Cotton leaf curl Bangalore virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000865045.1 |
| Isolate | India |
| Release date | 2015/2/13 |
| Submitter | Chowda Reddy,R.V., Muniyappa,V., Colvin,J., Seal,S. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_007290
ACCGGATGGCCGCGCGATTTTTTTGTGGGTCCCGCCACTAACACTTGTCTGCCAATCACATGGCGCGCTCAAAGCTTAAATAATTTCCCGCTTATTATAAGTACTTCGTCCCTAAGTTTCTGTTTGAAAAATGTGGGATCCACTGTTAAACGAGTTCCCCGAGACGGAACACGGGTTTCGTTGCGTGCTTGCTATCAAATATCTTCAACAATTGTCTGAAGAATACTCCCCTGATACGCTAGGTTACGATTTAATCCGCGATTTAATGTCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCGTTTGAGTCTAGACACGATGTAGTCCATATAGGTAAGGTCATGTGCATTAGTGATGTTACACGTGGTACTGGGTTAACCCATAGAGTTGGTAAGCGTTTTTGTGTGAAGTCTGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATTTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGATTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGTACTGCTACGGTGAAGAATATGCATAGAGATCGTTATCAGGTGCTGAGGAAGTGGCATGCAACTGTTACTGGTGGACAGTACGCCTCAAAGGAACAGGCATTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAACTATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACCCATGCCTCAAATCCTGTATACGCTACGCTTAAGATCCGTATTTATTTCTATGATTCCGTAACCAATTGATATTAATAAAGATCGAATTTTATTTCTGAAGTTTGGTCTACAAACATGGTGTTTTCTATTTTCTTGTACAATACATGATCAACTGCTCTAATAATTGAATTAATTGAGATTACACCTAGATTGTTGAGGTACTTGAGGACCTGTGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAATTGAATTGGATTCTGATCGTTATTATGTCCATGTTGTTTGTGAATGGCCGGTTGGGGAGGCTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCGAGATATAGACGCCACTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATAGACAAATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCTGTTGCGTCTCTTCGCTTCCCTGTGCTGAACTTTGATTGGTACCTGAGTACAATGGTCCTTCAAGGGTGATGAAGATCGCATTCTTTACTGCCCAGTTCTTTAGTGCTGTGTTCTTTTCCTCGTCGAGAAATTCTTTATAACTGCTGTTGGGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTGGGACTCAGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCTCCCTCAATTACTATACTTCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAAAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGGAGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGTAAGAGAGCAATTTGGATAAGTGAGGAAATAATTTTTGGAATTAATAAGAAAACGTTTCGGATGCATGTTGACCAAATAGAGGACCCGATTGACCAGCTCTTACAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGAGACCCAAATGGCATTGTCGTAATTTTGGAATGAAAATCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_277435.1 |
|---|---|
| Location | 131-478 |
| Gene Name | AV2 |
| Protein Name | CP expression activator |
| Coding Region | ATGTGGGATCCACTGTTAAACGAGTTCCCCGAGACGGAACACGGGTTTCGTTGCGTGCTTGCTATCAAATATCTTCAACAATTGTCTGAAGAATACTCCCCTGATACGCTAGGTTACGATTTAATCCGCGATTTAATGTCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGA |
| Protein Sequence | MWDPLLNEFPETEHGFRCVLAIKYLQQLSEEYSPDTLGYDLIRDLMSILRSRNYVEASCRYRHFYPRVEGASASELRQPLCNPCSCPHCPRHKISHVGEQAHEPQAQNVQDVQKP |
| NCBI Accession | YP_277436.1 |
|---|---|
| Location | 291-1061 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCGTTTGAGTCTAGACACGATGTAGTCCATATAGGTAAGGTCATGTGCATTAGTGATGTTACACGTGGTACTGGGTTAACCCATAGAGTTGGTAAGCGTTTTTGTGTGAAGTCTGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATTTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGATTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGTACTGCTACGGTGAAGAATATGCATAGAGATCGTTATCAGGTGCTGAGGAAGTGGCATGCAACTGTTACTGGTGGACAGTACGCCTCAAAGGAACAGGCATTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAACTATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACCCATGCCTCAAATCCTGTATACGCTACGCTTAAGATCCGTATTTATTTCTATGATTCCGTAACCAATTGA |
| Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRMWANRPMNRKPRMYRMYRSLDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGNYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | YP_277437.1 |
|---|---|
| Location | 1064-1468 |
| Gene Name | AC3 |
| Protein Name | replication enhancer |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGTCTATATCTCGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAGCCTCCCCAACCGGCCATTCACAAACAACATGGACATAATAACGATCAGAATCCAATTCAATTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACACAGGTCCTCAAGTACCTCAACAATCTAGGTGTAATCTCAATTAATTCAATTATTAGAGCAGTTGATCATGTATTGTACAAGAAAATAGAAAACACCATGTTTGTAGACCAAACTTCAGAAATAAAATTCGATCTTTATTAA |
| Protein Sequence | MDSRTGEPITAAQAWSGVYISEVPNPLYFKILSLPNRPFTNNMDIITIRIQFNYNLRRALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINSIIRAVDHVLYKKIENTMFVDQTSEIKFDLY |
| NCBI Accession | YP_277438.1 |
|---|---|
| Location | 1161-1613 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator |
| Coding Region | ATGCGATCTTCATCACCCTTGAAGGACCATTGTACTCAGGTACCAATCAAAGTTCAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATTTGTCTATCAACTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGTCTATATCTCGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAGCCTCCCCAACCGGCCATTCACAAACAACATGGACATAATAACGATCAGAATCCAATTCAATTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACACAGGTCCTCAAGTACCTCAACAATCTAGGTGTAATCTCAATTAA |
| Protein Sequence | MRSSSPLKDHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSINCHNHGFTHRGTHHCSSSMEWRLYLGSSKSPIFQDPKPPQPAIHKQHGHNNDQNPIQLQPSESSGSAQVFSDLPNLDDLTPSDWSFLKGIQNTGPQVPQQSRCNLN |
| NCBI Accession | YP_277439.1 |
|---|---|
| Location | 1510-2598 |
| Gene Name | AC1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGCATCCGAAACGTTTTCTTATTAATTCCAAAAATTATTTCCTCACTTATCCAAATTGCTCTCTTACAAAAGAAGAAGCACTTTCCCAACTTCAAAACCTACAAACTCCTACAAATAAAAAATTCATCAAGATCTGCAGAGAGCTCCATGAAAATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAAGGGAAGTACAAGTGCCAAAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGAGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTTTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGTTTGGGCCATCGATAACGTTGTCGATGCCGCTGCGCGGCCCCTTAGACCTCGAAGTATAGTAATTGAGGGAGATAGTCGAACGGGGAAGACGATGTGGGCCAGATCACTGGGACCACATAACTATTTATGCGGACATCTGGACCTGAGTCCCAAGGTCTACAATAACGACGCCTGGTATAACGTCATTGATGACGTCGATCCGCATTTCCTCAAGCACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCAGGTCCCAACAGCAGTTATAAAGAATTTCTCGACGAGGAAAAGAACACAGCACTAAAGAACTGGGCAGTAAAGAATGCGATCTTCATCACCCTTGAAGGACCATTGTACTCAGGTACCAATCAAAGTTCAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTAGATCTTGA |
| Protein Sequence | MHPKRFLINSKNYFLTYPNCSLTKEEALSQLQNLQTPTNKKFIKICRELHENGEPHIHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLEGPLYSGTNQSSAQGSEETQQEEESRS |
| NCBI Accession | YP_277440.1 |
|---|---|
| Location | 2142-2444 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAAGGGAAGTACAAGTGCCAAAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGAGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG |
| Protein Sequence | MGNLIFTCSSSSKGSTSAKIRDSSTWYPQPGQHISIRTFRELNQAQMSRTTSTRTETLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN |
References More References in PubMed
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| 3 |
Biochemical characterization of C4 protein of Cotton leaf curl Kokhran Virus-Dabawali. Guha D, et al. Biochim Biophys Acta. 2013 Jun;1830(6):3734-44. doi: 10.1016/j.bbagen.2013.02.026. Epub 2013 Mar 14. PMID: 23500017 |
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| 8 |
Suppressors of RNA silencing encoded by tomato leaf curl betasatellites. Shukla R, et al. J Biosci. 2013 Mar;38(1):45-51. doi: 10.1007/s12038-012-9291-6. PMID: 23385812 |
| 9 |
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