Papaya leaf curl India betasatellite

Basic Information

Abbreviation	PaLCuINA
Genebank Accession	HM143906
Isolate	India-Panipat-08
Download	Genome \|GFF3 \|PEP \|CDS

Genome

ACCGTGGGCGAGCGATTTTTTTCCGGCCTCTGCGGGTCCCACACACAGTCAATGGGTCAACTGGACCTTGCTTTTGTAATGGACCAGTAGATTCGTAACTGGGCCTAATGCTTGTTTGCGGCCCAAAACGACAAATTGAAAAATTGGGCCTAATTGGACTCATAACTAAAATAGTTCTTTTATCCATTAATATTTGGAATACATTCAGACAGTGACATTGTTTGAAACATCATATGCTACGTCCAGGTTGATGTTTTCAACGTTGGCCTCTTGCATCATCAGAAGATCTACCATTTCGACCAATTCCTCGTGCTTGACCTTCGCGTACGTTGCGTCCTTGTACAGCAGGTCTATCATTCCCTGTATCCCTTCTTCTAAGCCGTTGAAGTCGAATGGCGCAATGATCCCATCGTGCCCGTATGGTATTTTGAACTTCCTCTTGATAAGTGCCGGAGCTCTGGTGGAGAAGAACTCTATCTCAACCATCACAAACTTCGTCCCGTGCAACCTGACCTTGATGATGAATCTCAGACCATTCGAGTTCGTGTAACGGATTGTCATCTTTGTATGCACATGAGTCTATATTGAGACCCAATATACAGGGGAGAGTTGCAAGAGCGGTCAATTGGGTCCTCAATTTAGTCAACATGCCGGTGACATAACCATCAAAGCATGGAAAGAAAAAAAATGAAAATGAAGAAACGTTGATCATGGAGATGATGAACGTGAGAGAAAAAAAAGAAAAAAAAAGGAATAAATACACAGCAAGACTTGAGAAGGACGTCCCTCCAAAAAAACTAGGTAGCGCAGCGGCCAAAAACAACAAACCACTCAACAAGGAAATCTACAACAATCAAACCAAAAAGGAACCCTAAACCCCAAAATTCTCACTTTATATGCCCGTACTTGAAAACGTCGTCGTTTGAGAAGTAATAAAAGAAAAGAAAATAAAAACCTCATCTACATCTACATTTATTGAATTTCGACATGTGTTTACCATTTACCGCGCAGTAAATGGTAATTAGGTTAATTTGTTGGTTAAAAATAGAGGACCTGATAGGTAAATGAGGACCCAATATATCGGGGATCAATTGGGTCTCATATATTGACATTTTCCCAAACTACCCCCGCTTTTATCAGTAACAGGCGCGTCGGAGTGCGGTGTTAAAGTTAACATTCTCTCTCCCCATTTGGCCGGAGATGGCGTAACTGGCGTTTCCCGGCATCATTTTGCGACACGCGCGGCGGTGCGTACCCCTGGGAGGGTAGAAACCTCTACGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCCACGCTCTAATATT

Gene Information

NCBI Accession	ADO95332.1
Location	205-561
Protein Name	C1 protein
Coding Region	ATGACAATCCGTTACACGAACTCGAATGGTCTGAGATTCATCATCAAGGTCAGGTTGCACGGGACGAAGTTTGTGATGGTTGAGATAGAGTTCTTCTCCACCAGAGCTCCGGCACTTATCAAGAGGAAGTTCAAAATACCATACGGGCACGATGGGATCATTGCGCCATTCGACTTCAACGGCTTAGAAGAAGGGATACAGGGAATGATAGACCTGCTGTACAAGGACGCAACGTACGCGAAGGTCAAGCACGAGGAATTGGTCGAAATGGTAGATCTTCTGATGATGCAAGAGGCCAACGTTGAAAACATCAACCTGGACGTAGCATATGATGTTTCAAACAATGTCACTGTCTGA
Protein Sequence	MTIRYTNSNGLRFIIKVRLHGTKFVMVEIEFFSTRAPALIKRKFKIPYGHDGIIAPFDFNGLEEGIQGMIDLLYKDATYAKVKHEELVEMVDLLMMQEANVENINLDVAYDVSNNVTV

References More References in PubMed

1	Association of tomato leaf curl Gujarat virus and tomato leaf curl Bangladesh betasatellite on papaya showing typical leaf curl symptoms in North India. Varun P, et al. 3 Biotech. 2018 May;8(5):243. doi: 10.1007/s13205-018-1254-7. Epub 2018 May 8. PMID: 29744275
2	In silico identification of papaya genome-encoded microRNAs to target begomovirus genes in papaya leaf curl disease. Srivastava A, et al. Front Microbiol. 2024 Mar 21;15:1340275. doi: 10.3389/fmicb.2024.1340275. eCollection 2024. PMID: 38605706
3	Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite. Shakir S, et al. Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y. PMID: 30165872
4	Molecular Characterization of a Begomovirus, alpha-Satellite, and beta-Satellite Associated with Leaf Curl Disease of Parthenium hysterophorus in India. Kumar S, et al. Plant Dis. 2016 Nov;100(11):2299-2305. doi: 10.1094/PDIS-09-15-0982-RE. Epub 2016 Aug 30. PMID: 30682918
5	Biology and interactions of two distinct monopartite begomoviruses and betasatellites associated with radish leaf curl disease in India. Singh AK, et al. Virol J. 2012 Feb 16;9:43. doi: 10.1186/1743-422X-9-43. PMID: 22339942
6	Natural association of two different betasatellites with Sweet potato leaf curl virus in wild morning glory (Ipomoea purpurea) in India. Swapna Geetanjali A, et al. Virus Genes. 2013 Aug;47(1):184-8. doi: 10.1007/s11262-013-0901-7. Epub 2013 Mar 26. PMID: 23529301
7	Characterization of betasatellite associated with the yellow mosaic disease of grain legumes in Southern India. Satya VK, et al. Acta Virol. 2013;57(4):405-14. doi: 10.4149/av_2013_04_405. PMID: 24294953
8	Evolutionary Dynamics of Begomoviruses and Its Satellites Infecting Papaya in India. Srivastava A, et al. Front Microbiol. 2022 May 12;13:879413. doi: 10.3389/fmicb.2022.879413. eCollection 2022. PMID: 35685936
9	Senna leaf curl virus: a novel begomovirus identified in Senna occidentalis. Kumar J, et al. Arch Virol. 2016 Sep;161(9):2609-12. doi: 10.1007/s00705-016-2931-7. Epub 2016 Jun 17. PMID: 27314944
10	Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.). Venkataravanappa V, et al. Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1. PMID: 35991698