Cucumber chlorotic leaf virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_018587415.1 |
| Isolate | Mexico |
| Release date | 2021/6/1 |
| Submitter | Cardenas-Conejo,Y. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_055582
Gene Information
| NCBI Accession | YP_010087782.1 |
|---|---|
| Location | 217-972 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAA |
| Protein Sequence | MPKRDAPWRTMAGTSKVTRSVNYSPRGGIGPKFDKASAWVNRPMYRKPRIYRALRGPDVPKGCEGPCKVQPFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFFLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKMDLRDRFQVMRRFYAKVTGGQYASNEQALVRRFWRVNIRFVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
| NCBI Accession | YP_010087783.1 |
|---|---|
| Location | 969-1367 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAGATTTAGTCGCTTAGTCATGTTGTACTTAGACAATATAGGCGTTATTTCAATTAATAATGTTATTCGAGCTGTTCGCTTCGCGACAGACAGATCATATGTAAATGATGTACTTGAAAATCATGAAATAAAATTCTTATTTTATTAA |
| Protein Sequence | MDSRTGEPITAHQAESGVFIWEVPNPLYFKINQVEVPPFSLITIYHVQIRFNHKLRRALGLHKAFLNFQVWTTLLRVSGTTYLNRFSRLVMLYLDNIGVISINNVIRAVRFATDRSYVNDVLENHEIKFLFY |
| NCBI Accession | YP_010087784.1 |
|---|---|
| Location | 1114-1503 |
| Gene Name | AC2 |
| Protein Name | transactivator protein |
| Coding Region | ATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAGACGAGCGAAGAGGAGAGCTGTTCGTCGTAGAAGGTTGGACCTGAACTGCGGCTGTTCCATATTCCTGCACATCAATTGCGTCAATCATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAG |
| Protein Sequence | MRNSSPSTPPSIKAQHRRAKRRAVRRRRLDLNCGCSIFLHINCVNHGFTHRGTHHCASSREWRFYLGGSKSPLFQDKPGGGSTVLPDHDIPCPDKVQPQTEEGTGSTQSLPEFPSLDDIASSFWDDVFK |
| NCBI Accession | YP_010087785.1 |
|---|---|
| Location | 1454-2494 |
| Gene Name | AC1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCACGGAACCCCAGTTCATTTCGTTTAACTGCCAAAAACACTTTCTTAACATATCCTCAGTGCGACATATCCAAAGATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAGTTAGTTATCATCATGTCAAGGCTAACATCGAACGCCTCTTTCATAAGGCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCACATTCACTAACGTCCCCGTGGAGATGCAAAGGTGGGCTGATGTCTATTTCGGGAGAGATGCCGCTGCGCGGCCAGAGAGACCTATTAGCATCATCATTGAGGGTGATTCAAGGACGGGAAAAACGATGTGGGCTCGTGCTTTAGGTGTTCATAATTACTTGTCTGGTCACCTGGACTTTAATCCTCGGGTCTATTCAAACGATGTGGAGTATAACGTCATTGATGACGTTAGTCCACATTATCTCAAGCTAAAGCACTGGAAAGAGCTAATAGGGTCCCAAAGAGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCATCCATTGTGCTTTGTAACCCGGGAGAGGGGGCTTCATATAAAGACTTCCTAGACAAAGAAGAAAACGCATCACTAAAAGCGTGGACGCTTCATAATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAG |
| Protein Sequence | MPRNPSSFRLTAKNTFLTYPQCDISKDEALQMLQHLHWSVVKPTYIRVAREEHSDGLPHLHRLVQLSDKSNIKDARFFDLTHPRRSACFHPNIQAAKDANAVKNYITKEGDYCESGQYKVSGSSKANKDDVYRNAVNAGSAGEALDIIKVGDPRTFIVSYHHVKANIERLFHKAPEPWTPPFQLSTFTNVPVEMQRWADVYFGRDAAARPERPISIIIEGDSRTGKTMWARALGVHNYLSGHLDFNPRVYSNDVEYNVIDDVSPHYLKLKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFVTINAPLYQSTT |
| NCBI Accession | YP_010087786.1 |
|---|---|
| Location | 2023-2415 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAG |
| Protein Sequence | MKLFRCFSIFTGQSSNQRISESHERNIPTDSHTYTVSSNYQTNLTSRMLDFSTLLTQEGLPVFTQTYRQPKTPMPSRTTSPKRVIIVNPDSTKCLGVQRPTKTTSTATPSMQEVRERLSTLSRSVIQGRS |
References More References in PubMed
| 1 |
García-Rodríguez DA, et al. PeerJ. 2023 Mar 22;11:e15047. doi: 10.7717/peerj.15047. eCollection 2023. PMID: 36974135 |
|---|---|
| 2 |
First Report of Cucumber leaf spot virus in Poland. Pospieszny H, et al. Plant Dis. 2004 Dec;88(12):1381. doi: 10.1094/PDIS.2004.88.12.1381B. PMID: 30795202 |
| 3 |
Chen S, et al. Viruses. 2019 Sep 4;11(9):818. doi: 10.3390/v11090818. PMID: 31487883 |
| 4 |
Cucumber Ribosomal Protein CsRPS21 Interacts With P22 Protein of Cucurbit Chlorotic Yellows Virus. Yang X, et al. Front Microbiol. 2021 Apr 29;12:654697. doi: 10.3389/fmicb.2021.654697. eCollection 2021. PMID: 33995313 |
| 5 |
First Report of Cucumber leaf spot virus in Spain. Segundo E, et al. Plant Dis. 2001 Oct;85(10):1123. doi: 10.1094/PDIS.2001.85.10.1123A. PMID: 30823301 |
| 6 |
Maliano MR, et al. Plant Dis. 2021 Oct;105(10):3162-3170. doi: 10.1094/PDIS-08-20-1759-RE. Epub 2021 Nov 7. PMID: 33591835 |
| 7 |
First Report of Cucurbit chlorotic yellows virus on Cucumber in Lebanon. Abrahamian PE, et al. Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0486-PDN. PMID: 30727468 |
| 8 |
First Report of Cucurbit chlorotic yellows virus Infecting Cucumber, Melon, and Squash in Iran. Bananej K, et al. Plant Dis. 2013 Jul;97(7):1005. doi: 10.1094/PDIS-01-13-0125-PDN. PMID: 30722569 |
| 9 |
Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology. Dong ZX, et al. Plant Methods. 2022 Dec 22;18(1):143. doi: 10.1186/s13007-022-00976-x. PMID: 36550551 |
| 10 |
Resistance Against Melon Chlorotic Mosaic Virus and Tomato Leaf Curl New Delhi Virus in Melon. Romay G, et al. Plant Dis. 2019 Nov;103(11):2913-2919. doi: 10.1094/PDIS-02-19-0298-RE. Epub 2019 Aug 20. PMID: 31436474 |