Datura leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004788495.1
Isolate Sudan
Release date 2019/6/28
Submitter Mohammed,H.S., El Siddig,M.A., El Hussein,A.A., Navas-Castillo,J., Fiallo-Olive,E., Mohammed,H.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_043531
ACCGGATGGCCGCGCCCCGCTTTTTGTGGTGGTCCCATGTGGGTCCCACACACTTTGCTATCAACCAATGAAATTGCAGCCTCAAACGTTAGATAATTGTTCATTTGTCTTTATATACTTGGTCCCCAAGTATTTTGTCTTGCAATATGTGGGACCCACTACTAAATGAATTTCCTGAATCCGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTTAGGGCCCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTGCAGTCTTATGAGCAACGGGATGATATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCCGGAATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTCATTGGTGGGCCCTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTTTTTAGAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGAATCTATTTTTATGATTCGGTCAGCAATTAATAAACATTAAATTTTATTAAATTAGACTGCTCAACACTGTCAGTCCCATCGAGTACATTGTACAATACATGCTCTACGGCTTTTACAACTGTATTAATACTTATAATCCCTAAACTATCGAGGTATTTTAATACTTGGGTTTTAAATACCCTCAAGAAATGCCAGGTCTGAGGGTGTAAGGTCGTCCAGACCTGGAAATCCATCCAGCATTGGTGTAGTCCCAACGCTTTCCTCAGCTTGTGGTTGAATCGTATCTGGATGGTTATTATGTCCATCGTCATTCCGAATGATTTGTTGTCGTGCTGGATGATCTTGAAATAGAGGGGATTTGTTACCTCCCAGATAAAGACGCCATTCAGCGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAATTTAGATCAACCCTCTTACGCCGGATGGCTCTACGCTTAGCAGCTCTGTGTTGGACCTTGATTGGTACCTGAGTATAGTGGCTCTTCGAGGGAGATGAAGGTTGCATTTTTTAGTGCCCAGGCTTTTAATGCGCAATTCTTTTCTTCGTCCAGGAACTCTTTATAGCTGGAATTGGGCCCTGGATTGCAGAGGAAGATAGTTGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATTACATTGTACCACGCATCATTACTGTACACCTTTGGACTTAGGTCTAGATGTCCACACAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCGGTTCTGCTATCACCCTCGATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGGCATCCATGACATTCTCAGACACCCATTCCTCTATGGCCTCTGGAACTTGATCAAAGGAAGAAGAAAGAAAAGGGGAAACATAAACCTCCTTTGGAGGTGCAAAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCCAGAGCAACATCAGCGGAACCTGAATTCAGGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGACCTGAAATTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTATGACTTGACATCGGATGAGGACTTAGCTCCCTGGAAATTTGGGTGGAATTGGGAGGAGTTATGAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGGCCTTACCCTTGAACTGGATGAGAGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCGGATAAATAATTTATCTGATGGACAGTGTATGGATTTGATGAGTTCGAGCATTTGCTCTTTTGGGATTGGGCATTTTGGATATGTAAGGAATATGTTTTTTGCTTTAACTTGGAAGGAATTAACACGTGGCATATTGAATTGGGTGCTCTCGAAACTCTGTGGGAATTGGGGGCTTTGGGTGCCCATTTATATGGAGCACCCAAATGGCAAATTGGTAATTTTAGAACTTTAATTTGAAATTTGAAATTCAAAATTCAAATTTTAAATCCCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009666811.1
Location 147-497
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGACCCACTACTAAATGAATTTCCTGAATCCGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTTAGGGCCCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQAPIMDVQAHVPKAQNIQNVSKP

NCBI Accession YP_009666812.1
Location 307-1083
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTGCAGTCTTATGAGCAACGGGATGATATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCCGGAATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTCATTGGTGGGCCCTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTTTTTAGAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGAATCTATTTTTATGATTCGGTCAGCAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNRRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSVSN

NCBI Accession YP_009666813.1
Location 1080-1484
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGCTGAATGGCGTCTTTATCTGGGAGGTAACAAATCCCCTCTATTTCAAGATCATCCAGCACGACAACAAATCATTCGGAATGACGATGGACATAATAACCATCCAGATACGATTCAACCACAAGCTGAGGAAAGCGTTGGGACTACACCAATGCTGGATGGATTTCCAGGTCTGGACGACCTTACACCCTCAGACCTGGCATTTCTTGAGGGTATTTAAAACCCAAGTATTAAAATACCTCGATAGTTTAGGGATTATAAGTATTAATACAGTTGTAAAAGCCGTAGAGCATGTATTGTACAATGTACTCGATGGGACTGACAGTGTTGAGCAGTCTAATTTAATAAAATTTAATGTTTATTAA
Protein Sequence MDSRTGELITAAQALNGVFIWEVTNPLYFKIIQHDNKSFGMTMDIITIQIRFNHKLRKALGLHQCWMDFQVWTTLHPQTWHFLRVFKTQVLKYLDSLGIISINTVVKAVEHVLYNVLDGTDSVEQSNLIKFNVY

NCBI Accession YP_009666814.1
Location 1225-1632
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAACCTTCATCTCCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAATTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGCTGAATGGCGTCTTTATCTGGGAGGTAACAAATCCCCTCTATTTCAAGATCATCCAGCACGACAACAAATCATTCGGAATGACGATGGACATAATAACCATCCAGATACGATTCAACCACAAGCTGAGGAAAGCGTTGGGACTACACCAATGCTGGATGGATTTCCAGGTCTGGACGACCTTACACCCTCAGACCTGGCATTTCTTGAGGGTATTTAA
Protein Sequence MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSSAEWRLYLGGNKSPLFQDHPARQQIIRNDDGHNNHPDTIQPQAEESVGTTPMLDGFPGLDDLTPSDLAFLEGI

NCBI Accession YP_009666815.1
Location 1562-2674
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGGGCACCCAAAGCCCCCAATTCCCACAGAGTTTCGAGAGCACCCAATTCAATATGCCACGTGTTAATTCCTTCCAAGTTAAAGCAAAAAACATATTCCTTACATATCCAAAATGCCCAATCCCAAAAGAGCAAATGCTCGAACTCATCAAATCCATACACTGTCCATCAGATAAATTATTTATCCGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCTCTCATCCAGTTCAAGGGTAAGGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATAACTCCTCCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCATACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAATTTCAGGTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTGAATTCAGGTTCCGCTGATGTTGCTCTGGCAATAATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTTTGCACCTCCAAAGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCCTTTGATCAAGTTCCAGAGGCCATAGAGGAATGGGTGTCTGAGAATGTCATGGATGCCGCTGCGCGGCCATGGAGACCTAATAGTATTGTCATCGAGGGTGATAGCAGAACCGGCAAAACAATGTGGGCCAGGTCTCTAGGCCCACATAATTATTTGTGTGGACATCTAGACCTAAGTCCAAAGGTGTACAGTAATGATGCGTGGTACAATGTAATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCAACTATCTTCCTCTGCAATCCAGGGCCCAATTCCAGCTATAAAGAGTTCCTGGACGAAGAAAAGAATTGCGCATTAAAAGCCTGGGCACTAAAAAATGCAACCTTCATCTCCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA
Protein Sequence MGTQSPQFPQSFESTQFNMPRVNSFQVKAKNIFLTYPKCPIPKEQMLELIKSIHCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPHNSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNSGSADVALAIIREKLPKDFIFQYHNLKNNLDRIFAPPKEVYVSPFLSSSFDQVPEAIEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEFLDEEKNCALKAWALKNATFISLEEPLYSGTNQGPTQSC

NCBI Accession YP_009666816.1
Location 2206-2463
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCATGCTCTCATCCAGTTCAAGGGTAAGGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATAACTCCTCCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCATACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAATTTCAGGTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTGA
Protein Sequence MGLCISMLSSSSRVRPSSETPDISMSLTLITPPNSTQISRELSPHPMSSHTSRRTVITSTGVNFRSMEDLLEEVNRQLMMLQQRP

References More References in PubMed

1

Complete genome sequence of datura leaf curl virus, a novel begomovirus infecting Datura innoxia in Sudan, related to begomoviruses causing tomato yellow leaf curl disease.

Mohammed HS, et al.  Arch Virol. 2018 Jan;163(1):273-275. doi: 10.1007/s00705-017-3574-z. Epub 2017 Oct 4.

PMID: 28980080
2

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
3

A Novel Strain of the Begomovirus Tomato Leaf Curl Sudan Virus Infecting Datura stramonium in Sudan.

Mohammed HS, et al.  Plant Dis. 2018 Sep;102(9):1863. doi: 10.1094/PDIS-01-18-0195-PDN. Epub 2018 Jul 6.

PMID: 30125192
4

Occurrence of Sweet potato feathery mottle virus and Sweet potato leaf curl Georgia virus on Sweet Potato in India.

Prasanth G, et al.  Plant Dis. 2008 Feb;92(2):311. doi: 10.1094/PDIS-92-2-0311B.

PMID: 30769415
5

A severe symptom phenotype in tomato in Mali is caused by a reassortant between a novel recombinant begomovirus (Tomato yellow leaf curl Mali virus) and a betasatellite.

Chen LF, et al.  Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x.

PMID: 19400843
6

Molecular characterization of viruses associated to leaf curl disease complex on zucchini squash in Iraq reveals Deng primer set could distinguish between New and Old World Begomoviruses.

Mohammed D, et al.  An Acad Bras Cienc. 2021 Oct 29;93(suppl 3):e20210050. doi: 10.1590/0001-3765202120210050. eCollection 2021.

PMID: 34730743
7

Natural Hosts and Genetic Diversity of the Emerging Tomato Leaf Curl New Delhi Virus in Spain.

Juárez M, et al.  Front Microbiol. 2019 Feb 20;10:140. doi: 10.3389/fmicb.2019.00140. eCollection 2019.

PMID: 30842757
8

Two genetically related begomoviruses causing tomato leaf curl disease in Togo and Nigeria differ in virulence and host range but do not require a betasatellite for induction of disease symptoms.

Kon T, et al.  Arch Virol. 2012 Jan;157(1):107-20. doi: 10.1007/s00705-011-1139-0. Epub 2011 Nov 5.

PMID: 22057578
9

Biolistic inoculation of plants with tomato yellow leaf curl virus DNA.

Lapidot M, et al.  J Virol Methods. 2007 Sep;144(1-2):143-8. doi: 10.1016/j.jviromet.2007.04.011. Epub 2007 Jun 15.

PMID: 17573131
10

Cotton leaf curl Multan betasatellite as a plant gene delivery vector trans-activated by taxonomically diverse geminiviruses.

Kharazmi S, et al.  Arch Virol. 2012 Jul;157(7):1269-79. doi: 10.1007/s00705-012-1290-2. Epub 2012 Apr 5.

PMID: 22476203