Cotton leaf curl Barasat virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAAATTTTTTGGTGGTCCCTCGACCAATCATATGATGCGCTCAAAGCTTAATAACGCTCCCGCCCACTATAAGTACTTCGGCCCTAAGTTTCAATTTAAAAAATGTGGGATCCACTTGTAAACGAGTTCCCCGAGACGGTTCACGGTTTTCGGTGCATGCTTGCCATCAAATACCTTCAATTACTCTCTGAAGGATACTCTCCTGATACGGTGGGTTACGATTTAATACGAGATCTAATCTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAAGGTCCATGTAAGGTACAGTCATTTGAGTCTAGACACGATGTCGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACGCGTGGAACTGGGCTGACCCATCGAGTAGGTAAAAGGTTTTGTGTTAAATCTGTTTATGTCTTGGGTAAGATCTGGATGGATGAGAACATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTCGATAAACCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAACCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTCCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTATTTCTATGACTCTGTAACGAATTGATATTAATAAAGATTGAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGTATTACATTGTACAATACATGTTCGACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTGAGATATTTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCCGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAACTGGATCCTGATTGTTATTATGTCCGTGTTCATCGTGAATGGACGGTTGTCGTGGCTGAGGATCTTGAAATAGAGGGGATTTGGAACCTTCCAGATATAGGCGCCACTCCTTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTAAATCCATGGTTGAAGCAGTTTAGAGATAGAAAATAAGAACACCCGCATTCAAGATCGACTCTCCTCCTCCTGTTGCGTCTCTTCGCTTCCCTGTGCTTCACTTTGATTGGAACCTGAGTACAGTGGTCCTTCGAGGGTGATGAAGATCGCATTCTTGAGAGCCCAGTTCTTTAATGCGGTGTTTTTTTCCTCGTTGAGGAATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCAATGACGTTGAACCAGGCTTCGTTACTGTAGACCTTGGGGCTTAAATCTAGGTGTCCACACAGATAGTTATGTGGGCCTAGTGATCTGGCCCACATTGTCTTCCCTGTACGACTGTCTCCCTCAATTACTATACTTTGAGGTCTGTGTGGCCGCGCACCGGCATCGACGACGTTCTCTGACGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGCAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCATTTGCTGTCTGTTGCCCTCCTCTTGCTGACCTTCCGTCGATCTGAAATTGCCCCCAGTCGAGAATGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCATGAAGCTCTCTGCAGATTTTAATATATTTTTTTGAAGTTGGGGTTTGGAGATTTAATAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAACATTTGGGATAAGTGATGAAATAATTTTTGGAATAAATACCGTTCCGCTTTGGAGGCATGTTGACTAAAATTGATCACCGATTGACCGCTCTTGCAACTCTCCCCGGTATATCGGTGATCAATATATAGTGATCACCAAATGGCATAATGGTAATAAAAAAACTTTAATTTGAAATTCAAACCAAAAGGCTAAAGCGGCCATCCGTTTAATATT
Gene Information
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NCBI Accession
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BAU61800.1
|
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Location
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117-464 |
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Gene Name
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AV2 |
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Protein Name
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Av2 protein |
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Coding Region
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ATGTGGGATCCACTTGTAAACGAGTTCCCCGAGACGGTTCACGGTTTTCGGTGCATGCTTGCCATCAAATACCTTCAATTACTCTCTGAAGGATACTCTCCTGATACGGTGGGTTACGATTTAATACGAGATCTAATCTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
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Protein Sequence
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MWDPLVNEFPETVHGFRCMLAIKYLQLLSEGYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASASELRQPVLNPCCCPHCPRHKIPNVGEQAHESQAQNVQDVQKP |
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NCBI Accession
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BAU61801.1
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Location
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277-1047 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAAGGTCCATGTAAGGTACAGTCATTTGAGTCTAGACACGATGTCGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACGCGTGGAACTGGGCTGACCCATCGAGTAGGTAAAAGGTTTTGTGTTAAATCTGTTTATGTCTTGGGTAAGATCTGGATGGATGAGAACATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTCGATAAACCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAACCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTCCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTATTTCTATGACTCTGTAACGAATTGA |
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Protein Sequence
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MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
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NCBI Accession
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BAU61802.1
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Location
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1050-1454 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAGTGGCGCCTATATCTGGAAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACACGGACATAATAACAATCAGGATCCAGTTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACACCCTCGGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAATATCTCAACAATCTCGGTGTAATTTCAATTAATTTAGTTATTAAAGCTGTCGAACATGTATTGTACAATGTAATACAACAAACTATGTATGTAGATCAATATTCAGAAATAAAATTCAATCTTTATTAA |
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Protein Sequence
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MDLRTGEPITAAQARSGAYIWKVPNPLYFKILSHDNRPFTMNTDIITIRIQFNYNLRKALGVHKCFLTFRIWTTLHPRTGLFLRVFKTQVLKYLNNLGVISINLVIKAVEHVLYNVIQQTMYVDQYSEIKFNLY |
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NCBI Accession
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BAU61803.1
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Location
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1147-1599 |
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Gene Name
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AC2 |
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Protein Name
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trans-activator protein |
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Coding Region
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ATGCGATCTTCATCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTGAAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTCGATCTTGAATGCGGGTGTTCTTATTTTCTATCTCTAAACTGCTTCAACCATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAGTGGCGCCTATATCTGGAAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACACGGACATAATAACAATCAGGATCCAGTTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACACCCTCGGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAATATCTCAACAATCTCGGTGTAATTTCAATTAA |
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Protein Sequence
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MRSSSPSKDHCTQVPIKVKHREAKRRNRRRRVDLECGCSYFLSLNCFNHGFTHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNNQDPVQLQPSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNFN |
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NCBI Accession
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BAU61804.1
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Location
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1496-2584 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGCCTCCAAAGCGGAACGGTATTTATTCCAAAAATTATTTCATCACTTATCCCAAATGTTCTCTCACCAAAGAGGAAGCACTTTCCCAATTATTAAATCTCCAAACCCCAACTTCAAAAAAATATATTAAAATCTGCAGAGAGCTTCATGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAAATTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCAAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTGCAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCCTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGTCAGAGAACGTCGTCGATGCCGGTGCGCGGCCACACAGACCTCAAAGTATAGTAATTGAGGGAGACAGTCGTACAGGGAAGACAATGTGGGCCAGATCACTAGGCCCACATAACTATCTGTGTGGACACCTAGATTTAAGCCCCAAGGTCTACAGTAACGAAGCCTGGTTCAACGTCATTGATGACGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACTAAATACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCTGGTCCCAACAGCAGTTATAAAGAATTCCTCAACGAGGAAAAAAACACCGCATTAAAGAACTGGGCTCTCAAGAATGCGATCTTCATCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTGAAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTCGATCTTGA |
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Protein Sequence
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MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNLQTPTSKKYIKICRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWASENVVDAGARPHRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWFNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPLYSGSNQSEAQGSEETQQEEESRS |
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NCBI Accession
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BAU61805.1
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Location
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2128-2430 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAAATTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCAAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG |
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Protein Sequence
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MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPAPTSSPTSTRTETFSTGGNFRSTEGQQEEGNRQQMTLTPQHLTREVSQRLLESLRN |