Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_003029245.1 |
Isolate | Pakistan: Bhera |
Release date | 2018/8/26 |
Submitter | Anwar,S., Tahir,M. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508378.1 |
---|---|
Location | 145-510 |
Protein Name | V2 |
Coding Region | ATGTGGGACCCACTATTGAATGAGTTCCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATATACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTGA |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICEPCCCPHCPRHKGKGMGEQAHEQKAQDIQDVQKPRCSEGM |
NCBI Accession | YP_009508379.1 |
---|---|
Location | 305-1075 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATATACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGACTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTACGTGATAGGCGTCCTGTTGACAAGCCTCAAGATTTTGGTGATGTGTTCAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTGCATCGTGATAGGTACCAGGTGCTTAGGAAGTGGCATGCAACGGTTACAGGCGGTCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACACTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009508380.1 |
---|---|
Location | 1072-1476 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAATGAATGGCGTGTATATCTGGGAAGTCCCAAATCCCCTTTATTTCAAGATCTCAGACCACGACCAAAGGCCACTCAACATGAACCACGACATCATCCACATCAGGGTCCAGTTCAATCACAACATCAGGAAGGAACTGGGGATAATGAAGTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTAAGATATTTAGATAGATTAGGAGTGCTTAGTATAAATAATTGTATTAGGGCATTTAAACATGTACTATATGATGTACTCCATGACACAATTGATGTAATTGAGGATCATGATATAAAATTTAAAATTTATTAA |
Protein Sequence | MDSRTGESITAAQAMNGVYIWEVPNPLYFKISDHDQRPLNMNHDIIHIRVQFNHNIRKELGIMKCFLGLRIHTRLHPQTGHFLRVFKTQVLRYLDRLGVLSINNCIRAFKHVLYDVLHDTIDVIEDHDIKFKIY |
NCBI Accession | YP_009508381.1 |
---|---|
Location | 1217-1624 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCAGAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAATGAATGGCGTGTATATCTGGGAAGTCCCAAATCCCCTTTATTTCAAGATCTCAGACCACGACCAAAGGCCACTCAACATGAACCACGACATCATCCACATCAGGGTCCAGTTCAATCACAACATCAGGAAGGAACTGGGGATAATGAAGTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAA |
Protein Sequence | MQNSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCSYYVHINCHNHGFTHRGIHHCSSSNEWRVYLGSPKSPLFQDLRPRPKATQHEPRHHPHQGPVQSQHQEGTGDNEVFLGLEDPHSFTSSDWAFLKSL |
NCBI Accession | YP_009508382.1 |
---|---|
Location | 1548-2612 |
Protein Name | replication associated protein |
Coding Region | ATGCCTCGTACTCATCAGTTCCAAGTTAAAGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAACTCCTTAAAAATATTTCTTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAATCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCCACACAATTCCACCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAAAGGCGCTAAATGCAGGTTCAGCTGAAGCAGCTTTAGCAATAATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCGTTTGATCAAGTCCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGGTGGGTGCCGCTGCGCGGCCTTTGAGACCTAAAAGTATCGTCATAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCTAGGTCACTGGGTCCACATAATTATTTATGTGGCCATTTAGATCTGAGCCCTAAAATCTATTCAAATGATGCATGGTACAACATCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTATGCAATCCTGGGCCCAACTCCAGCTATAAAGAGTTCTTAGAGGAGGAAAAGAACTCAGCACTGAAGTCGTGGGCTATAAAGAATGCAGAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCGTAG |
Protein Sequence | MPRTHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQIDGRSARGGQQTANDVAAKALNAGSAEAALAIIREKLPKDFIFQYHNLKNNLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASENVVGAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLEEEKNSALKSWAIKNAEFITLTEPLYSGTNQGPTQASQA |
NCBI Accession | YP_009508383.1 |
---|---|
Location | 2198-2455 |
Protein Name | C4 |
Coding Region | ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAATCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCCACACAATTCCACCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAAAGGCGCTAA |
Protein Sequence | MGLCISMPSSSSRVNPSSETPDISMSLTLIHPHNSTQTSRELSPHPMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRR |
1 |
Identification of a new begomovirus infecting Duranta repens in Pakistan. Anwar S, et al. Arch Virol. 2018 Mar;163(3):809-813. doi: 10.1007/s00705-017-3672-y. Epub 2017 Dec 9. PMID: 29224128 |
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2 |
Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan. Lal A, et al. Viruses. 2022 Sep 30;14(10):2166. doi: 10.3390/v14102166. PMID: 36298721 |
3 |
Chandrashekar K, et al. J Biosci. 2020;45:36. PMID: 32098915 |
4 |
Jailani AAK, et al. Arch Virol. 2021 Oct;166(10):2905-2909. doi: 10.1007/s00705-021-05179-8. Epub 2021 Aug 12. PMID: 34383166 |