Cotton leaf curl Gezira virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838805.1
Isolate Egypt: Aswan
Release date 2015/2/12
Submitter Bigarre,L., Chazly,M., Salah,M., Ibrahim,M., Padidam,M., Nicole,M., Peterschmitt,M., Fauquet,C., Thouvenel,J.C., Thouvenel,J.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_002510
ACCGGTGGGCGCGAAAAAAAAAAGTGGTCCCCGCCCCACGTGAACATGTCGCGCGAGTGCTGAACATGTCGCGCGATGATGTCCAATCAGAACGCGCGCTCTACGCATTATAATTTGAAATTTGAAATATAAACTTGCTCCCTAAGTTTGTCCGGCATAACTATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTCCACTCTTGGGTACGATCTTCTTAGCGATCTCATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGTCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAACGCCGGGCGTGGTCCAACAGACCCAATTACAGGAAGCCCAGAATGTACAGAATGTATCGGAGCCCAGATGTCCCAAAGGGGTGTGAAGGTCCATGTAAGGTCCAGTCATATGAACAGCGTGATGATGTGAAGCATACTGGTATTGTTCGCTGTGTTTCTGATGTGACTAAGGGAACTGGGCTTACTCATCGTACTGGAAAGCGTTTCACAATCAAATCCATTTATATTCTTGGTAAGGTATGGATGGATGAGAACATTAAGAAGCAGAATCACACCAACAATGTGATGTTTTTCCTTGTTCGTGATAGAAGACCTTATGGGAATTCCCCGATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAGCCCAGTACTGCTACTATAAAGAATGATTATCGAGATCGTTTCCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGTCCTTCTGGGATGAAGGAACAGGCTCTTGTTCGTAGGTTTTTTAAGATTAACAGTCAGATTGTGTATAACCATCAGGAAGCTGCGAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCTACGTTAAAGATACGGATCTACTTCTACGATTCGGTATCTAATTAATACAATTTTATTTGAATATTGTGAGTGAATTCACTTGCCACTGTTGTTTGCAATACATCGTACAAAACATGATTGACTGCCCTAATTATATTGTTAATTGAAATTACGCCTATTCTATACAAATATTTCATAATCTGCTTCCTAAATACGTTTAAGAAAAGACCAGTCGGAGGGCGTGAGATCGTCCAGACCCTGAAGTTCATGAAACATTTGTGAATCCCCAATTCCTTCCTGAGGTTGTAGTTGAATCTTATCTGCATCTCTACCATTGTTTGATTCCCGTGCGTTAGACGAATCTCCTTTATGGTTTTGAAATACAGGGGATTGTTGATTGTCCAGATAAGTACGCCATTCTCTGTCTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTCTCTGCACGTGAAGGCTACGTATACCGTGCAACCACAAGGGATGTCAATCCTGCGTCTCCTGATTGCTCTCTTCTTGGCCTCCCGATGCTGGACTTTGATTGGTACCTGAGTACAGCGGATTTGAGAGGGTGATGAAGGTCGCATTCTTTAATGCCCAGGATTTGAGATGCGCGTTCTTGTCCTCGTCTAAATACTCTTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTCCTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGGGCTCAGATCAAGATGACCGCACAGATAATTGTGAGGCCCAAGACTTCTGGCCCATACGGTCTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGCGGCCTCAACGACGTTCTCCGCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACGAAGAAGACAAAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTCTCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTAACTCCCTTATAACCCTAAGAGCCTCTGCCTTACTTCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCGGTCTGTTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTCTGATTTTGGCACTTGAACTTCCCTTCGAACTGGAGAAGCACATGTAGATGAGGTTGGCCATCCTCGTGAAGCTCTCTGCAGATCTTGATATATTTCTTGTTTGAAGCTGTGCTTATTTTCTGTATTTGCTCTAGGGCTTCCTCTTTTGTTAGAGAACATTTTGGGAAAGTTAGGAAATAATTCTTGGCATATATTTGGAATCTGTGGGGAGGAGCCATTGACTTGGTCAATCGGTACTCAGATGCTTCTCTCCAATATATCGGTACTCAATATATAGTGAGTACCAAATGGCATTTTGGTAAAAATCCCAATAATTTTGAACCCCCATAGCGCCCACCGTTCTAATATT

Gene Information

NCBI Accession NP_062867.1
Location 163-531
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTCCACTCTTGGGTACGATCTTCTTAGCGATCTCATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGTCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAACGCCGGGCGTGGTCCAACAGACCCAATTACAGGAAGCCCAGAATGTACAGAATGTATCGGAGCCCAGATGTCCCAAAGGGGTGTGA
Protein Sequence MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDLIGVVRRTNYVEATSRYHHFHSRLESASPSELRQSRVILCTCPHCPRHKQTPGVVQQTQLQEAQNVQNVSEPRCPKGV

NCBI Accession NP_062868.1
Location 323-1099
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGTCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAACGCCGGGCGTGGTCCAACAGACCCAATTACAGGAAGCCCAGAATGTACAGAATGTATCGGAGCCCAGATGTCCCAAAGGGGTGTGAAGGTCCATGTAAGGTCCAGTCATATGAACAGCGTGATGATGTGAAGCATACTGGTATTGTTCGCTGTGTTTCTGATGTGACTAAGGGAACTGGGCTTACTCATCGTACTGGAAAGCGTTTCACAATCAAATCCATTTATATTCTTGGTAAGGTATGGATGGATGAGAACATTAAGAAGCAGAATCACACCAACAATGTGATGTTTTTCCTTGTTCGTGATAGAAGACCTTATGGGAATTCCCCGATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAGCCCAGTACTGCTACTATAAAGAATGATTATCGAGATCGTTTCCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGTCCTTCTGGGATGAAGGAACAGGCTCTTGTTCGTAGGTTTTTTAAGATTAACAGTCAGATTGTGTATAACCATCAGGAAGCTGCGAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCTACGTTAAAGATACGGATCTACTTCTACGATTCGGTATCTAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAWSNRPNYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTHRTGKRFTIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATIKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSQIVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession NP_062869.1
Location 1096-1497
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCGTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAGGAAGCAGATTATGAAATATTTGTATAGAATAGGCGTAATTTCAATTAACAATATAATTAGGGCAGTCAATCATGTTTTGTACGATGTATTGCAAACAACAGTGGCAAGTGAATTCACTCACAATATTCAAATAAAATTGTATTAA
Protein Sequence MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIRLTHGNQTMVEMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNIIRAVNHVLYDVLQTTVASEFTHNIQIKLY

NCBI Accession NP_062870.1
Location 1241-1645
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTCCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGACATCCCTTGTGGTTGCACGGTATACGTAGCCTTCACGTGCAGAGACAATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCGTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAG
Protein Sequence MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAFTCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQPQEGIGDSQMFHELQGLDDLTPSDWSFLKRI

NCBI Accession NP_062871.1
Location 1545-2633
Gene Name AC1
Protein Name Rep
Coding Region ATGGCTCCTCCCCACAGATTCCAAATATATGCCAAGAATTATTTCCTAACTTTCCCAAAATGTTCTCTAACAAAAGAGGAAGCCCTAGAGCAAATACAGAAAATAAGCACAGCTTCAAACAAGAAATATATCAAGATCTGCAGAGAGCTTCACGAGGATGGCCAACCTCATCTACATGTGCTTCTCCAGTTCGAAGGGAAGTTCAAGTGCCAAAATCAGAGACTCTTCGACCTGGTCTCCCCAAATAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGATCTGCAAGAGGAGGACAACAGACCGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATAAGGGAGTTAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGAGAGGATTTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCTTTTTTGTCTTCTTCGTTCGACCAAGTTCCAGAAGAACTTGAAGAATGGGCGGCGGAGAACGTCGTTGAGGCCGCTGCGCGGCCAAGTAGACCGATTAGTATAGTGATTGAAGGGGAAAGCAGAACAGGAAAGACCGTATGGGCCAGAAGTCTTGGGCCTCACAATTATCTGTGCGGTCATCTTGATCTGAGCCCAAAGGTGTTCAGTAATGACGCATGGTATAACGTCATAGATGATGTTGACCCGCATTATCTGAAACACTTTAAGGAGTTCATGGGGGCACAAAAGGACTGGCAAAGCAACACAAAATACGGGAAACCAGTTCAAATTAAAGGGGGCATCCCAACAATCTTCCTCTGCAATCCAGGTCCCAATTCCTCTTATAAAGAGTATTTAGACGAGGACAAGAACGCGCATCTCAAATCCTGGGCATTAAAGAATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTCCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGA
Protein Sequence MAPPHRFQIYAKNYFLTFPKCSLTKEEALEQIQKISTASNKKYIKICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFHNLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPSRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEDKNAHLKSWALKNATFITLSNPLYSGTNQSPASGGQEESNQETQD

NCBI Accession NP_062872.1
Location 2183-2476
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGCCAACCTCATCTACATGTGCTTCTCCAGTTCGAAGGGAAGTTCAAGTGCCAAAATCAGAGACTCTTCGACCTGGTCTCCCCAAATAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGATCTGCAAGAGGAGGACAACAGACCGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATAA
Protein Sequence MANLIYMCFSSSKGSSSAKIRDSSTWSPQIGQHISIQTFRELNPAPTSSPTSTRMETHWNGENSRSTEDLQEEDNRPPMTLTPQRLTQEVRQRLLGL

References More References in PubMed

1

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467
2

Cotton leaf curl Gezira virus-satellite DNAs represent a divergent, geographically isolated Nile Basin lineage: predictive identification of a satDNA REP-binding motif.

Idris AM, et al.  Virus Res. 2005 Apr;109(1):19-32. doi: 10.1016/j.virusres.2004.10.002. Epub 2004 Nov 23.

PMID: 15826909
3

Identification and molecular characterization of cotton leaf curl Gezira betasatellite and two distinct begomoviruses infecting papaya trees in the Kingdom of Saudi Arabia.

Hussain K, et al.  Cell Mol Biol (Noisy-le-grand). 2022 Sep 30;68(9):129-134. doi: 10.14715/cmb/2022.68.9.20.

PMID: 36905263
4

Cotton leaf curl Gezira alphasatellite associated with tomato leaf curl Sudan virus approaches the expected upper size limit in the evolution of alphasatellites.

Fiallo-Olivé E, et al.  Virus Res. 2013 Dec 26;178(2):506-10. doi: 10.1016/j.virusres.2013.10.006. Epub 2013 Oct 16.

PMID: 24140627
5

Molecular diversity of cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso.

Tiendrébéogo F, et al.  Virol J. 2010 Feb 23;7:48. doi: 10.1186/1743-422X-7-48.

PMID: 20178575
6

Introduction of Cotton leaf curl Gezira virus into the United Arab Emirates.

Idris A, et al.  Plant Dis. 2014 Nov;98(11):1593. doi: 10.1094/PDIS-08-14-0838-PDN.

PMID: 30699838
7

Identification of a New, Monopartite Begomovirus Associated with Leaf Curl Disease of Cotton in Gezira, Sudan.

Idris AM, et al.  Plant Dis. 2000 Jul;84(7):809. doi: 10.1094/PDIS.2000.84.7.809C.

PMID: 30832125
8

Molecular analysis of Cotton leaf curl virus-Sudan reveals an evolutionary history of recombination.

Idris AM, et al.  Virus Genes. 2002 Jun;24(3):249-56. doi: 10.1023/a:1015380600089.

PMID: 12086146
9

Complete nucleotide sequences of okra isolates of Cotton leaf curl Gezira virus and their associated DNA-beta from Niger.

Shih SL, et al.  Arch Virol. 2009;154(2):369-72. doi: 10.1007/s00705-008-0304-6. Epub 2009 Jan 21.

PMID: 19156351
10

Accumulation and transmission of alphasatellite, betasatellite and tomato yellow leaf curl virus in susceptible and Ty-1-resistant tomato plants.

Conflon D, et al.  Virus Res. 2018 Jul 15;253:124-134. doi: 10.1016/j.virusres.2018.06.003. Epub 2018 Jun 15.

PMID: 29908896