Genus | Begomovirus |
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NCBI Assembly | GCF_004788495.1 |
Isolate | Sudan |
Release date | 2019/6/28 |
Submitter | Mohammed,H.S., El Siddig,M.A., El Hussein,A.A., Navas-Castillo,J., Fiallo-Olive,E., Mohammed,H. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009666811.1 |
---|---|
Location | 147-497 |
Gene Name | AV2 |
Protein Name | AV2 protein |
Coding Region | ATGTGGGACCCACTACTAAATGAATTTCCTGAATCCGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTTAGGGCCCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQAPIMDVQAHVPKAQNIQNVSKP |
NCBI Accession | YP_009666812.1 |
---|---|
Location | 307-1083 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCACAAACAGGCGCCGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTGCAGTCTTATGAGCAACGGGATGATATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCCGGAATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTCATTGGTGGGCCCTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTTTTTAGAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGAATCTATTTTTATGATTCGGTCAGCAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNRRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSVSN |
NCBI Accession | YP_009666813.1 |
---|---|
Location | 1080-1484 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGCTGAATGGCGTCTTTATCTGGGAGGTAACAAATCCCCTCTATTTCAAGATCATCCAGCACGACAACAAATCATTCGGAATGACGATGGACATAATAACCATCCAGATACGATTCAACCACAAGCTGAGGAAAGCGTTGGGACTACACCAATGCTGGATGGATTTCCAGGTCTGGACGACCTTACACCCTCAGACCTGGCATTTCTTGAGGGTATTTAAAACCCAAGTATTAAAATACCTCGATAGTTTAGGGATTATAAGTATTAATACAGTTGTAAAAGCCGTAGAGCATGTATTGTACAATGTACTCGATGGGACTGACAGTGTTGAGCAGTCTAATTTAATAAAATTTAATGTTTATTAA |
Protein Sequence | MDSRTGELITAAQALNGVFIWEVTNPLYFKIIQHDNKSFGMTMDIITIQIRFNHKLRKALGLHQCWMDFQVWTTLHPQTWHFLRVFKTQVLKYLDSLGIISINTVVKAVEHVLYNVLDGTDSVEQSNLIKFNVY |
NCBI Accession | YP_009666814.1 |
---|---|
Location | 1225-1632 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCAACCTTCATCTCCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAATTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGCTGAATGGCGTCTTTATCTGGGAGGTAACAAATCCCCTCTATTTCAAGATCATCCAGCACGACAACAAATCATTCGGAATGACGATGGACATAATAACCATCCAGATACGATTCAACCACAAGCTGAGGAAAGCGTTGGGACTACACCAATGCTGGATGGATTTCCAGGTCTGGACGACCTTACACCCTCAGACCTGGCATTTCTTGAGGGTATTTAA |
Protein Sequence | MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSSAEWRLYLGGNKSPLFQDHPARQQIIRNDDGHNNHPDTIQPQAEESVGTTPMLDGFPGLDDLTPSDLAFLEGI |
NCBI Accession | YP_009666815.1 |
---|---|
Location | 1562-2674 |
Gene Name | AC1 |
Protein Name | replication-associated protein |
Coding Region | ATGGGCACCCAAAGCCCCCAATTCCCACAGAGTTTCGAGAGCACCCAATTCAATATGCCACGTGTTAATTCCTTCCAAGTTAAAGCAAAAAACATATTCCTTACATATCCAAAATGCCCAATCCCAAAAGAGCAAATGCTCGAACTCATCAAATCCATACACTGTCCATCAGATAAATTATTTATCCGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCTCTCATCCAGTTCAAGGGTAAGGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATAACTCCTCCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCATACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAATTTCAGGTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTGAATTCAGGTTCCGCTGATGTTGCTCTGGCAATAATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTTTGCACCTCCAAAGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCCTTTGATCAAGTTCCAGAGGCCATAGAGGAATGGGTGTCTGAGAATGTCATGGATGCCGCTGCGCGGCCATGGAGACCTAATAGTATTGTCATCGAGGGTGATAGCAGAACCGGCAAAACAATGTGGGCCAGGTCTCTAGGCCCACATAATTATTTGTGTGGACATCTAGACCTAAGTCCAAAGGTGTACAGTAATGATGCGTGGTACAATGTAATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCAACTATCTTCCTCTGCAATCCAGGGCCCAATTCCAGCTATAAAGAGTTCCTGGACGAAGAAAAGAATTGCGCATTAAAAGCCTGGGCACTAAAAAATGCAACCTTCATCTCCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA |
Protein Sequence | MGTQSPQFPQSFESTQFNMPRVNSFQVKAKNIFLTYPKCPIPKEQMLELIKSIHCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPHNSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNSGSADVALAIIREKLPKDFIFQYHNLKNNLDRIFAPPKEVYVSPFLSSSFDQVPEAIEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEFLDEEKNCALKAWALKNATFISLEEPLYSGTNQGPTQSC |
NCBI Accession | YP_009666816.1 |
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Location | 2206-2463 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGTCTCTGCATATCCATGCTCTCATCCAGTTCAAGGGTAAGGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATAACTCCTCCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCATACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAATTTCAGGTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTGA |
Protein Sequence | MGLCISMLSSSSRVRPSSETPDISMSLTLITPPNSTQISRELSPHPMSSHTSRRTVITSTGVNFRSMEDLLEEVNRQLMMLQQRP |
1 |
Mohammed HS, et al. Arch Virol. 2018 Jan;163(1):273-275. doi: 10.1007/s00705-017-3574-z. Epub 2017 Oct 4. PMID: 28980080 |
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2 |
Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703 |
3 |
A Novel Strain of the Begomovirus Tomato Leaf Curl Sudan Virus Infecting Datura stramonium in Sudan. Mohammed HS, et al. Plant Dis. 2018 Sep;102(9):1863. doi: 10.1094/PDIS-01-18-0195-PDN. Epub 2018 Jul 6. PMID: 30125192 |
4 |
Prasanth G, et al. Plant Dis. 2008 Feb;92(2):311. doi: 10.1094/PDIS-92-2-0311B. PMID: 30769415 |
5 |
Chen LF, et al. Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x. PMID: 19400843 |
6 |
Mohammed D, et al. An Acad Bras Cienc. 2021 Oct 29;93(suppl 3):e20210050. doi: 10.1590/0001-3765202120210050. eCollection 2021. PMID: 34730743 |
7 |
Natural Hosts and Genetic Diversity of the Emerging Tomato Leaf Curl New Delhi Virus in Spain. Juárez M, et al. Front Microbiol. 2019 Feb 20;10:140. doi: 10.3389/fmicb.2019.00140. eCollection 2019. PMID: 30842757 |
8 |
Kon T, et al. Arch Virol. 2012 Jan;157(1):107-20. doi: 10.1007/s00705-011-1139-0. Epub 2011 Nov 5. PMID: 22057578 |
9 |
Biolistic inoculation of plants with tomato yellow leaf curl virus DNA. Lapidot M, et al. J Virol Methods. 2007 Sep;144(1-2):143-8. doi: 10.1016/j.jviromet.2007.04.011. Epub 2007 Jun 15. PMID: 17573131 |
10 |
Kharazmi S, et al. Arch Virol. 2012 Jul;157(7):1269-79. doi: 10.1007/s00705-012-1290-2. Epub 2012 Apr 5. PMID: 22476203 |