Ludwigia yellow vein betasatellite

Basic Information

Abbreviation LuYMB
Genebank Accession AJ965541
Isolate CN-G37-06
Download Genome |GFF3 |PEP |CDS

Genome

ACCGGTGGCGAGCGGTGCCTCTGGTGTTCAGTTGGTGGGACCCACTTTCTGGGGAAGAAGAAAGACTTAATGGGCCTGGCACAGGCCCAGCAATATTGGTGGGCTTGGTAAAATAACGGAGTCGGCCTTTAATAAGTAGCACTTTATTGACTTGACTTGGAACGTACAGGCAATCAAGTTATACATACATGAGAAATACGTATTTATACAATGACCCCATTAAATACATGGCAGGCCTCCTCTAAATCTATATCCATCACTGGAGCCTCTGCCATCATGATCATATCGATCATCTCTATCATGTCCTCCTGCTGGAAATCTCCAATGGTAGATTCCTTGTACATGATTTTGAGTATATTGCATATCCCCTCCTCCAAACTGTTGAAGTCGAATGGTGGTATGATCCCGTGGTGGCCGTATGGAATGAGGAACTTCTTCTTGGATAGTGCTGCTGACTTGGTGGAGAACAAGTCAATCTGCACTATGATTGAATCATCAGCCCTCAATTTGACGTTGATGATGAATTGCATGCCCTTCTTGTTGTTGTACGTGATCGTCATTGTTGTTGTTGTGCTCTATCCTTCCATTGCATCCATTTAAATAGTGGACGTGCAGGATGATATATGGAGAAGAAACGTCTACGTGTTCAATTGCTGTTCTAGTATTTTCATGTTGGTGGAGATATTTGTGTGTGATAGTGACATCTATCAAACATGTAATTAAAATAAAGAAGAAGAGATGATCCTAATCATCCCCATGATTAGGGAGAAGATGCAAATGAGAAGCAAAAACCACATAAAACTGAAGAAAAAGAAGAACTAGAAAAAAGAAATATATATTCAGAAAGAGAAGGGAGCGCAGCGACAAAACAAACAGACCCAGCGTTAAACAATAAACCATTGAAAGAAAAATTAAATAATCAGCAAAAGGACGAAAAAAATGGGCCCCATTTAAAAAAGTGCAAGTCCGTACACCACTTGTTATTGACTGAGTTACCGCACGGTTATTCAGTAACTGCTATTTACCCCTGGTAAAGAGGAGAGAGTTAAATGAGCCCCCGATAGGTAAATGAGCCCCCAATACCCCAATTGATATCGGGGGCTTTGGGTACCCATAGTTTTTACTGGACGAAAATATCCCTGCTTTTCCTCTCACAACCGGCGCGTGAGGTGCGTGAATAAAGTGGCACTTTCTCTCTCCATTTTGGCCGGAAAACGCCGTTTGCGACACTTCCGGTGATCAATTTGCGACACGCGCGGCGGTGTGTACCCCTGGGAGGGTAGAAACCACTACGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCACCGTTATAATATT

Gene Information

NCBI Accession CAI84288.1
Location 204-560
Gene Name c1
Protein Name C1 protein
Coding Region ATGACGATCACGTACAACAACAAGAAGGGCATGCAATTCATCATCAACGTCAAATTGAGGGCTGATGATTCAATCATAGTGCAGATTGACTTGTTCTCCACCAAGTCAGCAGCACTATCCAAGAAGAAGTTCCTCATTCCATACGGCCACCACGGGATCATACCACCATTCGACTTCAACAGTTTGGAGGAGGGGATATGCAATATACTCAAAATCATGTACAAGGAATCTACCATTGGAGATTTCCAGCAGGAGGACATGATAGAGATGATCGATATGATCATGATGGCAGAGGCTCCAGTGATGGATATAGATTTAGAGGAGGCCTGCCATGTATTTAATGGGGTCATTGTATAA
Protein Sequence MTITYNNKKGMQFIINVKLRADDSIIVQIDLFSTKSAALSKKKFLIPYGHHGIIPPFDFNSLEEGICNILKIMYKESTIGDFQQEDMIEMIDMIMMAEAPVMDIDLEEACHVFNGVIV

References More References in PubMed

1

Association of a distinct strain of hollyhock yellow vein mosaic virus and Ludwigia leaf distortion betasatellite with yellow vein mosaic disease of hollyhock (Alcea rosea) in India.

Srivastava A, et al.  Arch Virol. 2014 Oct;159(10):2711-5. doi: 10.1007/s00705-014-2108-1. Epub 2014 May 9.

PMID: 24810100
2

Sequence variability and phylogenetic relationship of betasatellite isolates associated with yellow vein mosaic disease of mesta in India.

Das S, et al.  Virus Genes. 2008 Dec;37(3):414-24. doi: 10.1007/s11262-008-0287-0. Epub 2008 Sep 20.

PMID: 18807163
3

Molecular characterization of a distinct monopartite begomovirus associated with betasatellites and alphasatellites infecting Pisum sativum in Nepal.

Shahid MS, et al.  Virus Genes. 2017 Apr;53(2):300-306. doi: 10.1007/s11262-016-1424-9. Epub 2016 Dec 23.

PMID: 28012011
4

Distribution, epidemiology and molecular variability of the begomovirus complexes associated with yellow vein mosaic disease of mesta in India.

Roy A, et al.  Virus Res. 2009 May;141(2):237-46. doi: 10.1016/j.virusres.2008.11.022. Epub 2009 Jan 31.

PMID: 19428737