Datura leaf curl virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_004788495.1 |
| Isolate | Sudan |
| Release date | 2019/6/28 |
| Submitter | Mohammed,H.S., El Siddig,M.A., El Hussein,A.A., Navas-Castillo,J., Fiallo-Olive,E., Mohammed,H. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_043531
Gene Information
| NCBI Accession | YP_009666811.1 |
|---|---|
| Location | 147-497 |
| Gene Name | AV2 |
| Protein Name | AV2 protein |
| Coding Region | ATGTGGGACCCACTACTAAATGAATTTCCTGAATCCGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTTAGGGCCCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
| Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQAPIMDVQAHVPKAQNIQNVSKP |
| NCBI Accession | YP_009666812.1 |
|---|---|
| Location | 307-1083 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTGCAGTCTTATGAGCAACGGGATGATATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCCGGAATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTCATTGGTGGGCCCTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTTTTTAGAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGAATCTATTTTTATGATTCGGTCAGCAATTAA |
| Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNRRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSVSN |
| NCBI Accession | YP_009666813.1 |
|---|---|
| Location | 1080-1484 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGCTGAATGGCGTCTTTATCTGGGAGGTAACAAATCCCCTCTATTTCAAGATCATCCAGCACGACAACAAATCATTCGGAATGACGATGGACATAATAACCATCCAGATACGATTCAACCACAAGCTGAGGAAAGCGTTGGGACTACACCAATGCTGGATGGATTTCCAGGTCTGGACGACCTTACACCCTCAGACCTGGCATTTCTTGAGGGTATTTAAAACCCAAGTATTAAAATACCTCGATAGTTTAGGGATTATAAGTATTAATACAGTTGTAAAAGCCGTAGAGCATGTATTGTACAATGTACTCGATGGGACTGACAGTGTTGAGCAGTCTAATTTAATAAAATTTAATGTTTATTAA |
| Protein Sequence | MDSRTGELITAAQALNGVFIWEVTNPLYFKIIQHDNKSFGMTMDIITIQIRFNHKLRKALGLHQCWMDFQVWTTLHPQTWHFLRVFKTQVLKYLDSLGIISINTVVKAVEHVLYNVLDGTDSVEQSNLIKFNVY |
| NCBI Accession | YP_009666814.1 |
|---|---|
| Location | 1225-1632 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCAACCTTCATCTCCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAATTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGCTGAATGGCGTCTTTATCTGGGAGGTAACAAATCCCCTCTATTTCAAGATCATCCAGCACGACAACAAATCATTCGGAATGACGATGGACATAATAACCATCCAGATACGATTCAACCACAAGCTGAGGAAAGCGTTGGGACTACACCAATGCTGGATGGATTTCCAGGTCTGGACGACCTTACACCCTCAGACCTGGCATTTCTTGAGGGTATTTAA |
| Protein Sequence | MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSSAEWRLYLGGNKSPLFQDHPARQQIIRNDDGHNNHPDTIQPQAEESVGTTPMLDGFPGLDDLTPSDLAFLEGI |
| NCBI Accession | YP_009666815.1 |
|---|---|
| Location | 1562-2674 |
| Gene Name | AC1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGGGCACCCAAAGCCCCCAATTCCCACAGAGTTTCGAGAGCACCCAATTCAATATGCCACGTGTTAATTCCTTCCAAGTTAAAGCAAAAAACATATTCCTTACATATCCAAAATGCCCAATCCCAAAAGAGCAAATGCTCGAACTCATCAAATCCATACACTGTCCATCAGATAAATTATTTATCCGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCTCTCATCCAGTTCAAGGGTAAGGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATAACTCCTCCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCATACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAATTTCAGGTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTGAATTCAGGTTCCGCTGATGTTGCTCTGGCAATAATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTTTGCACCTCCAAAGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCCTTTGATCAAGTTCCAGAGGCCATAGAGGAATGGGTGTCTGAGAATGTCATGGATGCCGCTGCGCGGCCATGGAGACCTAATAGTATTGTCATCGAGGGTGATAGCAGAACCGGCAAAACAATGTGGGCCAGGTCTCTAGGCCCACATAATTATTTGTGTGGACATCTAGACCTAAGTCCAAAGGTGTACAGTAATGATGCGTGGTACAATGTAATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCAACTATCTTCCTCTGCAATCCAGGGCCCAATTCCAGCTATAAAGAGTTCCTGGACGAAGAAAAGAATTGCGCATTAAAAGCCTGGGCACTAAAAAATGCAACCTTCATCTCCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA |
| Protein Sequence | MGTQSPQFPQSFESTQFNMPRVNSFQVKAKNIFLTYPKCPIPKEQMLELIKSIHCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPHNSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNSGSADVALAIIREKLPKDFIFQYHNLKNNLDRIFAPPKEVYVSPFLSSSFDQVPEAIEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEFLDEEKNCALKAWALKNATFISLEEPLYSGTNQGPTQSC |
| NCBI Accession | YP_009666816.1 |
|---|---|
| Location | 2206-2463 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGTCTCTGCATATCCATGCTCTCATCCAGTTCAAGGGTAAGGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATAACTCCTCCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCATACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAATTTCAGGTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTGA |
| Protein Sequence | MGLCISMLSSSSRVRPSSETPDISMSLTLITPPNSTQISRELSPHPMSSHTSRRTVITSTGVNFRSMEDLLEEVNRQLMMLQQRP |
References More References in PubMed
| 1 |
Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703 |
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| 2 |
Chen LF, et al. Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x. PMID: 19400843 |
| 3 |
Prasanth G, et al. Plant Dis. 2008 Feb;92(2):311. doi: 10.1094/PDIS-92-2-0311B. PMID: 30769415 |
| 4 |
Three years survey of Tomato yellow leaf curl Sardinia virus reservoir weed hosts in southern Italy. Fanigliulo A, et al. Commun Agric Appl Biol Sci. 2007;72(4):1023-8. PMID: 18396845 |
| 5 |
Natural Hosts and Genetic Diversity of the Emerging Tomato Leaf Curl New Delhi Virus in Spain. Juárez M, et al. Front Microbiol. 2019 Feb 20;10:140. doi: 10.3389/fmicb.2019.00140. eCollection 2019. PMID: 30842757 |
| 6 |
Biolistic inoculation of plants with tomato yellow leaf curl virus DNA. Lapidot M, et al. J Virol Methods. 2007 Sep;144(1-2):143-8. doi: 10.1016/j.jviromet.2007.04.011. Epub 2007 Jun 15. PMID: 17573131 |
| 7 |
Characterization and transient replication of tomato leaf curl virus defective DNAs. Behjatnia SA, et al. Arch Virol. 2007;152(6):1127-38. doi: 10.1007/s00705-006-0929-2. Epub 2007 Mar 9. PMID: 17347773 |
| 8 |
Current Status and New Natural Hosts of Tomato yellow leaf curl virus (TYLCV) in Spain. Jordá C, et al. Plant Dis. 2001 Apr;85(4):445. doi: 10.1094/PDIS.2001.85.4.445C. PMID: 30831991 |
| 9 |
Kharazmi S, et al. Arch Virol. 2012 Jul;157(7):1269-79. doi: 10.1007/s00705-012-1290-2. Epub 2012 Apr 5. PMID: 22476203 |
| 10 |
First Report of Tomato Yellow Leaf Curl Geminivirus in Morocco. Peterschmitt M, et al. Plant Dis. 1999 Nov;83(11):1074. doi: 10.1094/PDIS.1999.83.11.1074C. PMID: 30841294 |