Dicliptera yellow mottle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840105.1
Isolate USA:Florida
Release date 2015/2/12
Submitter Lotrakul,P., Valverde,R.A., Landry,A.D.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003856
TAATATTACCGGATGGCCGCGCCCCCCCCTCCCCTTTGCCGTACACTCTTGTGGTCCCCCCTCACTTTAATTTGAATTAAATGTCTGTGGACCAATCATATTGCATGTGCAGAGTCTAGATATTTGTGTTACTACTTGCTGATTAAGTTTAGTGGGCCTATAAAATTCAAATTAAAGCCCATTCATTTTAATTCAAAATGTCTAAGAGGGATGCCCCATGGCGTATGATGGTGGGCCCCTCTAAGGTTAGGCGTACTCTCAATTTCTCCCCTGGTGGAGGAATGGGCTCAAAGTCCAATAGGGCCTCTAGTTGGGTTAACAGGCCCATGTATAGGAAGCCCAGAATATATCGTATGTACAGGACTCCTGATGTGCCCAAAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAGCGTCATGATATTTCACATGTTGGTAAGGTGATGTGTGTTTCTGATGTGACACGTGGTAATGGCATTACCCACCGTGTGGGGAAACGTTTTTGTGTCAAGTCTGTGTACATTCTAGGGAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACTAATAGTGTCATGTTTTGGTTGGTTCGAGACAGGAGACCATATGGCACTCCTATGGATTTTGGCCAAGTATTCAACATGTTTGATAATGAGCCCAGTACTGCTACTGTGAAGAACGATCTACGTGATCGTTATCAAGTCATGCATAAGTTTTATGCTAAGGTGACTGGTGGACAGTATGCAAGTAATGAACAGGCTTTGGTGAAGCGTTTTTGGAAGATCAACAACCATGTAGTGTACAACCATCAAGAAGCTGGGAAATATGAGAATCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCTACTTTGAAAATTCGGATCTATTTTTATGATTCGATTATGAATTAATAAAATTTGAATTTTATTTCATGATTTTCTAATACATCTGTTACATAAGACTTGTCTGTTGCATAATGAACAGCTCCAAGTACATTGTTAATTGATACAACACCTATGTTATTTAAATATGACATTACAAGGAATTTGAATCTACTTAAATATATCATCCCAGAAGCTGTCAGAGAAGTCGTCCAGACTTGGAAGTTGAAGTAGGCTTTGTGAAGATTCAATTTCTTCCGAAGGTTGTAATTGAACCTTATCTGAAGGTGATACACCCTGCTGCGTGTGTACATTGGATCCTCTACTTGGAGTATCTTGAAATAGAGGGGATTTGGAACTTCCCAAATAAAAACGCCACTCGTTGCTTGAACTGCAGTGATGGGTTCCTCTGTGCGTGAATCCATGATTAGCACAGTTAATGTGGATGTATATTGAACAGCCACAGTTGAGGTCAACTCGTCGTCGCCTGATTGCTCTCTTCTTAGCTCTCTTGTGAATTGGTTTGATAGAGGGCGCCTGTGAGGGTGATGAAGATGGCATTATGTATTGTCCAGTTTTGTAATGCCTGATTTTCTTGTTTATTAAGGAAATCTTTATAGCTGGAGCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTTCAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCCTAGAATTGAAATCCAGATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCACATTGTCTTGCCGGTTCTTGAATCACCTTCGACGATGATACTAATAGGTCTCTCTGGCCGCGCAGCGGCACTCATGCCAAAATAATTGTCTGCCCATTCCTGCATCTCTTCTGGTACGTTAGTGAAAGAAGACAGTTGAAACGGAGGGACCCACGGTTCTGGAGCCTTCATGAATATGCGTTCCAAATTTGCCCTTAGATTATGTTGTTGTGTAACATAATCTTTTAGCTGTTCTTCTTTCAAAATTTGAAGAGCTTGTTCTGCAGATGAGGCATTTAATGCCCTGGCGTAAGAGTCATTAGCTGTCTGGCAGCCTCCTCTAGCACTTCTACCGTCAACCTGGTATTGTCCCCACTCCAGTGTGTCTCCATCCTTGCTGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGATCGAAGAATCTGTTACTTGTGCAGTTGTATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGCTGCCCATCTTCGTGTAATTCTCTGGCAATTTTAATGAATTTCTTATTTGTGGGTGTCTTCAAGTTGATGAGTTGCTGTAATGCTTCTTCTTTTGATAGTGAGCACTGAGGATATGTGAGAAAATAATTTTTGGCTTTAATGGAGAAGACACCCTTCCTTGGCATTGTTCCCCCAGAAGTGTTCCCCCAATTTCCTCTGGCTCCAAAACTCTATACAATTGGGAGAACTGGGGGAAAATATATACTAGAAGTCTAAGTAAGGAGATTGCAACACGTGGCGGCCATCCAATA

Gene Information

NCBI Accession NP_620849.1
Location 198-953
Gene Name AV1
Protein Name coat protein AV1
Coding Region ATGTCTAAGAGGGATGCCCCATGGCGTATGATGGTGGGCCCCTCTAAGGTTAGGCGTACTCTCAATTTCTCCCCTGGTGGAGGAATGGGCTCAAAGTCCAATAGGGCCTCTAGTTGGGTTAACAGGCCCATGTATAGGAAGCCCAGAATATATCGTATGTACAGGACTCCTGATGTGCCCAAAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAGCGTCATGATATTTCACATGTTGGTAAGGTGATGTGTGTTTCTGATGTGACACGTGGTAATGGCATTACCCACCGTGTGGGGAAACGTTTTTGTGTCAAGTCTGTGTACATTCTAGGGAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACTAATAGTGTCATGTTTTGGTTGGTTCGAGACAGGAGACCATATGGCACTCCTATGGATTTTGGCCAAGTATTCAACATGTTTGATAATGAGCCCAGTACTGCTACTGTGAAGAACGATCTACGTGATCGTTATCAAGTCATGCATAAGTTTTATGCTAAGGTGACTGGTGGACAGTATGCAAGTAATGAACAGGCTTTGGTGAAGCGTTTTTGGAAGATCAACAACCATGTAGTGTACAACCATCAAGAAGCTGGGAAATATGAGAATCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCTACTTTGAAAATTCGGATCTATTTTTATGATTCGATTATGAATTAA
Protein Sequence MSKRDAPWRMMVGPSKVRRTLNFSPGGGMGSKSNRASSWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKINNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession NP_620850.1
Location 950-1348
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACAGAGGAACCCATCACTGCAGTTCAAGCAACGAGTGGCGTTTTTATTTGGGAAGTTCCAAATCCCCTCTATTTCAAGATACTCCAAGTAGAGGATCCAATGTACACACGCAGCAGGGTGTATCACCTTCAGATAAGGTTCAATTACAACCTTCGGAAGAAATTGAATCTTCACAAAGCCTACTTCAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGATGATATATTTAAGTAGATTCAAATTCCTTGTAATGTCATATTTAAATAACATAGGTGTTGTATCAATTAACAATGTACTTGGAGCTGTTCATTATGCAACAGACAAGTCTTATGTAACAGATGTATTAGAAAATCATGAAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTEEPITAVQATSGVFIWEVPNPLYFKILQVEDPMYTRSRVYHLQIRFNYNLRKKLNLHKAYFNFQVWTTSLTASGMIYLSRFKFLVMSYLNNIGVVSINNVLGAVHYATDKSYVTDVLENHEIKFKFY

NCBI Accession NP_620851.1
Location 1095-1613
Gene Name AC2
Protein Name AC2
Coding Region ATGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGCTCCAGCTATAAAGATTTCCTTAATAAACAAGAAAATCAGGCATTACAAAACTGGACAATACATAATGCCATCTTCATCACCCTCACAGGCGCCCTCTATCAAACCAATTCACAAGAGAGCTAAGAAGAGAGCAATCAGGCGACGACGAGTTGACCTCAACTGTGGCTGTTCAATATACATCCACATTAACTGTGCTAATCATGGATTCACGCACAGAGGAACCCATCACTGCAGTTCAAGCAACGAGTGGCGTTTTTATTTGGGAAGTTCCAAATCCCCTCTATTTCAAGATACTCCAAGTAGAGGATCCAATGTACACACGCAGCAGGGTGTATCACCTTCAGATAAGGTTCAATTACAACCTTCGGAAGAAATTGAATCTTCACAAAGCCTACTTCAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGATGATATATTTAAGTAG
Protein Sequence MESQFKLKGAFHQSCYAILVRAPAIKISLINKKIRHYKTGQYIMPSSSPSQAPSIKPIHKRAKKRAIRRRRVDLNCGCSIYIHINCANHGFTHRGTHHCSSSNEWRFYLGSSKSPLFQDTPSRGSNVHTQQGVSPSDKVQLQPSEEIESSQSLLQLPSLDDFSDSFWDDIFK

NCBI Accession NP_620852.1
Location 1426-2481
Gene Name AC1
Protein Name replication initiation protein AC1
Coding Region ATGCCAAGGAAGGGTGTCTTCTCCATTAAAGCCAAAAATTATTTTCTCACATATCCTCAGTGCTCACTATCAAAAGAAGAAGCATTACAGCAACTCATCAACTTGAAGACACCCACAAATAAGAAATTCATTAAAATTGCCAGAGAATTACACGAAGATGGGCAGCCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATACAACTGCACAAGTAACAGATTCTTCGATCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCAGCAAGGATGGAGACACACTGGAGTGGGGACAATACCAGGTTGACGGTAGAAGTGCTAGAGGAGGCTGCCAGACAGCTAATGACTCTTACGCCAGGGCATTAAATGCCTCATCTGCAGAACAAGCTCTTCAAATTTTGAAAGAAGAACAGCTAAAAGATTATGTTACACAACAACATAATCTAAGGGCAAATTTGGAACGCATATTCATGAAGGCTCCAGAACCGTGGGTCCCTCCGTTTCAACTGTCTTCTTTCACTAACGTACCAGAAGAGATGCAGGAATGGGCAGACAATTATTTTGGCATGAGTGCCGCTGCGCGGCCAGAGAGACCTATTAGTATCATCGTCGAAGGTGATTCAAGAACCGGCAAGACAATGTGGGCAAGATCATTAGGAAAGCATAATTATCTGTCAGGTCATCTGGATTTCAATTCTAGGGTCTATTCGAATGACGTAGAATATAACGTCATTGATGATGTCAGCCCTAGCTATTTGAAATTAAAGCATTGGAAAGAATTAATTGGGGCCCAGAAAGACTGGCAGTCAAACTGTAAGTATGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGCTCCAGCTATAAAGATTTCCTTAATAAACAAGAAAATCAGGCATTACAAAACTGGACAATACATAATGCCATCTTCATCACCCTCACAGGCGCCCTCTATCAAACCAATTCACAAGAGAGCTAA
Protein Sequence MPRKGVFSIKAKNYFLTYPQCSLSKEEALQQLINLKTPTNKKFIKIARELHEDGQPHLHVLIQFEGKYNCTSNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVSKDGDTLEWGQYQVDGRSARGGCQTANDSYARALNASSAEQALQILKEEQLKDYVTQQHNLRANLERIFMKAPEPWVPPFQLSSFTNVPEEMQEWADNYFGMSAAARPERPISIIVEGDSRTGKTMWARSLGKHNYLSGHLDFNSRVYSNDVEYNVIDDVSPSYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLNKQENQALQNWTIHNAIFITLTGALYQTNSQES

References More References in PubMed

1

Biological and Molecular Properties of a Begomovirus from Dicliptera sexangularis.

Lotrakul P, et al.  Phytopathology. 2000 Jul;90(7):723-9. doi: 10.1094/PHYTO.2000.90.7.723.

PMID: 18944491
2

First Report and Partial Molecular Characterization of a New Begomovirus Associated with Pigeon Pea in Puerto Rico.

Rodriguez RL, et al.  Plant Dis. 2001 Oct;85(10):1119. doi: 10.1094/PDIS.2001.85.10.1119C.

PMID: 30823289