Cotton leaf curl Multan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000839845.1 |
| Isolate |
India: Rajasthan, Sriganganagar |
| Release date |
2015/2/12 |
| Submitter |
Radhakrishnan,G., Malathi,V.G., Varma,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTGGTGGGCCTTACCATTAACACTTGTCGGCCAATCATATGACTCCCTCAAAGCTAAATAACGCTCCCGCACACTATAAGTACTTGCGCACTAAGTTTCAAATTCAAACATGTGGGATCCACTATTAAACGAATTCCCTGATACGGTTCACGGGTTTCGGTGTATGCTTTCTGTGAAATATTTGCAACTTTTGTCGCAGGATTATTCACCGGATACGCTTGGGTACGAGTTAATACGGGATTTAATTTGTATTTTACGCTCCCGTAGTTATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCTAGAGGATGTGAAGGTCCATGTAAGGTTCAGTCGTTTGAGTCCAGACATGATATTCAGCATATAGGTAAAGTAATGTGTGTTAGTGATGTTACTCGTGGTACTGGGCTGACCCATAGAGTTGGTAAGAGATTTTGTGTCAAGTCTGTTTATGTGTTGGGTAAGATATGGATGGATGAGAACATTAAGACGAAGAATCACACGAATAGTGTGATGTTTTTCTTGGTTAGAGATCGTAGACCTGTTGATAAACCTCAAGATTTTGGAGAGGTATTTAATATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTGCGCAAATGGTATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCTTTGGTCAAGAAGTTTGTCAGAGTTAACAATTATGTTGTTTACAATCAACAGGAAGCAGGAAAATACGAGAATCATACGGAAAATGCGTTAATGCTTTATATGGCTTGTACTCACGCTAGCAACCCTGTTTATGCTACGTTGAAGATTAGGATATATTTTTATGACTCTGTAACGAATTGATATTAATAAAGTTTAAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGGATTACATTGTACAATACATGTTCTACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTCAGATATTTGAGGACTTGGTTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCAGTCCCAGAGCTTTCCGCGTGTTGTAGTTGAACTGGATCCTGATCGTGAGTATGTCCATATTCGTCGTGAATGGACGGTTGACGTGGCTGATGATCTTGAAATAAAGGGGATTTGGAACCTCCCAGATATATGCGCCATTCCCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATTGACAGATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCTGTTGCGCCTCTTCGCTTCCCTGTGCTGTACTTTGATTGGTACCTGAGTACATGGGTCTATCAAGTGTGATGAAGATCGCATTCTTTAAAGCCCAATTTTTTAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCTTTAGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGGCGTCATTACTGTATACCCTTGGGCTCAGATCTAGATGTCCACACAGATAATTATGTGGACCTAATGATCTGGCCCACATCGTCTTCCCCGTCCTACTGTCACCCTCAATCACTACACTTATTGGTCTATTGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCACACTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGCAGTACAAAATCCTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCCGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTGCTGACCTTCCGTCGATCTGAAATTGCCCCCAGTCGAGAATGTCCCCGTCCTTCTCGGTGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAAATTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATATATTTTTTTGAAGTTGGGGTTTGTATATTTAATAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAACATTTGGGATAAGTGATGAAATAGTTTTTGGAATAAATACCGTTCCGCTTTGGAGGCATGTTGACTAAAATTGATCACCGATTGACCGCTCTTGCAACTCTCCCCGGTATATCGGTGATCAATATATAGTGATCACCAAATGGCATAATGGTAATAAAAAAACTTTAATTTGAAATTCAAACCAAAAGGCTAAAGCGGCCATCCGTTTAATATT
Gene Information
|
NCBI Accession
|
NP_443740.1
|
|
Location
|
132-488 |
|
Gene Name
|
AV2 |
|
Protein Name
|
movement/pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTATTAAACGAATTCCCTGATACGGTTCACGGGTTTCGGTGTATGCTTTCTGTGAAATATTTGCAACTTTTGTCGCAGGATTATTCACCGGATACGCTTGGGTACGAGTTAATACGGGATTTAATTTGTATTTTACGCTCCCGTAGTTATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCTAG |
|
Protein Sequence
|
MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDLICILRSRSYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQEAQDVQDVQKSRCS |
|
NCBI Accession
|
NP_443741.1
|
|
Location
|
292-1062 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCTAGAGGATGTGAAGGTCCATGTAAGGTTCAGTCGTTTGAGTCCAGACATGATATTCAGCATATAGGTAAAGTAATGTGTGTTAGTGATGTTACTCGTGGTACTGGGCTGACCCATAGAGTTGGTAAGAGATTTTGTGTCAAGTCTGTTTATGTGTTGGGTAAGATATGGATGGATGAGAACATTAAGACGAAGAATCACACGAATAGTGTGATGTTTTTCTTGGTTAGAGATCGTAGACCTGTTGATAAACCTCAAGATTTTGGAGAGGTATTTAATATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTGCGCAAATGGTATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCTTTGGTCAAGAAGTTTGTCAGAGTTAACAATTATGTTGTTTACAATCAACAGGAAGCAGGAAAATACGAGAATCATACGGAAAATGCGTTAATGCTTTATATGGCTTGTACTCACGCTAGCAACCCTGTTTATGCTACGTTGAAGATTAGGATATATTTTTATGACTCTGTAACGAATTGA |
|
Protein Sequence
|
MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
NP_443742.1
|
|
Location
|
1065-1469 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGGGAATGGCGCATATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCATCAGCCACGTCAACCGTCCATTCACGACGAATATGGACATACTCACGATCAGGATCCAGTTCAACTACAACACGCGGAAAGCTCTGGGACTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAAACCAAGTCCTCAAATATCTGAACAATCTCGGTGTAATTTCAATTAATTTAGTTATTAAAGCTGTAGAACATGTATTGTACAATGTAATCCAACAAACTATGTATGTAGATCAATATTCAGAAATAAAATTTAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDILTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKNQVLKYLNNLGVISINLVIKAVEHVLYNVIQQTMYVDQYSEIKFKLY |
|
NCBI Accession
|
NP_443743.1
|
|
Location
|
1162-1614 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcription activator protein |
|
Coding Region
|
ATGCGATCTTCATCACACTTGATAGACCCATGTACTCAGGTACCAATCAAAGTACAGCACAGGGAAGCGAAGAGGCGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATCTGTCAATCAACTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGGGAATGGCGCATATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCATCAGCCACGTCAACCGTCCATTCACGACGAATATGGACATACTCACGATCAGGATCCAGTTCAACTACAACACGCGGAAAGCTCTGGGACTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAAACCAAGTCCTCAAATATCTGAACAATCTCGGTGTAATTTCAATTAA |
|
Protein Sequence
|
MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSINCHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQHAESSGTAQVFSNLPNLDDLTASDWSFLKGIQKPSPQISEQSRCNFN |
|
NCBI Accession
|
NP_443744.1
|
|
Location
|
1511-2599 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGCCTCCAAAGCGGAACGGTATTTATTCCAAAAACTATTTCATCACTTATCCCAAATGTTCTCTCACCAAAGAGGAAGCACTTTCCCAATTATTAAATATACAAACCCCAACTTCAAAAAAATATATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAATTTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACACCGAGAAGGACGGGGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCCAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAGGATTTTGTACTGCAATTTCATAATTTAAATGCAAATCTAGACAGAATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCCTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGTGTGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGGCCAATAGACCAATAAGTGTAGTGATTGAGGGTGACAGTAGGACGGGGAAGACGATGTGGGCCAGATCATTAGGTCCACATAATTATCTGTGTGGACATCTAGATCTGAGCCCAAGGGTATACAGTAATGACGCCTGGTTTAACGTCATTGATGACGTCAACCCACATTACCTAAAGCACTTTAAGGAGTTCATGGGGGCCCAAAAGGACTGGCAATCAAATACAAAATACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACCATCTTCCTCTGCAATCCAGGACCCAATTCTAGCTATAAAGAGTTTTTGGATGAAGAGAAGAATTCTGCACTAAAAAATTGGGCTTTAAAGAATGCGATCTTCATCACACTTGATAGACCCATGTACTCAGGTACCAATCAAAGTACAGCACAGGGAAGCGAAGAGGCGCAACAGGAGGAGGAGAGTAGATCTTGA |
|
Protein Sequence
|
MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRICRELHEDGTPHLHVLIQFEGNFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYTEKDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVNPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMYSGTNQSTAQGSEEAQQEEESRS |
|
NCBI Accession
|
NP_443745.1
|
|
Location
|
2143-2445 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAATTTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACACCGAGAAGGACGGGGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCCAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAG |
|
Protein Sequence
|
MGLLTCMFSSSSKGISSARICDSSTWSPQAGQHISIRTYRELNPAPTSNPTPRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN |