Cotton leaf curl Bangalore virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000865045.1
Isolate India
Release date 2015/2/13
Submitter Chowda Reddy,R.V., Muniyappa,V., Colvin,J., Seal,S.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_007290
ACCGGATGGCCGCGCGATTTTTTTGTGGGTCCCGCCACTAACACTTGTCTGCCAATCACATGGCGCGCTCAAAGCTTAAATAATTTCCCGCTTATTATAAGTACTTCGTCCCTAAGTTTCTGTTTGAAAAATGTGGGATCCACTGTTAAACGAGTTCCCCGAGACGGAACACGGGTTTCGTTGCGTGCTTGCTATCAAATATCTTCAACAATTGTCTGAAGAATACTCCCCTGATACGCTAGGTTACGATTTAATCCGCGATTTAATGTCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCGTTTGAGTCTAGACACGATGTAGTCCATATAGGTAAGGTCATGTGCATTAGTGATGTTACACGTGGTACTGGGTTAACCCATAGAGTTGGTAAGCGTTTTTGTGTGAAGTCTGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATTTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGATTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGTACTGCTACGGTGAAGAATATGCATAGAGATCGTTATCAGGTGCTGAGGAAGTGGCATGCAACTGTTACTGGTGGACAGTACGCCTCAAAGGAACAGGCATTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAACTATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACCCATGCCTCAAATCCTGTATACGCTACGCTTAAGATCCGTATTTATTTCTATGATTCCGTAACCAATTGATATTAATAAAGATCGAATTTTATTTCTGAAGTTTGGTCTACAAACATGGTGTTTTCTATTTTCTTGTACAATACATGATCAACTGCTCTAATAATTGAATTAATTGAGATTACACCTAGATTGTTGAGGTACTTGAGGACCTGTGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAATTGAATTGGATTCTGATCGTTATTATGTCCATGTTGTTTGTGAATGGCCGGTTGGGGAGGCTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCGAGATATAGACGCCACTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATAGACAAATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCTGTTGCGTCTCTTCGCTTCCCTGTGCTGAACTTTGATTGGTACCTGAGTACAATGGTCCTTCAAGGGTGATGAAGATCGCATTCTTTACTGCCCAGTTCTTTAGTGCTGTGTTCTTTTCCTCGTCGAGAAATTCTTTATAACTGCTGTTGGGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTGGGACTCAGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCTCCCTCAATTACTATACTTCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAAAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGGAGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGTAAGAGAGCAATTTGGATAAGTGAGGAAATAATTTTTGGAATTAATAAGAAAACGTTTCGGATGCATGTTGACCAAATAGAGGACCCGATTGACCAGCTCTTACAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGAGACCCAAATGGCATTGTCGTAATTTTGGAATGAAAATCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_277435.1
Location 131-478
Gene Name AV2
Protein Name CP expression activator
Coding Region ATGTGGGATCCACTGTTAAACGAGTTCCCCGAGACGGAACACGGGTTTCGTTGCGTGCTTGCTATCAAATATCTTCAACAATTGTCTGAAGAATACTCCCCTGATACGCTAGGTTACGATTTAATCCGCGATTTAATGTCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGA
Protein Sequence MWDPLLNEFPETEHGFRCVLAIKYLQQLSEEYSPDTLGYDLIRDLMSILRSRNYVEASCRYRHFYPRVEGASASELRQPLCNPCSCPHCPRHKISHVGEQAHEPQAQNVQDVQKP

NCBI Accession YP_277436.1
Location 291-1061
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCTTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAACCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCTTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCGTTTGAGTCTAGACACGATGTAGTCCATATAGGTAAGGTCATGTGCATTAGTGATGTTACACGTGGTACTGGGTTAACCCATAGAGTTGGTAAGCGTTTTTGTGTGAAGTCTGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATTTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGATTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGTACTGCTACGGTGAAGAATATGCATAGAGATCGTTATCAGGTGCTGAGGAAGTGGCATGCAACTGTTACTGGTGGACAGTACGCCTCAAAGGAACAGGCATTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAACTATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACCCATGCCTCAAATCCTGTATACGCTACGCTTAAGATCCGTATTTATTTCTATGATTCCGTAACCAATTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRMWANRPMNRKPRMYRMYRSLDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGNYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_277437.1
Location 1064-1468
Gene Name AC3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGTCTATATCTCGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAGCCTCCCCAACCGGCCATTCACAAACAACATGGACATAATAACGATCAGAATCCAATTCAATTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACACAGGTCCTCAAGTACCTCAACAATCTAGGTGTAATCTCAATTAATTCAATTATTAGAGCAGTTGATCATGTATTGTACAAGAAAATAGAAAACACCATGTTTGTAGACCAAACTTCAGAAATAAAATTCGATCTTTATTAA
Protein Sequence MDSRTGEPITAAQAWSGVYISEVPNPLYFKILSLPNRPFTNNMDIITIRIQFNYNLRRALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINSIIRAVDHVLYKKIENTMFVDQTSEIKFDLY

NCBI Accession YP_277438.1
Location 1161-1613
Gene Name AC2
Protein Name transcriptional activator
Coding Region ATGCGATCTTCATCACCCTTGAAGGACCATTGTACTCAGGTACCAATCAAAGTTCAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATTTGTCTATCAACTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGTCTATATCTCGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAGCCTCCCCAACCGGCCATTCACAAACAACATGGACATAATAACGATCAGAATCCAATTCAATTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACACAGGTCCTCAAGTACCTCAACAATCTAGGTGTAATCTCAATTAA
Protein Sequence MRSSSPLKDHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSINCHNHGFTHRGTHHCSSSMEWRLYLGSSKSPIFQDPKPPQPAIHKQHGHNNDQNPIQLQPSESSGSAQVFSDLPNLDDLTPSDWSFLKGIQNTGPQVPQQSRCNLN

NCBI Accession YP_277439.1
Location 1510-2598
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCATCCGAAACGTTTTCTTATTAATTCCAAAAATTATTTCCTCACTTATCCAAATTGCTCTCTTACAAAAGAAGAAGCACTTTCCCAACTTCAAAACCTACAAACTCCTACAAATAAAAAATTCATCAAGATCTGCAGAGAGCTCCATGAAAATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAAGGGAAGTACAAGTGCCAAAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGAGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTTTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGTTTGGGCCATCGATAACGTTGTCGATGCCGCTGCGCGGCCCCTTAGACCTCGAAGTATAGTAATTGAGGGAGATAGTCGAACGGGGAAGACGATGTGGGCCAGATCACTGGGACCACATAACTATTTATGCGGACATCTGGACCTGAGTCCCAAGGTCTACAATAACGACGCCTGGTATAACGTCATTGATGACGTCGATCCGCATTTCCTCAAGCACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCAGGTCCCAACAGCAGTTATAAAGAATTTCTCGACGAGGAAAAGAACACAGCACTAAAGAACTGGGCAGTAAAGAATGCGATCTTCATCACCCTTGAAGGACCATTGTACTCAGGTACCAATCAAAGTTCAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTAGATCTTGA
Protein Sequence MHPKRFLINSKNYFLTYPNCSLTKEEALSQLQNLQTPTNKKFIKICRELHENGEPHIHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLEGPLYSGTNQSSAQGSEETQQEEESRS

NCBI Accession YP_277440.1
Location 2142-2444
Gene Name AC4
Protein Name AC4
Coding Region ATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAAGGGAAGTACAAGTGCCAAAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGAGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG
Protein Sequence MGNLIFTCSSSSKGSTSAKIRDSSTWYPQPGQHISIRTFRELNQAQMSRTTSTRTETLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN

References More References in PubMed

1

Tomato leaf curl Bangalore virus (ToLCBV): infectivity and enhanced pathogenicity with diverse betasatellites.

Tiwari N, et al.  Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5.

PMID: 20526636

2

Association of a recombinant Cotton leaf curl Bangalore virus with yellow vein and leaf curl disease of okra in India.

Venkataravanappa V, et al.  Indian J Virol. 2013 Sep;24(2):188-98. doi: 10.1007/s13337-013-0141-4. Epub 2013 Jul 16.

PMID: 24426275

3

Biochemical characterization of C4 protein of Cotton leaf curl Kokhran Virus-Dabawali.

Guha D, et al.  Biochim Biophys Acta. 2013 Jun;1830(6):3734-44. doi: 10.1016/j.bbagen.2013.02.026. Epub 2013 Mar 14.

PMID: 23500017

4

Genetic variability of begomoviruses associated with cotton leaf curl disease originating from India.

Kirthi N, et al.  Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5.

PMID: 15669112

5

Kinetics of interaction of Cotton Leaf Curl Kokhran Virus-Dabawali (CLCuKV-Dab) coat protein and its mutants with ssDNA.

Priyadarshini PC, et al.  Virology. 2009 Apr 10;386(2):427-37. doi: 10.1016/j.virol.2009.01.016. Epub 2009 Feb 23.

PMID: 19237182

6

Functional characterization of coat protein and V2 involved in cell to cell movement of Cotton leaf curl Kokhran virus-Dabawali.

Poornima Priyadarshini CG, et al.  PLoS One. 2011;6(11):e26929. doi: 10.1371/journal.pone.0026929. Epub 2011 Nov 16.

PMID: 22110597

7

Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.).

Venkataravanappa V, et al.  Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1.

PMID: 35991698

8

Suppressors of RNA silencing encoded by tomato leaf curl betasatellites.

Shukla R, et al.  J Biosci. 2013 Mar;38(1):45-51. doi: 10.1007/s12038-012-9291-6.

PMID: 23385812

9

Characterization of a new begomovirus and a beta satellite associated with the leaf curl disease of French bean in northern India.

Kamaal N, et al.  Virus Genes. 2013 Feb;46(1):120-7. doi: 10.1007/s11262-012-0832-8. Epub 2012 Oct 10.

PMID: 23054434