Genus | Begomovirus |
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Isolate | Nigeria |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | AAB87605.1 |
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Location | 113-451 |
Gene Name | v2 |
Protein Name | precoat protein |
Coding Region | ATGTTTAACCCACTAACTGAACCCCTCCCAGTTACTCCTCACGGTTTGATGTGTATGTTGGCTTTGAAATATTTGCAGGAGTTCGAGAAATCTGTACATTTGACTCCGTGTGATAATACTGAGTTGTTGTTACTCCGCCGTGTTATTCGTGCAAGGACTTACGATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGA |
Protein Sequence | MFNPLTEPLPVTPHGLMCMLALKYLQEFEKSVHLTPCDNTELLLLRRVIRARTYDEAKRRYHIFHTFQGSKEVDVRHPSCDSCVLRAFQQKAGLGEPAHEPQAHDVPALEES |
NCBI Accession | AAB87606.1 |
---|---|
Location | 276-1037 |
Gene Name | cp |
Protein Name | coat protein |
Coding Region | ATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGATGTTCCGTATGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGGCCAGACACGACGTCAAACACACGGGAACTTTTCAGTGTTGTTCAGACGTTACTCGGGGAATGGGTTTGACTCATCGCGTTGGGAAGCGTTTCACCATAAAGACTATCGGTATCTGGGGCAAGATCTGGATGGATGATAACATCAAGTTGAAGAACCACACTAACATAGTCATCTTTTTCTTAGTGCGTGACCGGCGTCCTAGTGGAGAACCAGTTTCTTTTGGAAGTTTGTTTAATATGTTCGATAACGAGCCAACTACGGCCACTGTGAAGCAAGAATATCGTGATCGTTTTCAGGTTATGAGGAGGTTTCATGCATCTGTTACCGGTGGACAGTACGCTTCAAAGGAACAGGCGTTGGTTAAGCGTTTTTTCAGGAACATTAATCATCGAGTTGTTTACAACCAACAAGAAGGCGCAGAGTACAAGAATCATCATGAAAATGCTTTGATGTTGTATATGGCATGTAGTCATGCCTCTAATCCTGTGTACGCGACAATTAAAGTTCGCATTTATTTTTACGACTCCATTACGAATTAA |
Protein Sequence | MKRSADTIYSTPSKARRRLTFDTPRATPASLGRSNKRRAWENRPMNRKPMMYRLWRSPDVPYGCEGPCKVQSFEARHDVKHTGTFQCCSDVTRGMGLTHRVGKRFTIKTIGIWGKIWMDDNIKLKNHTNIVIFFLVRDRRPSGEPVSFGSLFNMFDNEPTTATVKQEYRDRFQVMRRFHASVTGGQYASKEQALVKRFFRNINHRVVYNQQEGAEYKNHHENALMLYMACSHASNPVYATIKVRIYFYDSITN |
NCBI Accession | AAB87609.1 |
---|---|
Location | 1034-1438 |
Gene Name | c3 |
Protein Name | c3 protein |
Coding Region | ATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCGCAGAATGGCGCCTATATCTGGACAGTCCCAAATGCAATATATTTCAAGGTGATGAGCCACCACGAATGGGTAATGGGATTACCGTTCCACGAAATAGTAATTCGACTCCAGTTCAACCACAACCTCAGGAAAGCCTTGGGGATTCACAAATGCTGGATGACATTGACTATCTCAACAGTCTTACGGAGTCAGACCTGGCGTTTCTTGAGAGTCTTTAAAACACAAGTTATGCGTTATTTAGATAGATTAGGTGTCATTTCAATTAATACATGTATTTTAGCGTGCGATCATGTGTTGTTTGATGTAATTCATGGAACAATTGATGTAGACCCAAAATATGAAATAATATTCAATCTTTATTAA |
Protein Sequence | MDLRTGESITAAQAQNGAYIWTVPNAIYFKVMSHHEWVMGLPFHEIVIRLQFNHNLRKALGIHKCWMTLTISTVLRSQTWRFLRVFKTQVMRYLDRLGVISINTCILACDHVLFDVIHGTIDVDPKYEIIFNLY |
NCBI Accession | AAB87608.1 |
---|---|
Location | 1179-1586 |
Gene Name | trap |
Protein Name | transcription activation protein |
Coding Region | ATGCAATCTTCGTCGACATCTCCTTCCCGCTCTACTCAAATTCCAATAAAAGTCAGACACAGAATAGCTAAAAAGAAACAGATCAGGCGCCGACGAGTTGATTTAACCTGTGGTTGTTCATACTACCTCGCAATAGAGTGTGCCAACCATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCGCAGAATGGCGCCTATATCTGGACAGTCCCAAATGCAATATATTTCAAGGTGATGAGCCACCACGAATGGGTAATGGGATTACCGTTCCACGAAATAGTAATTCGACTCCAGTTCAACCACAACCTCAGGAAAGCCTTGGGGATTCACAAATGCTGGATGACATTGACTATCTCAACAGTCTTACGGAGTCAGACCTGGCGTTTCTTGAGAGTCTTTAA |
Protein Sequence | MQSSSTSPSRSTQIPIKVRHRIAKKKQIRRRRVDLTCGCSYYLAIECANHGFTHRGVHHCSSSAEWRLYLDSPKCNIFQGDEPPRMGNGITVPRNSNSTPVQPQPQESLGDSQMLDDIDYLNSLTESDLAFLESL |
NCBI Accession | AAB87607.1 |
---|---|
Location | 1516-2574 |
Gene Name | rep |
Protein Name | replication-associated protein |
Coding Region | ATGCCACGCAGCGGAGCGTTTAGAGTGAATGCCAAAAACATTTTCGCCACTTATCCCAGATGCTCTCTTCCGAAAGAGGAAGCCCTAGAGCTTCTCCGGCAGATACCAACAGCCGTCAATAAGAAATTCATCAAGGTAGCAAGGGAATTACACGAAGATGGGGAACCTCATCTGCACGTACTGCTACAATTCGAAGGTAAGCTCCAGATCACAAATCCAAGACTGTTCGACCTTGTCTCTGGAAACAGATCTGCCGTGTTTCATCCAAACATTCAGGGAGCAAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGATGGAGACACCATCTCATGGGGCGAATTCCAGATCGATGGAAGATCTAGCCGAGGAGGACAACAATCAGCCAACGACGCTTACGCCGCAGCAATTAACTCTGGAAGTCCGACGAAGGCTCTCAACATTGTGAAAGAACTTGCTCCGAAGGACTTCGTCTTACATTACCACAACATTAAAAGCAACTTAGATCGCATTTTCAGTAAGCCATTAGAGCCCTATTCTTGTCCGTTTAGGTTAAACTCATTCAATAACGTTCCTCAGATCATGAAAGATTGGGCGTCAATCAACGTGGTGGATGCCGCTGCGCGGCCGGATAGACCGATTAGCATAGTCATTGAAGGGGAGTCAAGAACAGGGAAAACAATGTGGGCCAGATCATTAGGTGCGCACAATTACCTATGCGGTCATCTGGACCTAAGTCCAAAAGTGTATAGCAATAATGCCTGGTATAACGTCATCGATGACGTCGATCCGCACTATCTAAAGCACTTTAAAGAATTCATGGGTGCCCAGCACGATTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATAGCTCCTATAAAAGCTTCTTGGATGAAGATAAAAATAAAGATTTAAAGCAGTGGGCATTAAAGAATGCAATCTTCGTCGACATCTCCTTCCCGCTCTACTCAAATTCCAATAAAAGTCAGACACAGAATAGCTAA |
Protein Sequence | MPRSGAFRVNAKNIFATYPRCSLPKEEALELLRQIPTAVNKKFIKVARELHEDGEPHLHVLLQFEGKLQITNPRLFDLVSGNRSAVFHPNIQGAKSSSDVKSYIEKDGDTISWGEFQIDGRSSRGGQQSANDAYAAAINSGSPTKALNIVKELAPKDFVLHYHNIKSNLDRIFSKPLEPYSCPFRLNSFNNVPQIMKDWASINVVDAAARPDRPISIVIEGESRTGKTMWARSLGAHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKSFLDEDKNKDLKQWALKNAIFVDISFPLYSNSNKSQTQNS |
NCBI Accession | AAB87610.1 |
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Location | 2124-2417 |
Gene Name | c4 |
Protein Name | c4 protein |
Coding Region | ATGGGGAACCTCATCTGCACGTACTGCTACAATTCGAAGGTAAGCTCCAGATCACAAATCCAAGACTGTTCGACCTTGTCTCTGGAAACAGATCTGCCGTGTTTCATCCAAACATTCAGGGAGCAAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGATGGAGACACCATCTCATGGGGCGAATTCCAGATCGATGGAAGATCTAGCCGAGGAGGACAACAATCAGCCAACGACGCTTACGCCGCAGCAATTAACTCTGGAAGTCCGACGAAGGCTCTCAACATTGTGA |
Protein Sequence | MGNLICTYCYNSKVSSRSQIQDCSTLSLETDLPCFIQTFREQNRAPTSSPISRRMETPSHGANSRSMEDLAEEDNNQPTTLTPQQLTLEVRRRLSTL |
1 |
Krishnan N, et al. 3 Biotech. 2022 Jul;12(7):145. doi: 10.1007/s13205-022-03206-2. Epub 2022 Jun 9. PMID: 35694238 |
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2 |
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3 |
RNAi-derived transgenic resistance to Mungbean yellow mosaic India virus in cowpea. Kumar S, et al. PLoS One. 2017 Oct 27;12(10):e0186786. doi: 10.1371/journal.pone.0186786. eCollection 2017. PMID: 29077738 |
4 |
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5 |
Alves-Freitas DMT, et al. Viruses. 2019 Jan 21;11(1):90. doi: 10.3390/v11010090. PMID: 30669683 |
6 |
Garcêz RM, et al. Springerplus. 2015 Sep 22;4:537. doi: 10.1186/s40064-015-1263-5. eCollection 2015. PMID: 26413443 |
7 |
Haq QM, et al. Virus Genes. 2011 Jun;42(3):429-39. doi: 10.1007/s11262-011-0591-y. Epub 2011 Mar 6. PMID: 21380756 |
8 |
Nanopore sequencing of a novel bipartite New World begomovirus infecting cowpea. Naito FYB, et al. Arch Virol. 2019 Jul;164(7):1907-1910. doi: 10.1007/s00705-019-04254-5. Epub 2019 Apr 10. PMID: 30972591 |
9 |
Biswas C, et al. Plant Dis. 2014 Nov;98(11):1592. doi: 10.1094/PDIS-07-14-0668-PDN. PMID: 30699809 |
10 |
Two new 'legumoviruses' (genus Begomovirus) naturally infecting soybean in Nigeria. Alabi OJ, et al. Arch Virol. 2010 May;155(5):643-56. doi: 10.1007/s00705-010-0630-3. Epub 2010 Mar 13. PMID: 20229118 |