Duranta leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029245.1
Isolate Pakistan: Bhera
Release date 2018/8/26
Submitter Anwar,S., Tahir,M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038980
ACCGGATGGCCGCGATTTTTTTGTCCCCTCGTGGGTCCCACCAAGTGGTCCATGGACAAATGGCCCAATCAAAAGCACTTCTGAAAGCTTTATTGATGTGTGGGCCCCATATATAATGACTTGCTGAGTAAGTTTGTTGTAAACATGTGGGACCCACTATTGAATGAGTTCCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATATACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGACTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTACGTGATAGGCGTCCTGTTGACAAGCCTCAAGATTTTGGTGATGTGTTCAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTGCATCGTGATAGGTACCAGGTGCTTAGGAAGTGGCATGCAACGGTTACAGGCGGTCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACACTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATTTTAAATTTTATATCATGATCCTCAATTACATCAATTGTGTCATGGAGTACATCATATAGTACATGTTTAAATGCCCTAATACAATTATTTATACTAAGCACTCCTAATCTATCTAAATATCTTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCCAGTCTGAGGATGTAAACGAGTGTGGATCCTCAAGCCCAAGAAACACTTCATTATCCCCAGTTCCTTCCTGATGTTGTGATTGAACTGGACCCTGATGTGGATGATGTCGTGGTTCATGTTGAGTGGCCTTTGGTCGTGGTCTGAGATCTTGAAATAAAGGGGATTTGGGACTTCCCAGATATACACGCCATTCATTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCAGCCACACTCGAGGTCAACCCTCTTACGCCGGATGGCTCTACGCTTGGCTAGCCTGTGTTGGACCTTGATTGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATTCTGCATTCTTTATAGCCCACGACTTCAGTGCTGAGTTCTTTTCCTCCTCTAAGAACTCTTTATAGCTGGAGTTGGGCCCAGGATTGCATAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGATGTTGTACCATGCATCATTTGAATAGATTTTAGGGCTCAGATCTAAATGGCCACATAAATAATTATGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTATGACGATACTTTTAGGTCTCAAAGGCCGCGCAGCGGCACCCACCACATTTTCAGAGGCCCATTCCTCTATGGCCTCTGGGACTTGATCAAACGAAGAAGAAAGAAAAGGGGAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCTAAAGCTGCTTCAGCTGAACCTGCATTTAGCGCCTTTGCTGCAACATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGATGAGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGTGTGGATGTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGGATTTACCCTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAAGAAATATTTTTAAGGAGTTCGAGCATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTTTTGGCTTTAACTTGGAACTGATGAGTACGAGGCATATTGAATTGGGTGCTCTCTAAAACTCTGAGGAATGGGGATCTTTGGGTGCCTATTTATATGGAGCACCCAAATGGCCTTTTCGTAATTTTGACATAAAATTCAAAATTCAAATTTCAAATCCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508378.1
Location 145-510
Protein Name V2
Coding Region ATGTGGGACCCACTATTGAATGAGTTCCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATATACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICEPCCCPHCPRHKGKGMGEQAHEQKAQDIQDVQKPRCSEGM

NCBI Accession YP_009508379.1
Location 305-1075
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATATACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGACTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTACGTGATAGGCGTCCTGTTGACAAGCCTCAAGATTTTGGTGATGTGTTCAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTGCATCGTGATAGGTACCAGGTGCTTAGGAAGTGGCATGCAACGGTTACAGGCGGTCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACACTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009508380.1
Location 1072-1476
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAATGAATGGCGTGTATATCTGGGAAGTCCCAAATCCCCTTTATTTCAAGATCTCAGACCACGACCAAAGGCCACTCAACATGAACCACGACATCATCCACATCAGGGTCCAGTTCAATCACAACATCAGGAAGGAACTGGGGATAATGAAGTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTAAGATATTTAGATAGATTAGGAGTGCTTAGTATAAATAATTGTATTAGGGCATTTAAACATGTACTATATGATGTACTCCATGACACAATTGATGTAATTGAGGATCATGATATAAAATTTAAAATTTATTAA
Protein Sequence MDSRTGESITAAQAMNGVYIWEVPNPLYFKISDHDQRPLNMNHDIIHIRVQFNHNIRKELGIMKCFLGLRIHTRLHPQTGHFLRVFKTQVLRYLDRLGVLSINNCIRAFKHVLYDVLHDTIDVIEDHDIKFKIY

NCBI Accession YP_009508381.1
Location 1217-1624
Protein Name transcriptional activator protein
Coding Region ATGCAGAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAATGAATGGCGTGTATATCTGGGAAGTCCCAAATCCCCTTTATTTCAAGATCTCAGACCACGACCAAAGGCCACTCAACATGAACCACGACATCATCCACATCAGGGTCCAGTTCAATCACAACATCAGGAAGGAACTGGGGATAATGAAGTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAA
Protein Sequence MQNSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCSYYVHINCHNHGFTHRGIHHCSSSNEWRVYLGSPKSPLFQDLRPRPKATQHEPRHHPHQGPVQSQHQEGTGDNEVFLGLEDPHSFTSSDWAFLKSL

NCBI Accession YP_009508382.1
Location 1548-2612
Protein Name replication associated protein
Coding Region ATGCCTCGTACTCATCAGTTCCAAGTTAAAGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAACTCCTTAAAAATATTTCTTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAATCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCCACACAATTCCACCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAAAGGCGCTAAATGCAGGTTCAGCTGAAGCAGCTTTAGCAATAATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCGTTTGATCAAGTCCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGGTGGGTGCCGCTGCGCGGCCTTTGAGACCTAAAAGTATCGTCATAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCTAGGTCACTGGGTCCACATAATTATTTATGTGGCCATTTAGATCTGAGCCCTAAAATCTATTCAAATGATGCATGGTACAACATCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTATGCAATCCTGGGCCCAACTCCAGCTATAAAGAGTTCTTAGAGGAGGAAAAGAACTCAGCACTGAAGTCGTGGGCTATAAAGAATGCAGAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCGTAG
Protein Sequence MPRTHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQIDGRSARGGQQTANDVAAKALNAGSAEAALAIIREKLPKDFIFQYHNLKNNLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASENVVGAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLEEEKNSALKSWAIKNAEFITLTEPLYSGTNQGPTQASQA

NCBI Accession YP_009508383.1
Location 2198-2455
Protein Name C4
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAATCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCCACACAATTCCACCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAAAGGCGCTAA
Protein Sequence MGLCISMPSSSSRVNPSSETPDISMSLTLIHPHNSTQTSRELSPHPMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRR

References More References in PubMed

1

Cross species transmission and recombination dynamics of chilli leaf curl virus: implications for host range expansion and LAMP-based detection.

Devaraj, et al.  3 Biotech. 2025 Aug;15(8):260. doi: 10.1007/s13205-025-04434-y. Epub 2025 Jul 19.

PMID: 40693173
2

Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan.

Lal A, et al.  Viruses. 2022 Sep 30;14(10):2166. doi: 10.3390/v14102166.

PMID: 36298721
3

Genomic properties of allamanda leaf mottle distortion virus, a new begomovirus from golden trumpet (Allamanda cathartica) in India.

Jailani AAK, et al.  Arch Virol. 2021 Oct;166(10):2905-2909. doi: 10.1007/s00705-021-05179-8. Epub 2021 Aug 12.

PMID: 34383166
4

Identification of a new begomovirus infecting Duranta repens in Pakistan.

Anwar S, et al.  Arch Virol. 2018 Mar;163(3):809-813. doi: 10.1007/s00705-017-3672-y. Epub 2017 Dec 9.

PMID: 29224128
5

Aleurothrixus trachoides (Back) can transmit begomovirus from Duranta to potato, tomato and bell pepper.

Chandrashekar K, et al.  J Biosci. 2020;45:36.

PMID: 32098915