Cotton leaf curl Bangalore virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000865045.1 |
| Isolate |
India |
| Release date |
2015/2/13 |
| Submitter |
Chowda Reddy,R.V., Muniyappa,V., Colvin,J., Seal,S. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTGTGGGTCCCGCCACTAACACTTGTCTGCCAATCACATGGCGCGCTCAAAGCTTAAATAATTTCCCGCTTATTATAAGTACTTCGTCCCTAAGTTTCTGTTTGAAAAATGTGGGATCCACTGTTAAACGAGTTCCCCGAGACGGAACACGGGTTTCGTTGCGTGCTTGCTATCAAATATCTTCAACAATTGTCTGAAGAATACTCCCCTGATACGCTAGGTTACGATTTAATCCGCGATTTAATGTCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCGTTTGAGTCTAGACACGATGTAGTCCATATAGGTAAGGTCATGTGCATTAGTGATGTTACACGTGGTACTGGGTTAACCCATAGAGTTGGTAAGCGTTTTTGTGTGAAGTCTGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATTTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGATTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGTACTGCTACGGTGAAGAATATGCATAGAGATCGTTATCAGGTGCTGAGGAAGTGGCATGCAACTGTTACTGGTGGACAGTACGCCTCAAAGGAACAGGCATTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAACTATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACCCATGCCTCAAATCCTGTATACGCTACGCTTAAGATCCGTATTTATTTCTATGATTCCGTAACCAATTGATATTAATAAAGATCGAATTTTATTTCTGAAGTTTGGTCTACAAACATGGTGTTTTCTATTTTCTTGTACAATACATGATCAACTGCTCTAATAATTGAATTAATTGAGATTACACCTAGATTGTTGAGGTACTTGAGGACCTGTGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAATTGAATTGGATTCTGATCGTTATTATGTCCATGTTGTTTGTGAATGGCCGGTTGGGGAGGCTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCGAGATATAGACGCCACTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATAGACAAATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCTGTTGCGTCTCTTCGCTTCCCTGTGCTGAACTTTGATTGGTACCTGAGTACAATGGTCCTTCAAGGGTGATGAAGATCGCATTCTTTACTGCCCAGTTCTTTAGTGCTGTGTTCTTTTCCTCGTCGAGAAATTCTTTATAACTGCTGTTGGGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTGGGACTCAGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCTCCCTCAATTACTATACTTCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAAAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGGAGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGTAAGAGAGCAATTTGGATAAGTGAGGAAATAATTTTTGGAATTAATAAGAAAACGTTTCGGATGCATGTTGACCAAATAGAGGACCCGATTGACCAGCTCTTACAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGAGACCCAAATGGCATTGTCGTAATTTTGGAATGAAAATCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_277435.1
|
|
Location
|
131-478 |
|
Gene Name
|
AV2 |
|
Protein Name
|
CP expression activator |
|
Coding Region
|
ATGTGGGATCCACTGTTAAACGAGTTCCCCGAGACGGAACACGGGTTTCGTTGCGTGCTTGCTATCAAATATCTTCAACAATTGTCTGAAGAATACTCCCCTGATACGCTAGGTTACGATTTAATCCGCGATTTAATGTCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGA |
|
Protein Sequence
|
MWDPLLNEFPETEHGFRCVLAIKYLQQLSEEYSPDTLGYDLIRDLMSILRSRNYVEASCRYRHFYPRVEGASASELRQPLCNPCSCPHCPRHKISHVGEQAHEPQAQNVQDVQKP |
|
NCBI Accession
|
YP_277436.1
|
|
Location
|
291-1061 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCGTTTGAGTCTAGACACGATGTAGTCCATATAGGTAAGGTCATGTGCATTAGTGATGTTACACGTGGTACTGGGTTAACCCATAGAGTTGGTAAGCGTTTTTGTGTGAAGTCTGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATTTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGATTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGTACTGCTACGGTGAAGAATATGCATAGAGATCGTTATCAGGTGCTGAGGAAGTGGCATGCAACTGTTACTGGTGGACAGTACGCCTCAAAGGAACAGGCATTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAACTATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACCCATGCCTCAAATCCTGTATACGCTACGCTTAAGATCCGTATTTATTTCTATGATTCCGTAACCAATTGA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRMWANRPMNRKPRMYRMYRSLDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGNYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_277437.1
|
|
Location
|
1064-1468 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGTCTATATCTCGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAGCCTCCCCAACCGGCCATTCACAAACAACATGGACATAATAACGATCAGAATCCAATTCAATTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACACAGGTCCTCAAGTACCTCAACAATCTAGGTGTAATCTCAATTAATTCAATTATTAGAGCAGTTGATCATGTATTGTACAAGAAAATAGAAAACACCATGTTTGTAGACCAAACTTCAGAAATAAAATTCGATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAAQAWSGVYISEVPNPLYFKILSLPNRPFTNNMDIITIRIQFNYNLRRALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINSIIRAVDHVLYKKIENTMFVDQTSEIKFDLY |
|
NCBI Accession
|
YP_277438.1
|
|
Location
|
1161-1613 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator |
|
Coding Region
|
ATGCGATCTTCATCACCCTTGAAGGACCATTGTACTCAGGTACCAATCAAAGTTCAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATTTGTCTATCAACTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGTCTATATCTCGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAGCCTCCCCAACCGGCCATTCACAAACAACATGGACATAATAACGATCAGAATCCAATTCAATTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACACAGGTCCTCAAGTACCTCAACAATCTAGGTGTAATCTCAATTAA |
|
Protein Sequence
|
MRSSSPLKDHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSINCHNHGFTHRGTHHCSSSMEWRLYLGSSKSPIFQDPKPPQPAIHKQHGHNNDQNPIQLQPSESSGSAQVFSDLPNLDDLTPSDWSFLKGIQNTGPQVPQQSRCNLN |
|
NCBI Accession
|
YP_277439.1
|
|
Location
|
1510-2598 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCATCCGAAACGTTTTCTTATTAATTCCAAAAATTATTTCCTCACTTATCCAAATTGCTCTCTTACAAAAGAAGAAGCACTTTCCCAACTTCAAAACCTACAAACTCCTACAAATAAAAAATTCATCAAGATCTGCAGAGAGCTCCATGAAAATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAAGGGAAGTACAAGTGCCAAAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGAGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTTTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGTTTGGGCCATCGATAACGTTGTCGATGCCGCTGCGCGGCCCCTTAGACCTCGAAGTATAGTAATTGAGGGAGATAGTCGAACGGGGAAGACGATGTGGGCCAGATCACTGGGACCACATAACTATTTATGCGGACATCTGGACCTGAGTCCCAAGGTCTACAATAACGACGCCTGGTATAACGTCATTGATGACGTCGATCCGCATTTCCTCAAGCACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCAGGTCCCAACAGCAGTTATAAAGAATTTCTCGACGAGGAAAAGAACACAGCACTAAAGAACTGGGCAGTAAAGAATGCGATCTTCATCACCCTTGAAGGACCATTGTACTCAGGTACCAATCAAAGTTCAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTAGATCTTGA |
|
Protein Sequence
|
MHPKRFLINSKNYFLTYPNCSLTKEEALSQLQNLQTPTNKKFIKICRELHENGEPHIHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLEGPLYSGTNQSSAQGSEETQQEEESRS |
|
NCBI Accession
|
YP_277440.1
|
|
Location
|
2142-2444 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAAGGGAAGTACAAGTGCCAAAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGAGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG |
|
Protein Sequence
|
MGNLIFTCSSSSKGSTSAKIRDSSTWYPQPGQHISIRTFRELNQAQMSRTTSTRTETLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN |