Cotton leaf curl Gezira virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000838805.1 |
| Isolate |
Egypt: Aswan |
| Release date |
2015/2/12 |
| Submitter |
Bigarre,L., Chazly,M., Salah,M., Ibrahim,M., Padidam,M., Nicole,M., Peterschmitt,M., Fauquet,C., Thouvenel,J.C., Thouvenel,J. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGTGGGCGCGAAAAAAAAAAGTGGTCCCCGCCCCACGTGAACATGTCGCGCGAGTGCTGAACATGTCGCGCGATGATGTCCAATCAGAACGCGCGCTCTACGCATTATAATTTGAAATTTGAAATATAAACTTGCTCCCTAAGTTTGTCCGGCATAACTATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTCCACTCTTGGGTACGATCTTCTTAGCGATCTCATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGTCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAACGCCGGGCGTGGTCCAACAGACCCAATTACAGGAAGCCCAGAATGTACAGAATGTATCGGAGCCCAGATGTCCCAAAGGGGTGTGAAGGTCCATGTAAGGTCCAGTCATATGAACAGCGTGATGATGTGAAGCATACTGGTATTGTTCGCTGTGTTTCTGATGTGACTAAGGGAACTGGGCTTACTCATCGTACTGGAAAGCGTTTCACAATCAAATCCATTTATATTCTTGGTAAGGTATGGATGGATGAGAACATTAAGAAGCAGAATCACACCAACAATGTGATGTTTTTCCTTGTTCGTGATAGAAGACCTTATGGGAATTCCCCGATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAGCCCAGTACTGCTACTATAAAGAATGATTATCGAGATCGTTTCCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGTCCTTCTGGGATGAAGGAACAGGCTCTTGTTCGTAGGTTTTTTAAGATTAACAGTCAGATTGTGTATAACCATCAGGAAGCTGCGAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCTACGTTAAAGATACGGATCTACTTCTACGATTCGGTATCTAATTAATACAATTTTATTTGAATATTGTGAGTGAATTCACTTGCCACTGTTGTTTGCAATACATCGTACAAAACATGATTGACTGCCCTAATTATATTGTTAATTGAAATTACGCCTATTCTATACAAATATTTCATAATCTGCTTCCTAAATACGTTTAAGAAAAGACCAGTCGGAGGGCGTGAGATCGTCCAGACCCTGAAGTTCATGAAACATTTGTGAATCCCCAATTCCTTCCTGAGGTTGTAGTTGAATCTTATCTGCATCTCTACCATTGTTTGATTCCCGTGCGTTAGACGAATCTCCTTTATGGTTTTGAAATACAGGGGATTGTTGATTGTCCAGATAAGTACGCCATTCTCTGTCTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTCTCTGCACGTGAAGGCTACGTATACCGTGCAACCACAAGGGATGTCAATCCTGCGTCTCCTGATTGCTCTCTTCTTGGCCTCCCGATGCTGGACTTTGATTGGTACCTGAGTACAGCGGATTTGAGAGGGTGATGAAGGTCGCATTCTTTAATGCCCAGGATTTGAGATGCGCGTTCTTGTCCTCGTCTAAATACTCTTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTCCTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGGGCTCAGATCAAGATGACCGCACAGATAATTGTGAGGCCCAAGACTTCTGGCCCATACGGTCTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGCGGCCTCAACGACGTTCTCCGCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACGAAGAAGACAAAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTCTCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTAACTCCCTTATAACCCTAAGAGCCTCTGCCTTACTTCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCGGTCTGTTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTCTGATTTTGGCACTTGAACTTCCCTTCGAACTGGAGAAGCACATGTAGATGAGGTTGGCCATCCTCGTGAAGCTCTCTGCAGATCTTGATATATTTCTTGTTTGAAGCTGTGCTTATTTTCTGTATTTGCTCTAGGGCTTCCTCTTTTGTTAGAGAACATTTTGGGAAAGTTAGGAAATAATTCTTGGCATATATTTGGAATCTGTGGGGAGGAGCCATTGACTTGGTCAATCGGTACTCAGATGCTTCTCTCCAATATATCGGTACTCAATATATAGTGAGTACCAAATGGCATTTTGGTAAAAATCCCAATAATTTTGAACCCCCATAGCGCCCACCGTTCTAATATT
Gene Information
|
NCBI Accession
|
NP_062867.1
|
|
Location
|
163-531 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTCCACTCTTGGGTACGATCTTCTTAGCGATCTCATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGTCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAACGCCGGGCGTGGTCCAACAGACCCAATTACAGGAAGCCCAGAATGTACAGAATGTATCGGAGCCCAGATGTCCCAAAGGGGTGTGA |
|
Protein Sequence
|
MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDLIGVVRRTNYVEATSRYHHFHSRLESASPSELRQSRVILCTCPHCPRHKQTPGVVQQTQLQEAQNVQNVSEPRCPKGV |
|
NCBI Accession
|
NP_062868.1
|
|
Location
|
323-1099 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGTCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAACGCCGGGCGTGGTCCAACAGACCCAATTACAGGAAGCCCAGAATGTACAGAATGTATCGGAGCCCAGATGTCCCAAAGGGGTGTGAAGGTCCATGTAAGGTCCAGTCATATGAACAGCGTGATGATGTGAAGCATACTGGTATTGTTCGCTGTGTTTCTGATGTGACTAAGGGAACTGGGCTTACTCATCGTACTGGAAAGCGTTTCACAATCAAATCCATTTATATTCTTGGTAAGGTATGGATGGATGAGAACATTAAGAAGCAGAATCACACCAACAATGTGATGTTTTTCCTTGTTCGTGATAGAAGACCTTATGGGAATTCCCCGATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAGCCCAGTACTGCTACTATAAAGAATGATTATCGAGATCGTTTCCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGTCCTTCTGGGATGAAGGAACAGGCTCTTGTTCGTAGGTTTTTTAAGATTAACAGTCAGATTGTGTATAACCATCAGGAAGCTGCGAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCTACGTTAAAGATACGGATCTACTTCTACGATTCGGTATCTAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAWSNRPNYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTHRTGKRFTIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATIKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSQIVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
NP_062869.1
|
|
Location
|
1096-1497 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCGTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAGGAAGCAGATTATGAAATATTTGTATAGAATAGGCGTAATTTCAATTAACAATATAATTAGGGCAGTCAATCATGTTTTGTACGATGTATTGCAAACAACAGTGGCAAGTGAATTCACTCACAATATTCAAATAAAATTGTATTAA |
|
Protein Sequence
|
MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIRLTHGNQTMVEMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNIIRAVNHVLYDVLQTTVASEFTHNIQIKLY |
|
NCBI Accession
|
NP_062870.1
|
|
Location
|
1241-1645 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTCCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGACATCCCTTGTGGTTGCACGGTATACGTAGCCTTCACGTGCAGAGACAATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCGTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAG |
|
Protein Sequence
|
MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAFTCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQPQEGIGDSQMFHELQGLDDLTPSDWSFLKRI |
|
NCBI Accession
|
NP_062871.1
|
|
Location
|
1545-2633 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGGCTCCTCCCCACAGATTCCAAATATATGCCAAGAATTATTTCCTAACTTTCCCAAAATGTTCTCTAACAAAAGAGGAAGCCCTAGAGCAAATACAGAAAATAAGCACAGCTTCAAACAAGAAATATATCAAGATCTGCAGAGAGCTTCACGAGGATGGCCAACCTCATCTACATGTGCTTCTCCAGTTCGAAGGGAAGTTCAAGTGCCAAAATCAGAGACTCTTCGACCTGGTCTCCCCAAATAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGATCTGCAAGAGGAGGACAACAGACCGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATAAGGGAGTTAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGAGAGGATTTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCTTTTTTGTCTTCTTCGTTCGACCAAGTTCCAGAAGAACTTGAAGAATGGGCGGCGGAGAACGTCGTTGAGGCCGCTGCGCGGCCAAGTAGACCGATTAGTATAGTGATTGAAGGGGAAAGCAGAACAGGAAAGACCGTATGGGCCAGAAGTCTTGGGCCTCACAATTATCTGTGCGGTCATCTTGATCTGAGCCCAAAGGTGTTCAGTAATGACGCATGGTATAACGTCATAGATGATGTTGACCCGCATTATCTGAAACACTTTAAGGAGTTCATGGGGGCACAAAAGGACTGGCAAAGCAACACAAAATACGGGAAACCAGTTCAAATTAAAGGGGGCATCCCAACAATCTTCCTCTGCAATCCAGGTCCCAATTCCTCTTATAAAGAGTATTTAGACGAGGACAAGAACGCGCATCTCAAATCCTGGGCATTAAAGAATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTCCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGA |
|
Protein Sequence
|
MAPPHRFQIYAKNYFLTFPKCSLTKEEALEQIQKISTASNKKYIKICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFHNLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPSRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEDKNAHLKSWALKNATFITLSNPLYSGTNQSPASGGQEESNQETQD |
|
NCBI Accession
|
NP_062872.1
|
|
Location
|
2183-2476 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGCCAACCTCATCTACATGTGCTTCTCCAGTTCGAAGGGAAGTTCAAGTGCCAAAATCAGAGACTCTTCGACCTGGTCTCCCCAAATAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGATCTGCAAGAGGAGGACAACAGACCGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATAA |
|
Protein Sequence
|
MANLIYMCFSSSKGSSSAKIRDSSTWSPQIGQHISIQTFRELNPAPTSSPTSTRMETHWNGENSRSTEDLQEEDNRPPMTLTPQRLTQEVRQRLLGL |