Cowpea golden mosaic virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCTGAGGGCCGCTTTCGGTGTACCCCACGCACCAATCAGGATGCGCCATTTGCGCTTATTTATTAACTGGGCCTCTATATATTGGGCTTTGTTGTGTATTGGATTTGCACCATGTTTAACCCACTAACTGAACCCCTCCCAGTTACTCCTCACGGTTTGATGTGTATGTTGGCTTTGAAATATTTGCAGGAGTTCGAGAAATCTGTACATTTGACTCCGTGTGATAATACTGAGTTGTTGTTACTCCGCCGTGTTATTCGTGCAAGGACTTACGATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGATGTTCCGTATGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGGCCAGACACGACGTCAAACACACGGGAACTTTTCAGTGTTGTTCAGACGTTACTCGGGGAATGGGTTTGACTCATCGCGTTGGGAAGCGTTTCACCATAAAGACTATCGGTATCTGGGGCAAGATCTGGATGGATGATAACATCAAGTTGAAGAACCACACTAACATAGTCATCTTTTTCTTAGTGCGTGACCGGCGTCCTAGTGGAGAACCAGTTTCTTTTGGAAGTTTGTTTAATATGTTCGATAACGAGCCAACTACGGCCACTGTGAAGCAAGAATATCGTGATCGTTTTCAGGTTATGAGGAGGTTTCATGCATCTGTTACCGGTGGACAGTACGCTTCAAAGGAACAGGCGTTGGTTAAGCGTTTTTTCAGGAACATTAATCATCGAGTTGTTTACAACCAACAAGAAGGCGCAGAGTACAAGAATCATCATGAAAATGCTTTGATGTTGTATATGGCATGTAGTCATGCCTCTAATCCTGTGTACGCGACAATTAAAGTTCGCATTTATTTTTACGACTCCATTACGAATTAATAAAGATTGAATATTATTTCATATTTTGGGTCTACATCAATTGTTCCATGAATTACATCAAACAACACATGATCGCACGCTAAAATACATGTATTAATTGAAATGACACCTAATCTATCTAAATAACGCATAACTTGTGTTTTAAAGACTCTCAAGAAACGCCAGGTCTGACTCCGTAAGACTGTTGAGATAGTCAATGTCATCCAGCATTTGTGAATCCCCAAGGCTTTCCTGAGGTTGTGGTTGAACTGGAGTCGAATTACTATTTCGTGGAACGGTAATCCCATTACCCATTCGTGGTGGCTCATCACCTTGAAATATATTGCATTTGGGACTGTCCAGATATAGGCGCCATTCTGCGCTTGAGCTGCAGTGATGGACTCCCCTGTGCGTAAATCCATGGTTGGCACACTCTATTGCGAGGTAGTATGAACAACCACAGGTTAAATCAACTCGTCGGCGCCTGATCTGTTTCTTTTTAGCTATTCTGTGTCTGACTTTTATTGGAATTTGAGTAGAGCGGGAAGGAGATGTCGACGAAGATTGCATTCTTTAATGCCCACTGCTTTAAATCTTTATTTTTATCTTCATCCAAGAAGCTTTTATAGGAGCTATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAATCGTGCTGGGCACCCATGAATTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCGATGACGTTATACCAGGCATTATTGCTATACACTTTTGGACTTAGGTCCAGATGACCGCATAGGTAATTGTGCGCACCTAATGATCTGGCCCACATTGTTTTCCCTGTTCTTGACTCCCCTTCAATGACTATGCTAATCGGTCTATCCGGCCGCGCAGCGGCATCCACCACGTTGATTGACGCCCAATCTTTCATGATCTGAGGAACGTTATTGAATGAGTTTAACCTAAACGGACAAGAATAGGGCTCTAATGGCTTACTGAAAATGCGATCTAAGTTGCTTTTAATGTTGTGGTAATGTAAGACGAAGTCCTTCGGAGCAAGTTCTTTCACAATGTTGAGAGCCTTCGTCGGACTTCCAGAGTTAATTGCTGCGGCGTAAGCGTCGTTGGCTGATTGTTGTCCTCCTCGGCTAGATCTTCCATCGATCTGGAATTCGCCCCATGAGATGGTGTCTCCATCCTTCTCGATATAGGACTTGACGTCGGAGCTCGATTTTGCTCCCTGAATGTTTGGATGAAACACGGCAGATCTGTTTCCAGAGACAAGGTCGAACAGTCTTGGATTTGTGATCTGGAGCTTACCTTCGAATTGTAGCAGTACGTGCAGATGAGGTTCCCCATCTTCGTGTAATTCCCTTGCTACCTTGATGAATTTCTTATTGACGGCTGTTGGTATCTGCCGGAGAAGCTCTAGGGCTTCCTCTTTCGGAAGAGAGCATCTGGGATAAGTGGCGAAAATGTTTTTGGCATTCACTCTAAACGCTCCGCTGCGTGGCATATTTGCAATTCTTGCGTTTACACCGATTGCTCTCAAAATCTTTTATCGCATATATTGGTGTAACGGGGTACCTAATATACTATATACCCCAATACACCTGGTAGTGACATCTGTCCCTAGTCCCCACACCTTTAGCGGCCCTCAGTATAATATT
Gene Information
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NCBI Accession
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AAB87605.1
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Location
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113-451 |
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Gene Name
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v2 |
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Protein Name
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precoat protein |
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Coding Region
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ATGTTTAACCCACTAACTGAACCCCTCCCAGTTACTCCTCACGGTTTGATGTGTATGTTGGCTTTGAAATATTTGCAGGAGTTCGAGAAATCTGTACATTTGACTCCGTGTGATAATACTGAGTTGTTGTTACTCCGCCGTGTTATTCGTGCAAGGACTTACGATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGA |
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Protein Sequence
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MFNPLTEPLPVTPHGLMCMLALKYLQEFEKSVHLTPCDNTELLLLRRVIRARTYDEAKRRYHIFHTFQGSKEVDVRHPSCDSCVLRAFQQKAGLGEPAHEPQAHDVPALEES |
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NCBI Accession
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AAB87606.1
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Location
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276-1037 |
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Gene Name
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cp |
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Protein Name
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coat protein |
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Coding Region
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ATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGATGTTCCGTATGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGGCCAGACACGACGTCAAACACACGGGAACTTTTCAGTGTTGTTCAGACGTTACTCGGGGAATGGGTTTGACTCATCGCGTTGGGAAGCGTTTCACCATAAAGACTATCGGTATCTGGGGCAAGATCTGGATGGATGATAACATCAAGTTGAAGAACCACACTAACATAGTCATCTTTTTCTTAGTGCGTGACCGGCGTCCTAGTGGAGAACCAGTTTCTTTTGGAAGTTTGTTTAATATGTTCGATAACGAGCCAACTACGGCCACTGTGAAGCAAGAATATCGTGATCGTTTTCAGGTTATGAGGAGGTTTCATGCATCTGTTACCGGTGGACAGTACGCTTCAAAGGAACAGGCGTTGGTTAAGCGTTTTTTCAGGAACATTAATCATCGAGTTGTTTACAACCAACAAGAAGGCGCAGAGTACAAGAATCATCATGAAAATGCTTTGATGTTGTATATGGCATGTAGTCATGCCTCTAATCCTGTGTACGCGACAATTAAAGTTCGCATTTATTTTTACGACTCCATTACGAATTAA |
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Protein Sequence
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MKRSADTIYSTPSKARRRLTFDTPRATPASLGRSNKRRAWENRPMNRKPMMYRLWRSPDVPYGCEGPCKVQSFEARHDVKHTGTFQCCSDVTRGMGLTHRVGKRFTIKTIGIWGKIWMDDNIKLKNHTNIVIFFLVRDRRPSGEPVSFGSLFNMFDNEPTTATVKQEYRDRFQVMRRFHASVTGGQYASKEQALVKRFFRNINHRVVYNQQEGAEYKNHHENALMLYMACSHASNPVYATIKVRIYFYDSITN |
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NCBI Accession
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AAB87609.1
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Location
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1034-1438 |
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Gene Name
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c3 |
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Protein Name
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c3 protein |
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Coding Region
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ATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCGCAGAATGGCGCCTATATCTGGACAGTCCCAAATGCAATATATTTCAAGGTGATGAGCCACCACGAATGGGTAATGGGATTACCGTTCCACGAAATAGTAATTCGACTCCAGTTCAACCACAACCTCAGGAAAGCCTTGGGGATTCACAAATGCTGGATGACATTGACTATCTCAACAGTCTTACGGAGTCAGACCTGGCGTTTCTTGAGAGTCTTTAAAACACAAGTTATGCGTTATTTAGATAGATTAGGTGTCATTTCAATTAATACATGTATTTTAGCGTGCGATCATGTGTTGTTTGATGTAATTCATGGAACAATTGATGTAGACCCAAAATATGAAATAATATTCAATCTTTATTAA |
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Protein Sequence
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MDLRTGESITAAQAQNGAYIWTVPNAIYFKVMSHHEWVMGLPFHEIVIRLQFNHNLRKALGIHKCWMTLTISTVLRSQTWRFLRVFKTQVMRYLDRLGVISINTCILACDHVLFDVIHGTIDVDPKYEIIFNLY |
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NCBI Accession
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AAB87608.1
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Location
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1179-1586 |
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Gene Name
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trap |
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Protein Name
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transcription activation protein |
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Coding Region
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ATGCAATCTTCGTCGACATCTCCTTCCCGCTCTACTCAAATTCCAATAAAAGTCAGACACAGAATAGCTAAAAAGAAACAGATCAGGCGCCGACGAGTTGATTTAACCTGTGGTTGTTCATACTACCTCGCAATAGAGTGTGCCAACCATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCGCAGAATGGCGCCTATATCTGGACAGTCCCAAATGCAATATATTTCAAGGTGATGAGCCACCACGAATGGGTAATGGGATTACCGTTCCACGAAATAGTAATTCGACTCCAGTTCAACCACAACCTCAGGAAAGCCTTGGGGATTCACAAATGCTGGATGACATTGACTATCTCAACAGTCTTACGGAGTCAGACCTGGCGTTTCTTGAGAGTCTTTAA |
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Protein Sequence
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MQSSSTSPSRSTQIPIKVRHRIAKKKQIRRRRVDLTCGCSYYLAIECANHGFTHRGVHHCSSSAEWRLYLDSPKCNIFQGDEPPRMGNGITVPRNSNSTPVQPQPQESLGDSQMLDDIDYLNSLTESDLAFLESL |
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NCBI Accession
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AAB87607.1
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Location
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1516-2574 |
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Gene Name
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rep |
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Protein Name
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replication-associated protein |
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Coding Region
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ATGCCACGCAGCGGAGCGTTTAGAGTGAATGCCAAAAACATTTTCGCCACTTATCCCAGATGCTCTCTTCCGAAAGAGGAAGCCCTAGAGCTTCTCCGGCAGATACCAACAGCCGTCAATAAGAAATTCATCAAGGTAGCAAGGGAATTACACGAAGATGGGGAACCTCATCTGCACGTACTGCTACAATTCGAAGGTAAGCTCCAGATCACAAATCCAAGACTGTTCGACCTTGTCTCTGGAAACAGATCTGCCGTGTTTCATCCAAACATTCAGGGAGCAAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGATGGAGACACCATCTCATGGGGCGAATTCCAGATCGATGGAAGATCTAGCCGAGGAGGACAACAATCAGCCAACGACGCTTACGCCGCAGCAATTAACTCTGGAAGTCCGACGAAGGCTCTCAACATTGTGAAAGAACTTGCTCCGAAGGACTTCGTCTTACATTACCACAACATTAAAAGCAACTTAGATCGCATTTTCAGTAAGCCATTAGAGCCCTATTCTTGTCCGTTTAGGTTAAACTCATTCAATAACGTTCCTCAGATCATGAAAGATTGGGCGTCAATCAACGTGGTGGATGCCGCTGCGCGGCCGGATAGACCGATTAGCATAGTCATTGAAGGGGAGTCAAGAACAGGGAAAACAATGTGGGCCAGATCATTAGGTGCGCACAATTACCTATGCGGTCATCTGGACCTAAGTCCAAAAGTGTATAGCAATAATGCCTGGTATAACGTCATCGATGACGTCGATCCGCACTATCTAAAGCACTTTAAAGAATTCATGGGTGCCCAGCACGATTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATAGCTCCTATAAAAGCTTCTTGGATGAAGATAAAAATAAAGATTTAAAGCAGTGGGCATTAAAGAATGCAATCTTCGTCGACATCTCCTTCCCGCTCTACTCAAATTCCAATAAAAGTCAGACACAGAATAGCTAA |
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Protein Sequence
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MPRSGAFRVNAKNIFATYPRCSLPKEEALELLRQIPTAVNKKFIKVARELHEDGEPHLHVLLQFEGKLQITNPRLFDLVSGNRSAVFHPNIQGAKSSSDVKSYIEKDGDTISWGEFQIDGRSSRGGQQSANDAYAAAINSGSPTKALNIVKELAPKDFVLHYHNIKSNLDRIFSKPLEPYSCPFRLNSFNNVPQIMKDWASINVVDAAARPDRPISIVIEGESRTGKTMWARSLGAHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKSFLDEDKNKDLKQWALKNAIFVDISFPLYSNSNKSQTQNS |
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NCBI Accession
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AAB87610.1
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Location
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2124-2417 |
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Gene Name
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c4 |
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Protein Name
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c4 protein |
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Coding Region
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ATGGGGAACCTCATCTGCACGTACTGCTACAATTCGAAGGTAAGCTCCAGATCACAAATCCAAGACTGTTCGACCTTGTCTCTGGAAACAGATCTGCCGTGTTTCATCCAAACATTCAGGGAGCAAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGATGGAGACACCATCTCATGGGGCGAATTCCAGATCGATGGAAGATCTAGCCGAGGAGGACAACAATCAGCCAACGACGCTTACGCCGCAGCAATTAACTCTGGAAGTCCGACGAAGGCTCTCAACATTGTGA |
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Protein Sequence
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MGNLICTYCYNSKVSSRSQIQDCSTLSLETDLPCFIQTFREQNRAPTSSPISRRMETPSHGANSRSMEDLAEEDNNQPTTLTPQQLTLEVRRRLSTL |