACAAGAGGCTCAACACAACCAACCAACGGTTCTTCGACATCAAGGACCCAAATGGAGTGGCCACATACCACCCCAATTGCCAGGTCCCAAGAAGAGATGCAGATGTGGCAGACTATATTGCCAAGGGAGGACAATTTGAGGAACGAGGAATACTTAGGGCAAGTAGAAGAAGCCCTAAGAAGACAAGGGATACAATTTGGGCCTCCATCCTCACTGAATCCACATCCAAGTCCGAATTCCTCGCCAGAGTCCAACATGAGCAACCATATGTCTGGGCCACTCAACTCAGAAATCTGGAGTATGCAGCAAACAGTAAATGGCCCGAGCCCATTACTGTGTTCGAACCCAGATTTGTCAATTTTCCTCGCATCCCCGAGCCCATTCAACAATGGGCCGAGACAAATCTCTTCACAGTAAGTGCCCATGCAATTCAATTATTAGGGGCCGATTTGACTATTGAGGATATTAGATGGGCCCATGATTTAACAACTGAATTTATTAATGATGAATTAATTAATAATATTGATGAACCAATAATTATTAATGACTCAGGACCAGAAACCTGA
Protein Sequence MPRQPNNTFRLQGKSIFLTYPKCPLLPIFLIDYLYQLLNNFNPTYARVCTENHQDGEPHLHCLVQMDKRLNTTNQRFFDIKDPNGVATYHPNCQVPRRDADVADYIAKGGQFEERGILRASRRSPKKTRDTIWASILTESTSKSEFLARVQHEQPYVWATQLRNLEYAANSKWPEPITVFEPRFVNFPRIPEPIQQWAETNLFTVSAHAIQLLGADLTIEDIRWAHDLTTEFINDELINNIDEPIIINDSGPET

NCBI Accession YP_009255249.1
Location 1814-2296
Protein Name C3
Coding Region ATGCTAGGGTATGTACGGAGAATCACCAAGACGGTGAGCCACACCTTCACTGCCTTGTCCAGATGGACAAGAGGCTCAACACAACCAACCAACGGTTCTTCGACATCAAGGACCCAAATGGAGTGGCCACATACCACCCCAATTGCCAGGTCCCAAGAAGAGATGCAGATGTGGCAGACTATATTGCCAAGGGAGGACAATTTGAGGAACGAGGAATACTTAGGGCAAGTAGAAGAAGCCCTAAGAAGACAAGGGATACAATTTGGGCCTCCATCCTCACTGAATCCACATCCAAGTCCGAATTCCTCGCCAGAGTCCAACATGAGCAACCATATGTCTGGGCCACTCAACTCAGAAATCTGGAGTATGCAGCAAACAGTAAATGGCCCGAGCCCATTACTGTGTTCGAACCCAGATTTGTCAATTTTCCTCGCATCCCCGAGCCCATTCAACAATGGGCCGAGACAAATCTCTTCACAGTAA
Protein Sequence MLGYVRRITKTVSHTFTALSRWTRGSTQPTNGSSTSRTQMEWPHTTPIARSQEEMQMWQTILPREDNLRNEEYLGQVEEALRRQGIQFGPPSSLNPHPSPNSSPESNMSNHMSGPLNSEIWSMQQTVNGPSPLLCSNPDLSIFLASPSPFNNGPRQISSQ

References More References in PubMed

1

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa.

Bernardo P, et al.  Virology. 2016 Jun;493:142-53. doi: 10.1016/j.virol.2016.03.016. Epub 2016 Mar 31.

PMID: 27038709
2

Capulavirus and Grablovirus: two new genera in the family Geminiviridae.

Varsani A, et al.  Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17.

PMID: 28213872
3

Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner.

Ryckebusch F, et al.  Virology. 2020 Jul;546:98-108. doi: 10.1016/j.virol.2020.04.004. Epub 2020 Apr 15.

PMID: 32452421
4

Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications.

Bernardo P, et al.  Virus Res. 2013 Oct;177(1):35-45. doi: 10.1016/j.virusres.2013.07.006. Epub 2013 Jul 22.

PMID: 23886668