Tomato leaf curl Nepal betasatellite

Basic Information

Abbreviation ToLCNPB
Genebank Accession AJ542492
Isolate NP-Jhapa
Download Genome |GFF3 |PEP |CDS

Genome

ACCGGTGGCGAGCGGATTTTTTGGTGTCCTTGTGGGTCCCACTTGGGAATTGTGCAGAATAACTGGGCCTGTTTTGAAATTGGGCCTTATTTAAATTGGGCCTTGGACCGTATTTTTATTGGGCTGTTAACAAAAGACGAAGTTGGGCCATAGATAATAGTGAATTTATTCATAAAACATTTATTTTATTACATGGAAAATACGTATTTAAACAGATGAGTTCGTATACATTTCGTATTCATCCATTACATCAATATCCACCACTGTGGCCTCGTTCATCATAACAAGATCGATTATCTCTACCATGTCTTCTTGCTTGAATTCCCTCACAGATGATTCCTTGTACATCATATCTATCATGTTACGTATTTTCTCTTCAAGTGCATTGAAATTGAAGGGTGGTATGATTCCACTATGGCCGTATGGAATCATGAATTGTTTTGTTGCTAGTACTGGGGATCCTGTTGAGAAGACTCTAATATGAACTAGAATTGAGTTGTCCTCCTTCAAACGCACGTTGATGATGAATTCCATTCCTTTCTTGTTCTTGTATTTGATCGTCATTCTTCAATTGTGCTTTAGCTTTGATCATCTACACCCGTTAAATAGATAAGAATATGTGTATATATGGTTATTGTTCATTTACGTGTTTCTATCGTGTTCACATGTTTGGTAGTGGAGATATTTGTAACTGAGGTGACGTTGTTTCTAATTGTGATGTTAATGTGTAATTAGAAATAAAATTTGTAGTTATACGTTAGTACTAATCATAACATGATTAGGAAAGAAATAAAATAAAAAAGAAAAGAAAAAAGAAAAAAATTGAAATTAAAATAAACAAAGCCATCCATTATCCTAAAATGGTAGCGCAGCGAAACGAAAAACCGAAACTTGAGGAAGGAGATTAATAAAACATAACAAAAACTAAATCATTTACAATCATTAAAACCTAAGAAGATAAATCAGTGGGGTCCACTGATTGAAAAATAAAAAAAAAGAAAAGAAATTGATTTACCACACGGTAAATCAGTAATTTTTAATTACCGAGGTGAATGGGTAAAAAAATGAGACACCAATAGGTAAATGAGACACCGATATATCGGGGGCTCAATTGGGGTCTCTTATGTTAATTTCCCAAAATACCCCTGTCCCTGTGTCTGGTAGGCGCGTGAGAGTGGACTGAAAAAGTAGATTTTCTCTCTCCTAAAACTCCTCCGACCTCCGATTCAGGCACTTCCGGTCACCAATTTGCGACACGCGCGGCGGTGTGTACCCCTGGGAGGGTAGGTACCACTCGCTACGCAGCAGCCTTAGCTACGCCGGAGCTTAGCTCGCCACCGTTATAATATT

Gene Information

NCBI Accession CAD65757.1
Location 208-564
Gene Name C1
Protein Name C1 protein
Coding Region ATGACGATCAAATACAAGAACAAGAAAGGAATGGAATTCATCATCAACGTGCGTTTGAAGGAGGACAACTCAATTCTAGTTCATATTAGAGTCTTCTCAACAGGATCCCCAGTACTAGCAACAAAACAATTCATGATTCCATACGGCCATAGTGGAATCATACCACCCTTCAATTTCAATGCACTTGAAGAGAAAATACGTAACATGATAGATATGATGTACAAGGAATCATCTGTGAGGGAATTCAAGCAAGAAGACATGGTAGAGATAATCGATCTTGTTATGATGAACGAGGCCACAGTGGTGGATATTGATGTAATGGATGAATACGAAATGTATACGAACTCATCTGTTTAA
Protein Sequence MTIKYKNKKGMEFIINVRLKEDNSILVHIRVFSTGSPVLATKQFMIPYGHSGIIPPFNFNALEEKIRNMIDMMYKESSVREFKQEDMVEIIDLVMMNEATVVDIDVMDEYEMYTNSSV

References More References in PubMed

1

Association of an alphasatellite with tomato yellow leaf curl virus and ageratum yellow vein virus in Japan is suggestive of a recent introduction.

Shahid MS, et al.  Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189.

PMID: 24424499
2

Complete nucleotide sequence of a monopartite Begomovirus and associated satellites infecting Carica papaya in Nepal.

Shahid MS, et al.  Virus Genes. 2013 Jun;46(3):581-4. doi: 10.1007/s11262-013-0888-0. Epub 2013 Feb 9.

PMID: 23397078