Tomato leaf curl Java betasatellite

Basic Information

Abbreviation ToLCJaB
Genebank Accession KC282642
Isolate NP-R7-Papaya-2010
Download Genome |GFF3 |PEP |CDS

Genome

ACCGGTGGCGAGCGGGGTCTTTGGGGTTTTGGGTGGGCCCCACACACAAAACAGATCTGGAGAACGTGAGTGGGCCAAATAAATGGGCCGTTGAATTGGGCTCTTTATTCAAAACAATACTCTATTTACTAAGCCCATTATTATTCATTTAAAAAAATTACATTATACATAGTCCGTATAAATGTACATTTATACGGTTACATTCTTATACACATGGTATTCGTCGTTTACTTGTATATCTATTACTGGAGCCTCTTGTTGTATCATCATATCTATGATTTCAACCATGTCTTCTGATTTGAACTCTTCTATTGTTGAATCTCTATACATGATCCTTAGTAAGTTCTTGATACCTTCTTCTAAAGCATTGAAATTGAATGGTGGTATGATGCCATTATGTCCGTATGGGATTGAGAACTTGTGCTTAACTAGAGCTGGTGACTTTGTTGAAAACACCTCTACCTCAACTGTGAATTGTATTTCTGATCTGAACTTGATGTTGATTATGAATATCATTCCTTTACTGTTGCTATATGATATAGTCATATTTGTTTGATGGAAATATATTCATTGGAACTGTTACTTATAGTTGAAATTATATTTGGTGTGTGGATGTTATTAATGTTCGTGTCAAATATGTGTTCTTTCATTACTAAGTGCATCTCTGACTGTATTGATTTGGATGTTTCATTATAAAAGAAGATATTAATGCGAACAAGAAAACAAGAAAAAGAAAGGAAAAAGATGGAAAAATATAAAAAAAAATACATAAAAAAACTAATAATAAAACTAACTATCTATTCAGAAATAATGGCCGCGCAGCGGCAACAAAACCAAAAAACAATATCAATGGAAACCTTTATAAAATAAATAGACAGAATTGAAAAGGAAAAAAGAAAAAAATAAAAGATAAAACTGAACAAAAAGAAAATAAAAAAAAATAAATAAATTAATTTAATTAATGCTAAAACACTAATTAATTGCAATTAAAACTGTTAAAAAATAATTACCGCCGTAATTATTTGATTTTTACTGCGGAGGTTAATATTGAAGGTAAATTCCTGGACTCCAATAGGTAAATGGGACACCGATATATCGGTGTCTCAATTGGGGTATTGGTGTCCCTTATTTTTAACTTTCCCATTTTGCCCTTAAAGATGTGTCTGTAAGGCGCGTGGGAGTGGCCTGAAAAAGTACACTTTCTCTCTCCAAAACTCCCCGGAGAAGACGATACAGGCTGATCCCGACCTCAATTTGCGACACGCGCGGCGGTGTGTACCCCTGGGAGGGTAGGTACCACACGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCACCGTTATAATATT

Gene Information

NCBI Accession AGF37248.1
Location 190-546
Gene Name C1
Protein Name beta C1 protein
Coding Region ATGACTATATCATATAGCAACAGTAAAGGAATGATATTCATAATCAACATCAAGTTCAGATCAGAAATACAATTCACAGTTGAGGTAGAGGTGTTTTCAACAAAGTCACCAGCTCTAGTTAAGCACAAGTTCTCAATCCCATACGGACATAATGGCATCATACCACCATTCAATTTCAATGCTTTAGAAGAAGGTATCAAGAACTTACTAAGGATCATGTATAGAGATTCAACAATAGAAGAGTTCAAATCAGAAGACATGGTTGAAATCATAGATATGATGATACAACAAGAGGCTCCAGTAATAGATATACAAGTAAACGACGAATACCATGTGTATAAGAATGTAACCGTATAA
Protein Sequence MTISYSNSKGMIFIINIKFRSEIQFTVEVEVFSTKSPALVKHKFSIPYGHNGIIPPFNFNALEEGIKNLLRIMYRDSTIEEFKSEDMVEIIDMMIQQEAPVIDIQVNDEYHVYKNVTV

References More References in PubMed

1

Association of an alphasatellite with tomato yellow leaf curl virus and ageratum yellow vein virus in Japan is suggestive of a recent introduction.

Shahid MS, et al.  Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189.

PMID: 24424499
2

Tomato leaf curl Java virus V2 protein is a determinant of virulence, hypersensitive response and suppression of posttranscriptional gene silencing.

Sharma P, et al.  Virology. 2010 Jan 5;396(1):85-93. doi: 10.1016/j.virol.2009.10.012. Epub 2009 Nov 6.

PMID: 19896687
3

Subcellular localization of V2 protein of Tomato leaf curl Java virus by using green fluorescent protein and yeast hybrid system.

Sharma P, et al.  Protoplasma. 2011 Apr;248(2):281-8. doi: 10.1007/s00709-010-0166-0. Epub 2010 Jun 13.

PMID: 20549267
4

Identification and characterization of Ageratum yellow vein Malaysia virus (AYVMV) and an associated betasatellite among begomoviruses infecting Solanum lycopersicum in Malaysia.

Mahmoudieh M, et al.  J Appl Genet. 2020 Dec;61(4):619-628. doi: 10.1007/s13353-020-00574-4. Epub 2020 Aug 17.

PMID: 32808206
5

Complete nucleotide sequence of a monopartite Begomovirus and associated satellites infecting Carica papaya in Nepal.

Shahid MS, et al.  Virus Genes. 2013 Jun;46(3):581-4. doi: 10.1007/s11262-013-0888-0. Epub 2013 Feb 9.

PMID: 23397078
6

Identification of the virulence factors and suppressors of posttranscriptional gene silencing encoded by Ageratum yellow vein virus, a monopartite begomovirus.

Sharma P, et al.  Virus Res. 2010 Apr;149(1):19-27. doi: 10.1016/j.virusres.2009.12.008. Epub 2010 Jan 15.

PMID: 20079777