Alternanthera yellow vein betasatellite

Basic Information

Abbreviation AlYVB
Genebank Accession DQ641716
Isolate VN-Hue-05
Download Genome |GFF3 |PEP |CDS

Genome

ACCGGTGGCGAGCGGAGTCTTTGGTGTTGACGGTGGGTCCCACATCTGAAATTGGGTCATAAATGGGCCAAAATGTGTAACTGGGTATGCAATTGGGCCTTCTTGTTGGGCTCTTTCAAATTTGCCTATACAGTAGTTCATTAACAATAATAAAATATATTTTATTATTTAATACTTATTTCATTCATTACATACGGATTAAGATACGTATTTATATACTAGCTATTGTCCCTATACCATATTCATCTTCTATTTCTATATCCTCAACAGCTGCTTCTTGCATCATCAGGATATCAATGGTCTGGACCATGTCCTCTTGTTTGAAATCCCGTATTGTCGATTCCTTGTACATTATACGTAATAAATTACGTATTCCTTCCTCTAAGTTATTGAAATTGAATGGTGGTATGATTCCACTATGTGCGTATGAGATCGTGTATATCTTCTTTGCCAGTGCTGGAGATTTTGTTGATATCAATTCAATCTGAACAACGATTGAATTGTCTTCCTTCAACTTTACATTAATGATGAATTCCATGCCTTTCTTGTTGTTGTATTTAATTGTCATATTTGTTCTTGTGACCGAAACGTTAGTTGTCTTTGTTTAAATAAGCATTTGGATATGCTATACATGGTCTGAAATTATTTACGTGTTCAGTTCTGTTTCATATAATCTATAGTGGATATCTTTATGTTTGATAGTGATATTGCTATTAAACATTTACTAATTAATCTGGATTAATTAAGTTAATATATATGATTATTTAGATTATCATATATTTGTCTAGAAATTAAAAAATGAAAAAAAAGAAACAAAAAAAACTAAAACAAAGAAACATAAACATATATAACTTATTCCTGAAAGGGAGCGCAGCGGGAAAAAAAAAACTCAAAACAAACTAACAAACCTAATTATAAAAAAAATAGAAAAATATAAACTTAAACAACTTCAAAAAAAAATAAAAAAAAAAACTAAAAAAAATTATTTTATTTTTACAGTTTACCTACAACAGTAAAAAAAAATAATTACAATTACCTAACAAGGTAAATAATTTGTCCCCGATAGGTAATTTTGTCCCCGATACATCGGTGCCTATTGGGGACATTGGAGACAATTATAAGTGGATTACCTAAAATACCCCTGAAATATAACAGATAGGCGCGTCGGAGTGCTTTGGTAAAGTAGGTTTCTCTCTCCTGAAACTCCCCGGAGACGATGATCGGAGGTGTTAACGGCCTCAATTTGCAACACGCGCGGCAGTACCAACACGGAGGTGGGCAAACCACTACGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCACCGTTATAATATT

Gene Information

NCBI Accession ABG26126.1
Location 212-568
Gene Name C1
Protein Name C1 protein
Coding Region ATGACAATTAAATACAACAACAAGAAAGGCATGGAATTCATCATTAATGTAAAGTTGAAGGAAGACAATTCAATCGTTGTTCAGATTGAATTGATATCAACAAAATCTCCAGCACTGGCAAAGAAGATATACACGATCTCATACGCACATAGTGGAATCATACCACCATTCAATTTCAATAACTTAGAGGAAGGAATACGTAATTTATTACGTATAATGTACAAGGAATCGACAATACGGGATTTCAAACAAGAGGACATGGTCCAGACCATTGATATCCTGATGATGCAAGAAGCAGCTGTTGAGGATATAGAAATAGAAGATGAATATGGTATAGGGACAATAGCTAGTATATAA
Protein Sequence MTIKYNNKKGMEFIINVKLKEDNSIVVQIELISTKSPALAKKIYTISYAHSGIIPPFNFNNLEEGIRNLLRIMYKESTIRDFKQEDMVQTIDILMMQEAAVEDIEIEDEYGIGTIASI

References More References in PubMed

1

Alternanthera yellow vein virus (AYVV); a betasatellite independent begomovirus infecting Sonchus palustris in Pakistan.

Nawaz-Ul-Rehman MS, et al.  Braz J Biol. 2022 Jun 13;82:e262248. doi: 10.1590/1519-6984.262248. eCollection 2022.

PMID: 35703634
2

Characterization of begomovirus components from a weed suggests that begomoviruses may associate with multiple distinct DNA satellites.

Mubin M, et al.  Virus Genes. 2010 Jun;40(3):452-7. doi: 10.1007/s11262-010-0470-y. Epub 2010 Mar 20.

PMID: 20306125