Cucumber chlorotic leaf virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTGGTGTCCTCCTACGTGGCGCAATCCCCCCGTTCCAAATCCCCCGCTCTCTCTCCACAAATTTCGGCCATGTGACTTAAAAATGACAAATAAAGGTGACCAATCATGTCTCGTCCTACGAGACTAGATATTTATTACTTTGCGACCAAGTTGTCGTATAAATGTACGTGCATTGTCATTTTTTCCTTTAATTCAAAATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAATAAAATAAGAATTTTATTTCATGATTTTCAAGTACATCATTTACATATGATCTGTCTGTCGCGAAGCGAACAGCTCGAATAACATTATTAATTGAAATAACGCCTATATTGTCTAAGTACAACATGACTAAGCGACTAAATCTATTTAAATACGTCGTCCCAGAAACTCGAAGCAATGTCGTCCAGACTTGGAAATTCAGGAAGGCTTTGTGTAGACCCAGTGCCCTCCTCAGTTTGTGGTTGAACCTTATCTGGACATGGTATATCGTGATCAGGGAGAACGGTGGAACCTCCACCTGGTTTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCTCTGCTTGATGCGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATTGACGCAATTGATGTGCAGGAATATGGAACAGCCGCAGTTCAGGTCCAACCTTCTACGACGAACAGCTCTCCTCTTCGCTCGTCTATGTTGTGCTTTGATAGAGGGGGGCGTTGATGGTGACGAATTTCGCATTATGAAGCGTCCACGCTTTTAGTGATGCGTTTTCTTCTTTGTCTAGGAAGTCTTTATATGAAGCCCCCTCTCCCGGGTTACAAAGCACAATGGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCTCTTTGGGACCCTATTAGCTCTTTCCAGTGCTTTAGCTTGAGATAATGTGGACTAACGTCATCAATGACGTTATACTCCACATCGTTTGAATAGACCCGAGGATTAAAGTCCAGGTGACCAGACAAGTAATTATGAACACCTAAAGCACGAGCCCACATCGTTTTTCCCGTCCTTGAATCACCCTCAATGATGATGCTAATAGGTCTCTCTGGCCGCGCAGCGGCATCTCTCCCGAAATAGACATCAGCCCACCTTTGCATCTCCACGGGGACGTTAGTGAATGTGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGCCTTATGAAAGAGGCGTTCGATGTTAGCCTTGACATGATGATAACTAACTATGAACGTCCTTGGATCACCGACCTTGATAATGTCGAGAGCCTCTCCCGCACTTCCTGCATTGACGGCGTTGCGGTAGACGTCGTCTTTGTTGGCCTTTGAACTCCCAGACACTTTGTACTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAGTTCTTGACGGCATTGGCGTCTTTGGCTGCCTGTATGTTTGGGTGAAAACAGGCAGACCTTCTTGGGTGAGTAAGGTCGAAAAATCTAGCATCCTTGATGTTAGATTTGTCTGATAATTGGACGAGACGGTGTAAGTGTGGGAGTCCGTCGGAATGTTCCTCTCGTGCGACTCTGATATACGTTGGTTTGACGACTGACCAGTGAAGATGCTGAAGCATCTGAAGAGCTTCATCTTTGGATATGTCGCACTGAGGATATGTTAAGAAAGTGTTTTTGGCAGTTAAACGAAATGAACTGGGGTTCCGTGGCATTTTTGTGAATATGAGCCAGGACACCAGGGGGAGCTCTCTCTAAAACTTTATTTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTGGGGGACACCAGGGGCAAAAGCGGCCATCCGTAATAATATT
Gene Information
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NCBI Accession
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YP_010087782.1
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Location
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217-972 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAA |
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Protein Sequence
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MPKRDAPWRTMAGTSKVTRSVNYSPRGGIGPKFDKASAWVNRPMYRKPRIYRALRGPDVPKGCEGPCKVQPFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFFLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKMDLRDRFQVMRRFYAKVTGGQYASNEQALVRRFWRVNIRFVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
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NCBI Accession
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YP_010087783.1
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Location
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969-1367 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAGATTTAGTCGCTTAGTCATGTTGTACTTAGACAATATAGGCGTTATTTCAATTAATAATGTTATTCGAGCTGTTCGCTTCGCGACAGACAGATCATATGTAAATGATGTACTTGAAAATCATGAAATAAAATTCTTATTTTATTAA |
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Protein Sequence
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MDSRTGEPITAHQAESGVFIWEVPNPLYFKINQVEVPPFSLITIYHVQIRFNHKLRRALGLHKAFLNFQVWTTLLRVSGTTYLNRFSRLVMLYLDNIGVISINNVIRAVRFATDRSYVNDVLENHEIKFLFY |
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NCBI Accession
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YP_010087784.1
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Location
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1114-1503 |
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Gene Name
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AC2 |
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Protein Name
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transactivator protein |
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Coding Region
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ATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAGACGAGCGAAGAGGAGAGCTGTTCGTCGTAGAAGGTTGGACCTGAACTGCGGCTGTTCCATATTCCTGCACATCAATTGCGTCAATCATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAG |
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Protein Sequence
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MRNSSPSTPPSIKAQHRRAKRRAVRRRRLDLNCGCSIFLHINCVNHGFTHRGTHHCASSREWRFYLGGSKSPLFQDKPGGGSTVLPDHDIPCPDKVQPQTEEGTGSTQSLPEFPSLDDIASSFWDDVFK |
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NCBI Accession
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YP_010087785.1
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Location
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1454-2494 |
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Gene Name
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AC1 |
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Protein Name
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replication-associated protein |
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Coding Region
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ATGCCACGGAACCCCAGTTCATTTCGTTTAACTGCCAAAAACACTTTCTTAACATATCCTCAGTGCGACATATCCAAAGATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAGTTAGTTATCATCATGTCAAGGCTAACATCGAACGCCTCTTTCATAAGGCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCACATTCACTAACGTCCCCGTGGAGATGCAAAGGTGGGCTGATGTCTATTTCGGGAGAGATGCCGCTGCGCGGCCAGAGAGACCTATTAGCATCATCATTGAGGGTGATTCAAGGACGGGAAAAACGATGTGGGCTCGTGCTTTAGGTGTTCATAATTACTTGTCTGGTCACCTGGACTTTAATCCTCGGGTCTATTCAAACGATGTGGAGTATAACGTCATTGATGACGTTAGTCCACATTATCTCAAGCTAAAGCACTGGAAAGAGCTAATAGGGTCCCAAAGAGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCATCCATTGTGCTTTGTAACCCGGGAGAGGGGGCTTCATATAAAGACTTCCTAGACAAAGAAGAAAACGCATCACTAAAAGCGTGGACGCTTCATAATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAG |
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Protein Sequence
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MPRNPSSFRLTAKNTFLTYPQCDISKDEALQMLQHLHWSVVKPTYIRVAREEHSDGLPHLHRLVQLSDKSNIKDARFFDLTHPRRSACFHPNIQAAKDANAVKNYITKEGDYCESGQYKVSGSSKANKDDVYRNAVNAGSAGEALDIIKVGDPRTFIVSYHHVKANIERLFHKAPEPWTPPFQLSTFTNVPVEMQRWADVYFGRDAAARPERPISIIIEGDSRTGKTMWARALGVHNYLSGHLDFNPRVYSNDVEYNVIDDVSPHYLKLKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFVTINAPLYQSTT |
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NCBI Accession
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YP_010087786.1
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Location
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2023-2415 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAG |
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Protein Sequence
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MKLFRCFSIFTGQSSNQRISESHERNIPTDSHTYTVSSNYQTNLTSRMLDFSTLLTQEGLPVFTQTYRQPKTPMPSRTTSPKRVIIVNPDSTKCLGVQRPTKTTSTATPSMQEVRERLSTLSRSVIQGRS |