Cotton leaf curl Alabad virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842045.1
Release date 2015/2/12
Submitter Zhou,X., Liu,Y., Robinson,D.J., Harrison,B.D.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004582
ACCGGATGGCCGCGCGATTTTTTTTAGTGGTGGGTCCAGAACGCACGACGATGCAGACTCAAAGCTTAGATAACGCTCCTTCGGCTATAAGTACTTGCGCACTAAGTTTCAAATTGAAACATGTGGGATCCACTAGTAAACGAATTCCCGGATACGGTGCACGGGTTTCGTTGTATGCTTTCTGTCAAATATTTGCAACTTTTGTCGCAGGATTATTCTCCAGATACCCTTGGTTACGAGTTAATACGTGATTTAATCTGTATTCTACGCTCCCGTAATTATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAACCCAGAATGTACCGGATGTACAGAAGTCCGGATGTTCCAAGGGGATGTGAGGGTCCCTGTAAGGTACAGTCGTTTGAATCTCGACACGATGTCGTTCATATTGGTAAGGTAATGTGTATTTCGGATGTTACGCGTGGAGTCGGTTTGACCCATCGTATAGGTAAGCGTTTTTGTGTCAAGTCAGTTTATGTTTTAGGTAAGATATGGATGGACGAGAACATCAAGACCAAGAACCATACGAATTCGGTGATGTTTTTCCTTGTTCGTGATCGACGACCGGTAGATAAACCACAAGATTTTGGTGAAGTATTTAATATGTTTGATAACGAGCCCAGTACGGCGACCGTGAAGAACATGCATAGGGATCGGTACCAGGTGTTGAGGAAATGGCATGCAACCGTTACTGGTGGTCAATATGCGAGTAAGGAGCAGGCATTGGTCAAGAAGTTTGTTAGGGTTAACAACTACGTTGTTTACAACCAGCAGGAAGCAGGAAAATACGAGAATCACACCGAGAATGCATTGATGCTTTATATGGCTTGTACCCATGCTAGTAACCCAGTTTATGCTACGCTTAAGATTAGAATATATTTTTATGACTCTGTAACGAACTAATATTAATAAAGTTTGAATTTTATATCTGAATATTGGTCTACATACATTGTTTGATTAATTACATTGTACAATACATGTTCAACGGCTTTAATAACTAAATTAAGTGAGATTACACCTAGATTGTTGAGATACTTGAGTACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTATAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTCATTGTTATGATGTCCATGTTCGTCGTGAATGGACGGTTGTCGTGGCTGAGGATTTTGAAATAAAGGGGATTTGGAACCTCCCAGATAAAGACGCCATTCGTTGAATGAGCTGCAGTGATGCGTTCCCCTGTGCGAGAATCCATGGTTGTGGCAGTTGATACTTAGGTAATAGCTGCATCCACATTCAAGATCCACTCTCCTCCTCCTGGTCCTCCTCTTGGCCTCCCTGTGCTGGACTTTGATGGGCAATTGAGTACAGTGGTTCCTCGAGGGTGATGAAGACTGCATTCTTAACTGCCCAGTTTTTTAGGGCTTGGTTCTTTTCCTCGTCCAGATATTCTTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACATCATCAATGACGTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAAATCTAAATGACCGCATAAGTAATTATGAGGCCCTAATGACCTAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATCACTATACTTTGAGGCCTCAGAGGCCGCGCAGCGGCATCCATGACATTCTCGGAGACCCACTCTTCAAGTTCTTCAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAACGGAGGAGTGAAAATCCTATCTAAATTACTATTTAAATTATGATATTGAAAAATAAATTTTTCTGGGAGTTTTTCCCTTATTATAGCCATAGCTGCTTCTTTAGAACCTGCATTTAGGGCTTCTGCAGCAGCATCATTAGCTGTCTGTTGACCTCCTCTTGCAGATCTTCCATCGATCTGAAATGTGCCCCAGTCGATGTAATCTCCGTCCTTCTCGATGTAGGACTTAACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGAGGTATGAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGGCTTTACCTTTGAATTGGATGAGTGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCAACCCTAATGAATAATTTGTCTGAAGGGCATGAAATGTTAGATAATATATCTAACATCTGTTCTTTTGGAATTGGGCATTTTGGGAAAGTAAGAAAAATATTTTTTGCATTTATGCAAAAAGAATTATTTCTGGGCATTTTTGCTATCGGGGACACTTAAAACTCATATCAATTGGGGACACTGGGGACTCATTTATACTGCGTCCCTAAATGGCATAAATGTAAATATTTGCCTTTATGTTTGAATTTCAAATTCCAAACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_795357.1
Location 121-486
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCACTAGTAAACGAATTCCCGGATACGGTGCACGGGTTTCGTTGTATGCTTTCTGTCAAATATTTGCAACTTTTGTCGCAGGATTATTCTCCAGATACCCTTGGTTACGAGTTAATACGTGATTTAATCTGTATTCTACGCTCCCGTAATTATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAACCCAGAATGTACCGGATGTACAGAAGTCCGGATGTTCCAAGGGGATGTGA
Protein Sequence MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDLICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQETQNVPDVQKSGCSKGM

NCBI Accession NP_795358.1
Location 281-1051
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAACCCAGAATGTACCGGATGTACAGAAGTCCGGATGTTCCAAGGGGATGTGAGGGTCCCTGTAAGGTACAGTCGTTTGAATCTCGACACGATGTCGTTCATATTGGTAAGGTAATGTGTATTTCGGATGTTACGCGTGGAGTCGGTTTGACCCATCGTATAGGTAAGCGTTTTTGTGTCAAGTCAGTTTATGTTTTAGGTAAGATATGGATGGACGAGAACATCAAGACCAAGAACCATACGAATTCGGTGATGTTTTTCCTTGTTCGTGATCGACGACCGGTAGATAAACCACAAGATTTTGGTGAAGTATTTAATATGTTTGATAACGAGCCCAGTACGGCGACCGTGAAGAACATGCATAGGGATCGGTACCAGGTGTTGAGGAAATGGCATGCAACCGTTACTGGTGGTCAATATGCGAGTAAGGAGCAGGCATTGGTCAAGAAGTTTGTTAGGGTTAACAACTACGTTGTTTACAACCAGCAGGAAGCAGGAAAATACGAGAATCACACCGAGAATGCATTGATGCTTTATATGGCTTGTACCCATGCTAGTAACCCAGTTTATGCTACGCTTAAGATTAGAATATATTTTTATGACTCTGTAACGAACTAA
Protein Sequence MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHRIGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_795359.1
Location 1054-1458
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCTCGCACAGGGGAACGCATCACTGCAGCTCATTCAACGAATGGCGTCTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAAAATCCTCAGCCACGACAACCGTCCATTCACGACGAACATGGACATCATAACAATGAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTATACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTACTCAAGTATCTCAACAATCTAGGTGTAATCTCACTTAATTTAGTTATTAAAGCCGTTGAACATGTATTGTACAATGTAATTAATCAAACAATGTATGTAGACCAATATTCAGATATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDIITMRIQFNYNLRKALGVHKCFLTFRIWTTLYPPTGLFLRVFKTQVLKYLNNLGVISLNLVIKAVEHVLYNVINQTMYVDQYSDIKFKLY

NCBI Accession NP_795360.1
Location 1151-1603
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCAGTCTTCATCACCCTCGAGGAACCACTGTACTCAATTGCCCATCAAAGTCCAGCACAGGGAGGCCAAGAGGAGGACCAGGAGGAGGAGAGTGGATCTTGAATGTGGATGCAGCTATTACCTAAGTATCAACTGCCACAACCATGGATTCTCGCACAGGGGAACGCATCACTGCAGCTCATTCAACGAATGGCGTCTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAAAATCCTCAGCCACGACAACCGTCCATTCACGACGAACATGGACATCATAACAATGAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTATACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTACTCAAGTATCTCAACAATCTAGGTGTAATCTCACTTAA
Protein Sequence MQSSSPSRNHCTQLPIKVQHREAKRRTRRRRVDLECGCSYYLSINCHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQPSESSGSAQVFSNLPNLDDLIPSDWSFLKGIQNPSTQVSQQSRCNLT

NCBI Accession NP_795354.1
Location 1500-2591
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGCCCAGAAATAATTCTTTTTGCATAAATGCAAAAAATATTTTTCTTACTTTCCCAAAATGCCCAATTCCAAAAGAACAGATGTTAGATATATTATCTAACATTTCATGCCCTTCAGACAAATTATTCATTAGGGTTGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCACTCATCCAATTCAAAGGTAAAGCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATACCTCCACCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTTAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGCACATTTCAGATCGATGGAAGATCTGCAAGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAAGCCCTAAATGCAGGTTCTAAAGAAGCAGCTATGGCTATAATAAGGGAAAAACTCCCAGAAAAATTTATTTTTCAATATCATAATTTAAATAGTAATTTAGATAGGATTTTCACTCCTCCGTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCTGAAGAACTTGAAGAGTGGGTCTCCGAGAATGTCATGGATGCCGCTGCGCGGCCTCTGAGGCCTCAAAGTATAGTGATTGAGGGAGACAGTCGTACGGGTAAAACGATGTGGGCTAGGTCATTAGGGCCTCATAATTACTTATGCGGTCATTTAGATTTAAGCCCCAAAGTTTACAGCAATGATGCGTGGTATAACGTCATTGATGATGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGAATACCCACAATCTTCCTCTGCAATCCTGGGCCAAACTCATCTTATAAAGAATATCTGGACGAGGAAAAGAACCAAGCCCTAAAAAACTGGGCAGTTAAGAATGCAGTCTTCATCACCCTCGAGGAACCACTGTACTCAATTGCCCATCAAAGTCCAGCACAGGGAGGCCAAGAGGAGGACCAGGAGGAGGAGAGTGGATCTTGA
Protein Sequence MPRNNSFCINAKNIFLTFPKCPIPKEQMLDILSNISCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPHTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGTFQIDGRSARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYHNLNSNLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNQALKNWAVKNAVFITLEEPLYSIAHQSPAQGGQEEDQEEESGS

NCBI Accession NP_795355.1
Location 2177-2434
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCATGCACTCATCCAATTCAAAGGTAAAGCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATACCTCCACCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTTAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGCACATTTCAGATCGATGGAAGATCTGCAAGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAAGCCCTAA
Protein Sequence MGLCISMHSSNSKVKPSSETPDISMSLTLIPPPNSIQTSRELSPALMLSPTSRRTEITSTGAHFRSMEDLQEEVNRQLMMLLQKP

References More References in PubMed

1

A multiplex polymerase chain reaction for the simultaneous detection of the virus and satellite components associated with cotton leaf curl begomovirus disease complex.

Palchoudhury S, et al.  J Virol Methods. 2022 Feb;300:114369. doi: 10.1016/j.jviromet.2021.114369. Epub 2021 Nov 20.

PMID: 34813823
2

Sentinel plot surveillance of cotton leaf curl disease in Pakistan- a case study at the cultivated cotton-wild host plant interface.

Iqbal MJ, et al.  Virus Res. 2023 Aug;333:199144. doi: 10.1016/j.virusres.2023.199144. Epub 2023 Jun 7.

PMID: 37271420
3

Genetic variability of begomoviruses associated with cotton leaf curl disease originating from India.

Kirthi N, et al.  Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5.

PMID: 15669112
4

Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton.

Zubair M, et al.  Sci Rep. 2017 Apr 6;7(1):680. doi: 10.1038/s41598-017-00727-2.

PMID: 28386113
5

Genomic properties of allamanda leaf mottle distortion virus, a new begomovirus from golden trumpet (Allamanda cathartica) in India.

Jailani AAK, et al.  Arch Virol. 2021 Oct;166(10):2905-2909. doi: 10.1007/s00705-021-05179-8. Epub 2021 Aug 12.

PMID: 34383166
6

Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.).

Venkataravanappa V, et al.  Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1.

PMID: 35991698