Tobacco leaf chlorosis betasatellite

Basic Information

Abbreviation TobLCB
Genebank Accession JX025223
Isolate IN-01-10
Download Genome |GFF3 |PEP |CDS

Genome

ACCGGTGGCGAGCGATTTTTTTGGGGTTGCAGGTGGGTCCCACTTTACAGGAAAAGGATAACTGGACTGGATCAATCTTATTGGGCCGTCTTTTATTGGGCTTTGAATGGAATTTGTATTGGGCCTTTTATTAAATTATGTAATATAAGATTTTATTTATTGATATCATAAATATACACTTATACACTTGCACTCGTATACACACTATATAAATCATGTACATTAATATCAATCACTGGAGCCTCGTGCATCATCAGGATATCAATAGTCTCGACCATGTCCTCTTGCCGGAATTCTCCTGTGTGTTTATCCTTGTACATGACCTTTAACAGCTGACATACCCTTTCTTCAAGACGGTTGAAGTCAAATGGACCTGTGAACCCATGATGGCCGTATGGGATCAAGAACTTGGTCTTGGCTAGTGCCGGTGACCGTGTGGATACCAAATCCACCTGAACGATGATGGAATAATTGTTGCTCAACCTCACATTCACAGTGAACTCCATCCCTCTCTTATTATCATATGTGATCGTCATTGTTAATTCTATGGGTCTAAACATGATTTATGGACATAATTCATATACGTGGTCTAATATGTAGCATATGAATGTTAGTGGAGATAGAGATATAGTTACATAACTATCAATCATCTGAAAACGGATGAGAAAAGGAAAAACGGAACTGAAGAGGAAAAACAAAGAAAAGAAACAAGGATATATTATTTATGAAAGAAATGGGAGCGCAGCGAATCGAAACAGGAAAACCCAAGGAAAGAGAAAAAATAAAAAGTAAAGAGAAAAAAAAATATAAATTCGAAAACGTCATCGTTTGAGAGTAATAAAAAAAAGAAAAAACAAAATTAGAACCGAGAACGTTGTCGTTTGAAGGTGACTGGGTGGTTTTACCATTTACTGGGTGGTAAATGGTAAGTGAGTTGAAGAAGGGTTAAAAAATAGAGACTCTGATAGGTAAATGAGTCTCCGATATATCGGTAGTCAATTGGAGACAGATAAATCCTGCCTTCCTAAAATAGATCACCAATATCCCCAATTGATCACCGATTTGATCACCGATATATCGGTGATCAATAATTGTGAAATGACTAAAATACCCCTTTCCCTGTGTCTGGAAGGCGCGTGTTAGTGGACTGAAAAAGTAGGTTTTCTCTCTCCTAAAACTCACCGGACCTCCGATTAAGGCACTTCCGGTCATCAATTCACGACACGCGCGGCGGTGTGTACCCCTGGGAGGGTAGGTACCACTACGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCACCGTTCTAATATT

Gene Information

NCBI Accession AFO59754.1
Location 180-560
Gene Name C1
Protein Name C1
Coding Region ATGTTTAGACCCATAGAATTAACAATGACGATCACATATGATAATAAGAGAGGGATGGAGTTCACTGTGAATGTGAGGTTGAGCAACAATTATTCCATCATCGTTCAGGTGGATTTGGTATCCACACGGTCACCGGCACTAGCCAAGACCAAGTTCTTGATCCCATACGGCCATCATGGGTTCACAGGTCCATTTGACTTCAACCGTCTTGAAGAAAGGGTATGTCAGCTGTTAAAGGTCATGTACAAGGATAAACACACAGGAGAATTCCGGCAAGAGGACATGGTCGAGACTATTGATATCCTGATGATGCACGAGGCTCCAGTGATTGATATTAATGTACATGATTTATATAGTGTGTATACGAGTGCAAGTGTATAA
Protein Sequence MFRPIELTMTITYDNKRGMEFTVNVRLSNNYSIIVQVDLVSTRSPALAKTKFLIPYGHHGFTGPFDFNRLEERVCQLLKVMYKDKHTGEFRQEDMVETIDILMMHEAPVIDINVHDLYSVYTSASV

References More References in PubMed

1

Detection and characterization of a new betasatellite: variation in disease symptoms of tomato leaf curl Pakistan virus-India due to associated betasatellite.

Kumar J, et al.  Arch Virol. 2013 Jan;158(1):257-61. doi: 10.1007/s00705-012-1486-5. Epub 2012 Sep 29.

PMID: 23053516
2

Interaction estimation of pathogenicity determinant protein βC1 encoded by Cotton leaf curl Multan Betasatellite with Nicotiana benthamiana Nuclear Transport Factor 2.

Nasim A, et al.  PeerJ. 2022 Nov 15;10:e14281. doi: 10.7717/peerj.14281. eCollection 2022.

PMID: 36405014
3

Functional analysis of a novel βV1 gene identified in a geminivirus betasatellite.

Hu T, et al.  Sci China Life Sci. 2020 May;63(5):688-696. doi: 10.1007/s11427-020-1654-x. Epub 2020 Feb 26.

PMID: 32107688
4

Comparison of phenotypes produced in response to transient expression of genes encoded by four distinct begomoviruses in Nicotiana benthamiana and their correlation with the levels of developmental miRNAs.

Amin I, et al.  Virol J. 2011 May 19;8:238. doi: 10.1186/1743-422X-8-238.

PMID: 21592402
5

A geminivirus betasatellite damages the structural and functional integrity of chloroplasts leading to symptom formation and inhibition of photosynthesis.

Bhattacharyya D, et al.  J Exp Bot. 2015 Sep;66(19):5881-95. doi: 10.1093/jxb/erv299. Epub 2015 Jun 25.

PMID: 26113193