Tomato leaf curl Joydebpur betasatellite 2

Basic Information

Abbreviation ToLCuJoB2
Genebank Accession MG571522
Isolate IN-Mom-15
Download Genome |GFF3 |PEP |CDS

Genome

ACCGTGGGCGAGCGGGGTCTTTGGCGTCCGAGGTGGGTCCCACTATATCCAAAAGAAGAAAGATGGACTGGGTCAATGCAATTGGGCCTTAATTTTATGGGCTTCTATTATTGGGCTTTGTTATTGGACTCCAAAAATATATGAAACATAACATTTTAGTAATACGGCTTACAAATACATTTTGTACATGTATCATACATGTGCATTTATATCCATATCGTATTCCCCTATTACATCAATGTTAACTACTGGAGCCTCGGTCATCATTAGCATATCAATACTCTCAACCATGTCTTCACGCCGGAACTCTCTTATGGTTGAGTCTTTGTAGATGAGCTTTAGTAGGTGACATATCCCTTCCTCGATGCTGTTGAAGTCAAATGGACCTATGAACCCATGATGGCCGTATGGGATCCTGAATTTGGCTTTCGCTAGTGCCGGTGACCGTGTGGATGTCAAATCCACATGAACCATGATCGAAGTGTCGTTCGTCAACTTCACATTCACAGTGAATTCCATGCCATTCCTATTGTCATACTTGATCGTCATGATTAATTCTGTGAGTTTAAACATGAGTGCTTCCCATTATATAGGAGTCATATATCCTGATACATGAACCTAATTCAATTACGTGATCCGGTCTGCATCACATATAGTATGTGGATACGTGATGTTTGATAGTGACAACACTATCAAATGGCTGAAAGGAGGAAGACAAAACGAAACCATAATTAGAAAATAATTATGGAGAAGGAAAAAAGGAAACTAAAACAATTGAGGGAAACTCCGGTTTCACTCAGATAAACACATCATTTATGCACACTAAACAGCAAAAACTACACACACACACACAACATATTCTATATTAAAGAATGGGAGCGCAGCGAAACACGACAGCACACACGTGACACACGTGAGAAAGAAAACAGAGAGATAAAAGAAAAGAAATAAACATGGATTGATGGACGCTACAATCATTAATAAGTGATGCCGTACACATGAGTCAGTTACTATTTTACAGCACGGTAAAATAGTAAATATATTTACCCAAAGGTAAATTTCCCCCATGTCCCCAGAGCCCCCAGAGCCCCCAATTGAGACACCGATATATCGGTGCCTCAGAAAGAGAAATAAATGCTTGTATCCCTAAAATACCCTTATCTATGTGTCTGGAAGGCGCGTCGGAGTGCGCTGCAAAAGTAGCCTTTCTCTCTCATAAAACTCGTCGGAACTCCGATCTGGCTGACTCCGGTGTCACCATACAATGCCCGGCGGCGGTGTGTACCCCTGGGAGGGTAGGTACCACTACGCTACGCAGCAGCCTCAGCTACGCCGGAGCCTAGCTCGCCCACGTTCTAATATT

Gene Information

NCBI Accession AYF57946.1
Location 193-573
Gene Name C1
Protein Name C1 protein
Coding Region ATGTTTAAACTCACAGAATTAATCATGACGATCAAGTATGACAATAGGAATGGCATGGAATTCACTGTGAATGTGAAGTTGACGAACGACACTTCGATCATGGTTCATGTGGATTTGACATCCACACGGTCACCGGCACTAGCGAAAGCCAAATTCAGGATCCCATACGGCCATCATGGGTTCATAGGTCCATTTGACTTCAACAGCATCGAGGAAGGGATATGTCACCTACTAAAGCTCATCTACAAAGACTCAACCATAAGAGAGTTCCGGCGTGAAGACATGGTTGAGAGTATTGATATGCTAATGATGACCGAGGCTCCAGTAGTTAACATTGATGTAATAGGGGAATACGATATGGATATAAATGCACATGTATGA
Protein Sequence MFKLTELIMTIKYDNRNGMEFTVNVKLTNDTSIMVHVDLTSTRSPALAKAKFRIPYGHHGFIGPFDFNSIEEGICHLLKLIYKDSTIREFRREDMVESIDMLMMTEAPVVNIDVIGEYDMDINAHV

References More References in PubMed

1

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India.

Kumari P, et al.  Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B.

PMID: 30764166
2

Host-specific adaptation of diverse betasatellites associated with distinct Indian tomato-infecting begomoviruses.

Ranjan P, et al.  Virus Genes. 2014 Apr;48(2):334-42. doi: 10.1007/s11262-013-1031-y. Epub 2014 Jan 3.

PMID: 24384936
3

Molecular characterization and sequence variability of betasatellites associated with leaf curl disease of kenaf (hibiscus cannabinus L.) from different geographical locations of India.

Paul S, et al.  Acta Virol. 2008;52(4):251-6.

PMID: 19143482
4

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939