Croton yellow vein mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000857305.1 |
| Isolate |
India |
| Release date |
2015/2/13 |
| Submitter |
Mandal,B., Pappu,H.R., Muniyappa,V. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGAAAAAAAAAAGTGGGCCCCATGGCGCACTAACTGACAAATACATCTCCACCAATGAAAAGAGCTCCTCAGAGCTTAATTGTTTTGTGGTCCCCTATTTAAACTTCGCCACCAAGTAGTGCATTGCGCACTATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGGTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATGCTCCTGACACATTGGGGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCCAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGTCGTCTCAACTTCGACAGCCCATATGTGAACCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCGAACAGACCTATGTACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAAGGGATGTGAAGGCCCATGTAAGGTGCAGTCTTTTGATGCGAAGAATGATATTGGTCACATGGGTAAGGTTATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTCTGTGTGAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACCAAGAACCATACGAATACTGTTATGTTTTGGATCGTTAGAGATAGGCGTCCTTCAGGAACCCCAAATGATTTCCAGCAAGTGTTCAATGTTTATGATAATGAGCCCTCTACGGCTACTGTGAAGAACGACCAGCGTGATCGTTTTCAGGTGTTGAGGAGGTTTCAAGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATTAGGAAATTCTATCGTGTCAACAATTATGTGGTGTATAATCACCAGGAAGCTGGGAAGTATGAAAATCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAACATTAATAAAGATTGAATTTTATTGAATATGATTGGTCTACATATACAACGTGATGTAATACATTCCATAATACATGATCAACTGATTTAAGTACAGTGTTAATACTGATAACTCCTAAGTTATTTAAATACTTAAGAACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGAACGGTGATGATGTCTTCCTTCATTAGGAATGGCCTGTTGTGGTGTTGTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGGCTATGGATATGAAGTATGAACACCCACACGGTAGATCAACTCGTCGACGCCTGATCCCCTTCTTGGCTATCTTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTTTTCTCTTCATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATTACTGTAGACTTTTGGGCTAAGGTCTAGATGACCACACAGATAATTATGTGGTCCAAGTGATCTGGCCCACATCGTCTTCCCAGTTCTACTGTCACCCTCGATCACTATACTTATGGGCCTTATAGGCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCACTCCTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCTTCGGTTGAACCTGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGAGCTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCGGAACTTGGATTTACCTTTGAATTGGATGAGGGCATGGATATGCATAGACCCATCTTGGTGTTTCTCTTGGGCTACTCTGATAAATAATCTATTAGACGGACAGGAAATGTTTTTAAGGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTTTGGCATTAACACAAAAAGAGTTAATACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCGGGGGACTCATTTATATGGTGTCCCTAAATGGCATTTCTGTAATTTGGTAAAGTAATTCAAAATTCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_694928.1
|
|
Location
|
145-501 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGGTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATGCTCCTGACACATTGGGGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCCAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGTCGTCTCAACTTCGACAGCCCATATGTGAACCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCGAACAGACCTATGTACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAA |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDLISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTYVQEAQDVQDVQKPRCP |
|
NCBI Accession
|
NP_694929.1
|
|
Location
|
290-613 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGGGTCAGCCCAATACCCCTAGTAACATCAGAAAGACAAATAACCTTACCCATGTGACCAATATCATTCTTCGCATCAAAAGACTGCACCTTACATGGGCCTTCACATCCCTTAGGGACATCTGGGCTTCTGTACATCCTGTACATCCTGGGCTTCCTGTACATAGGTCTGTTCGCCCATGCCTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGTTCACATATGGGCTGTCGAAGTTGAGACGACGGCGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGACGCTTCGACATAATTTCTGGCCCTAA |
|
Protein Sequence
|
MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRDIWASVHPVHPGLPVHRSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHNFWP |
|
NCBI Accession
|
NP_694930.1
|
|
Location
|
305-1075 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGTCGTCTCAACTTCGACAGCCCATATGTGAACCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCGAACAGACCTATGTACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAAGGGATGTGAAGGCCCATGTAAGGTGCAGTCTTTTGATGCGAAGAATGATATTGGTCACATGGGTAAGGTTATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTCTGTGTGAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACCAAGAACCATACGAATACTGTTATGTTTTGGATCGTTAGAGATAGGCGTCCTTCAGGAACCCCAAATGATTTCCAGCAAGTGTTCAATGTTTATGATAATGAGCCCTCTACGGCTACTGTGAAGAACGACCAGCGTGATCGTTTTCAGGTGTTGAGGAGGTTTCAAGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATTAGGAAATTCTATCGTGTCAACAATTATGTGGTGTATAATCACCAGGAAGCTGGGAAGTATGAAAATCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
|
NCBI Accession
|
NP_694931.1
|
|
Location
|
1078-1482 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACACAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAGACCCAAGTTCTTAAGTATTTAAATAACTTAGGAGTTATCAGTATTAACACTGTACTTAAATCAGTTGATCATGTATTATGGAATGTATTACATCACGTTGTATATGTAGACCAATCATATTCAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAENGVFIWEIQNPLYFKITQHHNRPFLMKEDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINTVLKSVDHVLWNVLHHVVYVDQSYSIKFNLY |
|
NCBI Accession
|
NP_694932.1
|
|
Location
|
1223-1627 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGATCAGGCGTCGACGAGTTGATCTACCGTGTGGGTGTTCATACTTCATATCCATAGCCTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACACAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA |
|
Protein Sequence
|
MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIACHNHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNTTPQQAIPNEGRHHHRSDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGI |
|
NCBI Accession
|
NP_694933.1
|
|
Location
|
1530-2615 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCTCGTATTAACTCTTTTTGTGTTAATGCCAAAAATATCTTCCTTACTTATCCCAAATGCCCAATACCCAAAGAACAAATGCTCGAAATCCTTAAAAACATTTCCTGTCCGTCTAATAGATTATTTATCAGAGTAGCCCAAGAGAAACACCAAGATGGGTCTATGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAATAGCTCCACCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCACGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCAGGTTCAACCGAAGCAGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAGGAGTGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGCCTATAAGGCCCATAAGTATAGTGATCGAGGGTGACAGTAGAACTGGGAAGACGATGTGGGCCAGATCACTTGGACCACATAATTATCTGTGTGGTCATCTAGACCTTAGCCCAAAAGTCTACAGTAATGATGCCTGGTATAACGTAATTGATGACGTAGACCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAAGGACTGGCAATCAAATACAAAATACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACAATCTTCCTCTGCAATCCAGGACCTGACTCAAGTTATAAAGAGTTCTTGGATGAAGAGAAAAATGCTGCACTCAAGAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGATCAGGCGTCGACGAGTTGA |
|
Protein Sequence
|
MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILKNISCPSNRLFIRVAQEKHQDGSMHIHALIQFKGKSKFRNPRHFDVTHPNSSTQFHPNFQGAKSSSDVKSYIEKDSDYIDWGEFQIDGRSARGGQQTANDAAAEALNAGSTEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPDSSYKEFLDEEKNAALKNWALKNATFITLEGPLYSGSNQSAAQDSQEGDQASTS |
|
NCBI Accession
|
NP_694934.1
|
|
Location
|
2201-2458 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTATGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAATAGCTCCACCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCACGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA |
|
Protein Sequence
|
MGLCISMPSSNSKVNPSSETPDISMSLTLIAPPNSIQTSRELSPAPMSSPTSRRTVITSTGVSFRSMEDLHEEVNRQLMMLQQRP |