Radish leaf curl betasatellite

Basic Information

Abbreviation	RaLCuB
Genebank Accession	EF175734
Isolate	IN-Var-06
Download	Genome \|GFF3 \|PEP \|CDS

Genome

ACCGGTGGCGAGCGGATTTTTTTGCGTCGTTGTGGGACCCACTTGTTAGATCTGCAGAATAAATGGGCCTTTTTATGCTATTGGGCCTATATTTATTGGGCTTTGTATAATATATTTAAATTGGGCTTTGTAGTCATGAGAATAAGATAATAAAACAGTTTCATTGATTATCTGTATAAATACGCATTTATACAGATGAACGCGTATACACATCGTATTCATCCATTACATTAATGTCTATTACAGGAGCCTCTTCCATCATCAGCATATCAATTCCTTCTATCATGTCTTCTTGCTTGAATTCTCCTATAGTAGACTCTTTGTACATGATTGCTAACAGGTTGTGTATTCTTTCTTCCAGAGTGTTGAAGTTGAATGGTGGTATGATTCCACTATGCCCGTATGGAATCATGAATCTCCTTGTTGCTAGCCCCGGAGATCGTGTTGAGAATATTTGTATTTGCACTAGAATGGAGTCATGTTCTTTCAGGCGTACGTCTATGATGAATTCCATCCCTTTCTGGTTTTTGTATTTGATCGTCATTGTGTTGTGTGAGTGTTCATATATGATGAACACTCATTAAATAGAACATATATTTGTGATGTATGGTTATTATTGATATACGTGGTTTGTTTATGTTCATATATTATGTAGTGGAGATATTTGTTATGGATGTGGACGTTGATATTATTTGGTTTCGTGAGAGTGAGTTTTAATGAATCCTAATTATGATATAATTAGGAAGAAAGAAAGAAAAAGAAAAGAATGAAAAAATAGAAAATGAAAAAAATAGAAAACTACATAAACTATAAATTCTATTCTATGAAAATGGTCGCGCAGCGAAACAGAAAACCGAAACTAACAAAAGAAATAAAAAAAATGAAAAAAGAAATAAACAACAGATGAAACGTGAGAAGAGAAAATAAAAACAAGAAACATCAGTGGTCCCCACTGAATAAATAAAAATAAAAAAAGAAAAAGAAGAAAATGATTTAATCCTTATACTTGAGTTACTTACTGTTTTACCGAACGGTAAAATAGTAATTGATATTTACACAAGGGTAAATATCTGAGTCCCCGATAGGTAAATGTGTCCCCAATATATCGGGGACTCAATTGGTGACCCATATTTTGCTTTCCTAAAATACCCTTGTCTCTGTGTCTGGTAGGCGCGTGGGAGTGGACTGAAAAAGTAGAATTTCTCTCTCCTAAAACTCGTCGGAACTCCGATTAAGGCACTTCCGGTCACCAATTTGCGACACGCGCGGCGGTGCGTACCCCTGGGAGGGTAGGGTACCACTACGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCACCGTTCTAATATT

Gene Information

NCBI Accession	ABP04010.1
Location	188-544
Gene Name	C1
Protein Name	C1
Coding Region	ATGACGATCAAATACAAAAACCAGAAAGGGATGGAATTCATCATAGACGTACGCCTGAAAGAACATGACTCCATTCTAGTGCAAATACAAATATTCTCAACACGATCTCCGGGGCTAGCAACAAGGAGATTCATGATTCCATACGGGCATAGTGGAATCATACCACCATTCAACTTCAACACTCTGGAAGAAAGAATACACAACCTGTTAGCAATCATGTACAAAGAGTCTACTATAGGAGAATTCAAGCAAGAAGACATGATAGAAGGAATTGATATGCTGATGATGGAAGAGGCTCCTGTAATAGACATTAATGTAATGGATGAATACGATGTGTATACGCGTTCATCTGTATAA
Protein Sequence	MTIKYKNQKGMEFIIDVRLKEHDSILVQIQIFSTRSPGLATRRFMIPYGHSGIIPPFNFNTLEERIHNLLAIMYKESTIGEFKQEDMIEGIDMLMMEEAPVIDINVMDEYDVYTRSSV

References More References in PubMed

1	Functional characterization of a new ORF betaV1 encoded by radish leaf curl betasatellite. Gupta N, et al. Front Plant Sci. 2022 Sep 20;13:972386. doi: 10.3389/fpls.2022.972386. eCollection 2022. PMID: 36212370
2	Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite. Shakir S, et al. Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y. PMID: 30165872
3	Biology and interactions of two distinct monopartite begomoviruses and betasatellites associated with radish leaf curl disease in India. Singh AK, et al. Virol J. 2012 Feb 16;9:43. doi: 10.1186/1743-422X-9-43. PMID: 22339942
4	Evidence of the Association of Radish leaf curl virus with Tobacco Yellow Leaf Curl Disease in Bihar, India. Singh MK, et al. Indian J Virol. 2012 Jun;23(1):64-9. doi: 10.1007/s13337-012-0060-9. Epub 2012 Mar 4. PMID: 23730006
5	A geminivirus betasatellite damages the structural and functional integrity of chloroplasts leading to symptom formation and inhibition of photosynthesis. Bhattacharyya D, et al. J Exp Bot. 2015 Sep;66(19):5881-95. doi: 10.1093/jxb/erv299. Epub 2015 Jun 25. PMID: 26113193
6	A geminivirus betasatellite encoded betaC1 protein interacts with PsbP and subverts PsbP-mediated antiviral defence in plants. Gnanasekaran P, et al. Mol Plant Pathol. 2019 Jul;20(7):943-960. doi: 10.1111/mpp.12804. Epub 2019 Apr 15. PMID: 30985068
7	Host-specific adaptation of diverse betasatellites associated with distinct Indian tomato-infecting begomoviruses. Ranjan P, et al. Virus Genes. 2014 Apr;48(2):334-42. doi: 10.1007/s11262-013-1031-y. Epub 2014 Jan 3. PMID: 24384936