Vernonia yellow vein betasatellite

Basic Information

Abbreviation VYVB
Genebank Accession FN435836
Isolate IN-Mad-09
Download Genome |GFF3 |PEP |CDS

Genome

ACCGTCGCGAGTCGGGGAGAAAGTGGGCCCCACCTAGGATGACGTGGAAAATAGGAATTTATTTAATTGGAAACTGAAAAAGATTTTTATAAGTTACGCAGTTTGTCATTTTTAGTCCTTGTTCTTTTGTTTTTTTTGTTTTGTCCCTCCTTGTATCATACCATACGTATATATGTATTTTTTACGTATTATACTGAATACATTTAATTATTGAAAAATAAATATTTATTTATACCGAAATAACAGAATTACAACTGTATGGTTCTAGTACAAGTAATCCTATGAAATCGGTATTCTCTAACATGATTACATCTATTGCCTCCTATCATGTCTTCTGGTTTGAAGTGGTCGATGTCATGGAACATGACTTCGATGGTGTTCCTGATCTGTGTTTCTAGTCCGTTGAAGTCGAAAGGTACTAGTATTGCCCCGTACCCATAGTACATGGTGTACGTGTGCTTGGTGATGATGTTCCTGTTGGTTCTTGTGACCTGGACTATGATTTTGAAGCATTCGTTGAGTTTGGCATCGATGGTGAACTTGATGCCTTTGTTTGTGGTGTGTTTGATCGTCATTGTTTTGGGGTGTGTTTTTCTGCTGTTGTTTCTCATGGTATTTAAAGGAGTCATTTGATGTAAAGGTTGTTATATTTGTAGACGTGTTTTGTTCTGGATCATTTATAGTGGTTGTTATGTGTTGTCTTTGTTGATGTGACATTAAATGTAATTAGTATAATTACATTTTGATTGTGCTAATCTTTGATTAGTGTACATAATTTACGATAAAATAAAGAATGATATTGAAAATATCATTAATAAAAAAGAAGAGAATAAAGAAAAAAAGACTGAAAATAAAATAGAAAACATTAATTAAAAAAAGAAATGGAGCGCAGCGGAATGGACTGGGCCTGAAAAAATTGAAACGTGTCAAAAATAACTGCGGTTAAAAAAATGTACTGTGTTAAAATTAACACAGGTAAAAAAAAGAAGGTAAAGAAAAAATCTGGACTTGTACTTTGTGCATTGTGAGTGTTCCCGTCTTTCACACAGTGTTGAGGTGAGTGTGTGTTTTGAGGACCCGATAGGATGAGACCCAATATATTGGGTCTCATATTGGGGATAAGTTCCGTACAGGTGGTGAAATGACTAAAATACCCCTCCGTCTTCATATGAAACCTGCAACTAGTGCGCTTCAAAAGTGGCATTTTCTCTCTCCTACTTTTCCACCATAGCCATTTCTCGAGCTATCTTCGTCGTTTCAATCGGGATCTTTCAGGTCTCCTCAATCTGGACATGTGAAAGGCTTCCGCTAGCTCTGCAGCAGCCTGACGCTACGCCGGAGGGCAACGAGCGACGTATAATATT

Gene Information

NCBI Accession CBA18271.1
Location 249-629
Gene Name C1
Protein Name C1 protein
Coding Region ATGACTCCTTTAAATACCATGAGAAACAACAGCAGAAAAACACACCCCAAAACAATGACGATCAAACACACCACAAACAAAGGCATCAAGTTCACCATCGATGCCAAACTCAACGAATGCTTCAAAATCATAGTCCAGGTCACAAGAACCAACAGGAACATCATCACCAAGCACACGTACACCATGTACTATGGGTACGGGGCAATACTAGTACCTTTCGACTTCAACGGACTAGAAACACAGATCAGGAACACCATCGAAGTCATGTTCCATGACATCGACCACTTCAAACCAGAAGACATGATAGGAGGCAATAGATGTAATCATGTTAGAGAATACCGATTTCATAGGATTACTTGTACTAGAACCATACAGTTGTAA
Protein Sequence MTPLNTMRNNSRKTHPKTMTIKHTTNKGIKFTIDAKLNECFKIIVQVTRTNRNIITKHTYTMYYGYGAILVPFDFNGLETQIRNTIEVMFHDIDHFKPEDMIGGNRCNHVREYRFHRITCTRTIQL

References More References in PubMed

1

A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina.

Mollel HG, et al.  Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29.

PMID: 27900540
2

A new begomovirus associated with alpha- and betasatellite molecules isolated from Vernonia cinerea in China.

Zulfiqar A, et al.  Arch Virol. 2012 Jan;157(1):189-91. doi: 10.1007/s00705-011-1137-2. Epub 2011 Oct 18.

PMID: 22006044
3

Molecular characterization of a distinct begomovirus species from Vernonia cinerea and its associated DNA-beta using the bacteriophage Phi 29 DNA polymerase.

Packialakshmi RM, et al.  Virus Genes. 2010 Aug;41(1):135-43. doi: 10.1007/s11262-010-0484-5. Epub 2010 Apr 17.

PMID: 20401528