Cotton yellow mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001669825.1 |
| Isolate |
Benin |
| Release date |
2016/6/19 |
| Submitter |
Leke,W.N., Khatabi,B., Mignouna,D.B., Brown,J.K., Fondong,V.N. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGCCCGCTTTATGTGGTCCCCCCTTGTGGTCCCCGCGCACTAGACATTGTCGTCCAATAAAATCAACGCCTGGAAGGCTATTTATTTGATTTTGTCTTTATATACTTGGCGCTTAAGTATTTAAATTTCAAAATGTGGGATCCACTTCTGAACGATTTCCCAGACTCTGTCCATGGGCTTCGTTGCATGTTAGCTGTAAAATATTTACAGGCCGTCGAAGATACATACGAGCCCAATACTCTGGGTTGGGATCTAATCAGAGATTTAATCTCCGTCATCAGAGCCAAGAGCTATGTCGAAGCGACCCGGCGATATCATCATTTCAACGCCCGTTTCGAAGGTGCGTCGAAGGCTGAATTTCGACAGCCCATACACCAACCGTGCAGCTGTCCCCACTGTCCCAGGCACAAGCAAACGACGTTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCATGTAAGATCCAGTCGTTTGATCAGCGTGATTCCGTAGTCCACACAGGTAACGTTAGGTGTCTAAGTGATGTGACCAGGGGAAATGGTCTCACTCATCGCACAGGTAAACGATTTTGCATTAAGACCGTTTACATATTAGGCAAAGTGTGGATGGACGAAAATGTGAAGAAATCCAATCACACCAACACCTGTATGTTCTGGTTAGTTAGGGATAGACGTCCTTATGGCCCCAGCCCCCAAGATTTCGGTCAGGTTTTTAACATGTTTGATAACGAGCCTAGCACAGCGACTGTCCAGAGTGACAAACGTGATCGCTACCAGGTTTTGAAGAGGTTCCATTATACGGTCACCGGAGGACCCTCTGGTTGCAAGGAGGCTGTAATTGTCAGGCGAAAATACAACTTATATCACAACGTGATTTATAATCATCAAGAGGCTGCCAAGTATGAGAATCATACAGAGAATGCATTGCTGCTGTACATGGCATGTACCCATGCCTCTAATCCCGTTTATGCTAGTCTTAAGATACGGATGTATTTCTACGATTCATTAATGAATTAATAAATATTAAATTTTATTTCATGATTGCTCTCAACTGCAATTGTATTTACAAGTACATTGTACAACACATGATCTACTGCCCTAATGACTAGATTAATTGAAATTACACCGATATTATCCAAGTATTTATACACTTGCGTACTAAATACCCTCAAGAAACGCCCAGTCGGAGGTCGTAAACTCGTCCAGACCTTGAAGTTCAGAAAACACTTGTGAATCCCCAAAGCCTTCCGCAACCGGTGGTTGAACCGGATTTGGATCGATATTATGTGAAACGGATTGTTGAACGGGTTTTCCAGGTGACTTGTTATCGTGAAATAGAGGGGATTTGGCACCTCCCATATAAACACGCCATTCCAAGCTTGAAGCGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTATTGCAGTCGATGTGTCTATAGAATGAGCACCCGCAAGAGAGATCCACTCTCCTACGTCGAACTACCTTCTTCTTCGCGAGTCGGTGCCTGACTTTGATCGGCACTGTCGTACAGTGGCTCCCAGAGGGTGACGAATTTTGCATTTGGAATTGTCCAAGCTTTCAATGATGCATTCTTTTCCTCGTCTAGGAATTCTTTATAGGAGGACGTTGGTCCAGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTGGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATTGGAATACACCTTTGGGCTGAGATCGAGATGCCCACACAGATAATTGTGTGGTCCCAAAGACCGGGCCCACATTGTCTTCCCGGTCCGACTGTCTCCTTCGATGACAATACTGATCGGTCTCCATGGCCGCGCAGCGGAACTCTTTACATTTTCCGACGCCCAATTATCAAGTTCCACCGGAACTCTCGAGAAAGAAGAAGAAAGAAATGGAGAAACATAAGGAGCCGGTGGCTCTACAAAAATCTTATCTAAATTACAATTTATATTATGAAAATGTAAAACAAAGTCTTTTGGGGCTAATTCTTTAATTATGCCAAGAGCTTCCGACTTACTTCCCGAGTTAATTGCTCTGGCGTAAGCGTCATTTGCAGACTCTTGACCTCCTCTTGCAGATCGCCCATCGATCTGAAACTGTCCCCATTCGAGGGTGTCTCCGTCTTTGTCCAGGTACGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTGGGGTGGAAACTGGCGCTACTGCTTGGGTGTACACAATCGAAGAGGCGATTGTTGGTACATGTGAGTTTGCCCTCGAACTGCAACAGCACATGAAGATGCGGTTCCCCATCTTGATGCAGCTCACGGCAGATTTTGATGAATTTAGGGTTTGTTGGCAACGATAAAGCTCTCAGCTGCTCTAAGAGGTGTTCTTTTGTTAGAGAACACCTTGGGTAAGTGAGAAAATAATTCTTGGCTTGTATTTTAAAACGCGGAGCTCTCATGTTGACTAGTCAATTGGAGACACCCCCCTGAAACTCTCTCCTATGTATTAGAGACAATATATATTGTCTCCAAATGGCATAAATGTAATTCTGTAAAGTTATATACTTTAATTTGAACTCAGATTCCTAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009256559.1
|
|
Location
|
147-497 |
|
Protein Name
|
AV2 |
|
Coding Region
|
ATGTGGGATCCACTTCTGAACGATTTCCCAGACTCTGTCCATGGGCTTCGTTGCATGTTAGCTGTAAAATATTTACAGGCCGTCGAAGATACATACGAGCCCAATACTCTGGGTTGGGATCTAATCAGAGATTTAATCTCCGTCATCAGAGCCAAGAGCTATGTCGAAGCGACCCGGCGATATCATCATTTCAACGCCCGTTTCGAAGGTGCGTCGAAGGCTGAATTTCGACAGCCCATACACCAACCGTGCAGCTGTCCCCACTGTCCCAGGCACAAGCAAACGACGTTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNDFPDSVHGLRCMLAVKYLQAVEDTYEPNTLGWDLIRDLISVIRAKSYVEATRRYHHFNARFEGASKAEFRQPIHQPCSCPHCPRHKQTTFMDVQAHVSKAQDVQNVQKP |
|
NCBI Accession
|
YP_009256560.1
|
|
Location
|
307-1083 |
|
Protein Name
|
AV1 |
|
Coding Region
|
ATGTCGAAGCGACCCGGCGATATCATCATTTCAACGCCCGTTTCGAAGGTGCGTCGAAGGCTGAATTTCGACAGCCCATACACCAACCGTGCAGCTGTCCCCACTGTCCCAGGCACAAGCAAACGACGTTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCATGTAAGATCCAGTCGTTTGATCAGCGTGATTCCGTAGTCCACACAGGTAACGTTAGGTGTCTAAGTGATGTGACCAGGGGAAATGGTCTCACTCATCGCACAGGTAAACGATTTTGCATTAAGACCGTTTACATATTAGGCAAAGTGTGGATGGACGAAAATGTGAAGAAATCCAATCACACCAACACCTGTATGTTCTGGTTAGTTAGGGATAGACGTCCTTATGGCCCCAGCCCCCAAGATTTCGGTCAGGTTTTTAACATGTTTGATAACGAGCCTAGCACAGCGACTGTCCAGAGTGACAAACGTGATCGCTACCAGGTTTTGAAGAGGTTCCATTATACGGTCACCGGAGGACCCTCTGGTTGCAAGGAGGCTGTAATTGTCAGGCGAAAATACAACTTATATCACAACGTGATTTATAATCATCAAGAGGCTGCCAAGTATGAGAATCATACAGAGAATGCATTGCTGCTGTACATGGCATGTACCCATGCCTCTAATCCCGTTTATGCTAGTCTTAAGATACGGATGTATTTCTACGATTCATTAATGAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTNRAAVPTVPGTSKRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVVHTGNVRCLSDVTRGNGLTHRTGKRFCIKTVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGPSPQDFGQVFNMFDNEPSTATVQSDKRDRYQVLKRFHYTVTGGPSGCKEAVIVRRKYNLYHNVIYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSLMN |
|
NCBI Accession
|
YP_009256561.1
|
|
Location
|
1080-1484 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATCCATCACTGCGCTTCAAGCTTGGAATGGCGTGTTTATATGGGAGGTGCCAAATCCCCTCTATTTCACGATAACAAGTCACCTGGAAAACCCGTTCAACAATCCGTTTCACATAATATCGATCCAAATCCGGTTCAACCACCGGTTGCGGAAGGCTTTGGGGATTCACAAGTGTTTTCTGAACTTCAAGGTCTGGACGAGTTTACGACCTCCGACTGGGCGTTTCTTGAGGGTATTTAGTACGCAAGTGTATAAATACTTGGATAATATCGGTGTAATTTCAATTAATCTAGTCATTAGGGCAGTAGATCATGTGTTGTACAATGTACTTGTAAATACAATTGCAGTTGAGAGCAATCATGAAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDSRTGESITALQAWNGVFIWEVPNPLYFTITSHLENPFNNPFHIISIQIRFNHRLRKALGIHKCFLNFKVWTSLRPPTGRFLRVFSTQVYKYLDNIGVISINLVIRAVDHVLYNVLVNTIAVESNHEIKFNIY |
|
NCBI Accession
|
YP_009256562.1
|
|
Location
|
1225-1632 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCAAAATTCGTCACCCTCTGGGAGCCACTGTACGACAGTGCCGATCAAAGTCAGGCACCGACTCGCGAAGAAGAAGGTAGTTCGACGTAGGAGAGTGGATCTCTCTTGCGGGTGCTCATTCTATAGACACATCGACTGCAATAACCATGGATTCACGCACAGGGGAATCCATCACTGCGCTTCAAGCTTGGAATGGCGTGTTTATATGGGAGGTGCCAAATCCCCTCTATTTCACGATAACAAGTCACCTGGAAAACCCGTTCAACAATCCGTTTCACATAATATCGATCCAAATCCGGTTCAACCACCGGTTGCGGAAGGCTTTGGGGATTCACAAGTGTTTTCTGAACTTCAAGGTCTGGACGAGTTTACGACCTCCGACTGGGCGTTTCTTGAGGGTATTTAG |
|
Protein Sequence
|
MQNSSPSGSHCTTVPIKVRHRLAKKKVVRRRRVDLSCGCSFYRHIDCNNHGFTHRGIHHCASSLEWRVYMGGAKSPLFHDNKSPGKPVQQSVSHNIDPNPVQPPVAEGFGDSQVFSELQGLDEFTTSDWAFLEGI |
|
NCBI Accession
|
YP_009256563.1
|
|
Location
|
1541-2617 |
|
Protein Name
|
AC1 |
|
Coding Region
|
ATGAGAGCTCCGCGTTTTAAAATACAAGCCAAGAATTATTTTCTCACTTACCCAAGGTGTTCTCTAACAAAAGAACACCTCTTAGAGCAGCTGAGAGCTTTATCGTTGCCAACAAACCCTAAATTCATCAAAATCTGCCGTGAGCTGCATCAAGATGGGGAACCGCATCTTCATGTGCTGTTGCAGTTCGAGGGCAAACTCACATGTACCAACAATCGCCTCTTCGATTGTGTACACCCAAGCAGTAGCGCCAGTTTCCACCCCAACATTCAGGGAGCTAAATCAAGCTCGGACGTCAAGTCGTACCTGGACAAAGACGGAGACACCCTCGAATGGGGACAGTTTCAGATCGATGGGCGATCTGCAAGAGGAGGTCAAGAGTCTGCAAATGACGCTTACGCCAGAGCAATTAACTCGGGAAGTAAGTCGGAAGCTCTTGGCATAATTAAAGAATTAGCCCCAAAAGACTTTGTTTTACATTTTCATAATATAAATTGTAATTTAGATAAGATTTTTGTAGAGCCACCGGCTCCTTATGTTTCTCCATTTCTTTCTTCTTCTTTCTCGAGAGTTCCGGTGGAACTTGATAATTGGGCGTCGGAAAATGTAAAGAGTTCCGCTGCGCGGCCATGGAGACCGATCAGTATTGTCATCGAAGGAGACAGTCGGACCGGGAAGACAATGTGGGCCCGGTCTTTGGGACCACACAATTATCTGTGTGGGCATCTCGATCTCAGCCCAAAGGTGTATTCCAATGATGCCTGGTATAACGTCATTGATGACGTCGATCCGCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAGCGTGACTGGCAAAGCAATACCAAGTACGGAAAGCCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCTGGACCAACGTCCTCCTATAAAGAATTCCTAGACGAGGAAAAGAATGCATCATTGAAAGCTTGGACAATTCCAAATGCAAAATTCGTCACCCTCTGGGAGCCACTGTACGACAGTGCCGATCAAAGTCAGGCACCGACTCGCGAAGAAGAAGGTAGTTCGACGTAG |
|
Protein Sequence
|
MRAPRFKIQAKNYFLTYPRCSLTKEHLLEQLRALSLPTNPKFIKICRELHQDGEPHLHVLLQFEGKLTCTNNRLFDCVHPSSSASFHPNIQGAKSSSDVKSYLDKDGDTLEWGQFQIDGRSARGGQESANDAYARAINSGSKSEALGIIKELAPKDFVLHFHNINCNLDKIFVEPPAPYVSPFLSSSFSRVPVELDNWASENVKSSAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNASLKAWTIPNAKFVTLWEPLYDSADQSQAPTREEEGSST |
|
NCBI Accession
|
YP_009256564.1
|
|
Location
|
2173-2463 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGGAACCGCATCTTCATGTGCTGTTGCAGTTCGAGGGCAAACTCACATGTACCAACAATCGCCTCTTCGATTGTGTACACCCAAGCAGTAGCGCCAGTTTCCACCCCAACATTCAGGGAGCTAAATCAAGCTCGGACGTCAAGTCGTACCTGGACAAAGACGGAGACACCCTCGAATGGGGACAGTTTCAGATCGATGGGCGATCTGCAAGAGGAGGTCAAGAGTCTGCAAATGACGCTTACGCCAGAGCAATTAACTCGGGAAGTAAGTCGGAAGCTCTTGGCATAA |
|
Protein Sequence
|
MGNRIFMCCCSSRANSHVPTIASSIVYTQAVAPVSTPTFRELNQARTSSRTWTKTETPSNGDSFRSMGDLQEEVKSLQMTLTPEQLTREVSRKLLA |