Genus | Begomovirus |
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NCBI Assembly | GCF_000845165.1 |
Isolate | Mexico: Sonora |
Release date | 2015/2/12 |
Submitter | Brown,J.K., Idris,A.M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_795337.1 |
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Location | 195-950 |
Gene Name | av1 |
Protein Name | coat protein AV1 |
Coding Region | ATGCCCAAGCGTGATGCCCCGTGGCGCTTATTAGCGGGTACGTCTAAGGTAAGTCGAAATGCCAACTACTCTCCCTTGAGAGTATTGGGCCCTAAAGTTAATAAGGCCTCTGAATGGGTTTACAGGCCTATGTACAGGAAGCCCAGAATCTATCGCACGTTAAGGACGCCTGACATTCCGAGAGGCTGTGAAGGGCCATGTAAAGTCCAGTCATATGAACAGCGCCACGATGTCTCACACGTGGGTAAGGTAATGTGTATATCTGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGTTTCTGTGTTAAGTCTGTATATATTTTAGGGAAAATATGGATGGATGAGAATATTAAGCTGAAGAACCACACGAACAGCGTCATTTTTTGGCTGGTTAGAGATCGTAGACCATATGGCACGCCTATGGACTTTGGTCAAGTGTTTAATATGTTTGACAACGAGCCAAGTACTGCCACTGTCAAGAACGATCTCAGAGATAGGTTGCAGGTCATGCACAAGTTTTATGCTAAGGTAACTGGAGGACAATACGCGAGCAACGAGCAAGCCTTGGTCAAGAGATTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAAGCAGGGAAATATGAGAATCACACGGAGAATGCGTTATTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACGTTGAAAATTCGGATCTATTTTTACGATTCGATCATGAATTAA |
Protein Sequence | MPKRDAPWRLLAGTSKVSRNANYSPLRVLGPKVNKASEWVYRPMYRKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDVSHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRLQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
NCBI Accession | NP_795338.1 |
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Location | 947-1345 |
Gene Name | ac3 |
Protein Name | AC3 protein |
Coding Region | ATGGATTCACGCACAGGGGAAATCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAATAAATCCCCTATATTTCAAGATATACGGAGTAGAGGATCTGCTATACACCAGGACGCGTATATACCACGTCCAGATCCGATTCAACCACAACTTACGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGGTCGACTTATTTAATTAGGTTTAAACAGTTGGTTATGTTGTACTTAGACGAATTAGGCGTAATTTCACTTAACAATGTAATTAGAGCTGTTCGTTTCGCAACTGATAAGTCGTATGTCAGTTATGTACTAGAAAATCATTCAATAAAATTTAAATTTTATTAA |
Protein Sequence | MDSRTGEIITARQAENGVYIWEIINPLYFKIYGVEDLLYTRTRIYHVQIRFNHNLRRALHLHKAYLNFQVWTTSLTASGSTYLIRFKQLVMLYLDELGVISLNNVIRAVRFATDKSYVSYVLENHSIKFKFY |
NCBI Accession | NP_795339.1 |
---|---|
Location | 1092-1481 |
Gene Name | ac2 |
Protein Name | AC2 protein |
Coding Region | ATGTTATCTTCATCACTCTCGACGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCGATTAGACGACGACGCATTGATCTAAACTGTGGGTGCACCATATACTTCCACATAGGCTGCACCGGTCATGGATTCACGCACAGGGGAAATCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAATAAATCCCCTATATTTCAAGATATACGGAGTAGAGGATCTGCTATACACCAGGACGCGTATATACCACGTCCAGATCCGATTCAACCACAACTTACGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGGTCGACTTATTTAATTAG |
Protein Sequence | MLSSSLSTPPSIKKAHRQAKRRAIRRRRIDLNCGCTIYFHIGCTGHGFTHRGNHHCTSGREWRVYLGDNKSPIFQDIRSRGSAIHQDAYIPRPDPIQPQLTESVASPQSLPELPSLDDISDSFWVDLFN |
NCBI Accession | NP_795340.1 |
---|---|
Location | 1408-2472 |
Gene Name | ac1 |
Protein Name | replication associated protein AC1 |
Coding Region | ATGCCTAGAAACCCCGATTCTTTTCGTTTACAAGCCAGACATATTTTCTTAACCTATCCCAAGTGCGATATCCCAAAAAATGAAGCTCTTCAAATGCTTCAAACCTTATCATGGTCAGTCGTCAAACCAACATATATTCGAGTTGCCAGAGAGGAGCACTCGGACGGATTCCCACACCTTCACTGTCTCATCCAACTCTCTGGAAAGTCCAACATCAAGAATAAGAGATTTTTCGACCTTACTCACCCCAGAAGGTCGACCAATTTTCACCCAAACATACAAGCAGCCAAAGACGCCAACGCCGTCAAGAATTACATCACCAAAGACGGCGATTGTTGTGAATCCGGACAGTTCAAAGTGCCTGGGGGTACAAAGAAGAATAAAGACGACGTCTATTATAACGCCATCAATGCACCTAGTTTGGCGGAAGCTCTTGCAATTATCCGGGCCGGAGATCCAAGGGCGTTCATCGTGAGTTACCATAACATTACAGCGAACTTGGAACGCCTTTTCAAAAAGGCGCCTGAACAATGGGTCCCTCCATTTCCACTTTCCTCTTTCACTAACGTTCCTGAACAGATGCAAGAATGGGCGGATGATTATTTTGGAATGGGTCCCGCTGCGCGGCCTGTAAGACCAGTTAGTCTCATAGTGGAAGGTGATTCTAGAACGGGCAAGACGATGTGGGCTCGTGCTTTAGGCCCACATAATTACCTCAGTGGACACCTGGACTTCAATAATCGAGTGTACTCGAATAATGTTGCCTATAACGTCATTGATGACGTAGCACCGCAATACCTAAAGCTAAAGCATTGGAAAGAGCTTCTTGGGGCCCAAAAAGACTGGCAGTCAAATTGCAAGTACGGGAAACCAGTTCAAATTAAAGGAGGGATCCCTTCAATCGTGCTTTGCAATCCAGGCGAGGGATCCAGCTATAAAGATTTCCTGGATAAAGCGGAAAATGCGTCGCTCAAACATTGGACTCTCAAGAATGTTATCTTCATCACTCTCGACGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCGATTAG |
Protein Sequence | MPRNPDSFRLQARHIFLTYPKCDIPKNEALQMLQTLSWSVVKPTYIRVAREEHSDGFPHLHCLIQLSGKSNIKNKRFFDLTHPRRSTNFHPNIQAAKDANAVKNYITKDGDCCESGQFKVPGGTKKNKDDVYYNAINAPSLAEALAIIRAGDPRAFIVSYHNITANLERLFKKAPEQWVPPFPLSSFTNVPEQMQEWADDYFGMGPAARPVRPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNNRVYSNNVAYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENASLKHWTLKNVIFITLDAPLYQEGTQASQEEGD |
NCBI Accession | NP_795341.1 |
---|---|
Location | 468-1238 |
Gene Name | bv1 |
Protein Name | BV1 protein |
Coding Region | ATGTACAGTTTAAAGAGTAGACGTGGATCGAATTACATTCAAGCACGTGGAAACTCACGGACCCCATTATTCAAACGACATTCCACTGGTAAGCGTTATGGAGGAAGACGACTACAGCCACTGAATGTGAAAAGAGAAGATGAACCCAGAATGTCGACCCAACGCATCCACGAGAATCAATATGGGTCGGAATTTACAATGGCCCACAACACAGCCATTTCGACCTATATCTCCTATCCTAATCTGGGCAAGACTGAACCCAATCGAACCAGGTCGTACATCAAGCTGAAACGATTGCGTTTCAAGGGCACGGTGAAGATCGAACGAGTTCCTACTGACGTGGCTATGGATGGTTCGATTCCCAACACGGAAGGGGTGTTCTCATTGGTCATAGTCGTTGACCGAAAACCTCATTTGACTGCATCTGGATGCCTACATACGTTTGACGAACTATTTGGTGCGATAATCCACAGCCATGGAACCCTGTCTATAGTTCCCGCGTTGAAGGATCGTTACTACATACGGCATGTAATTAAACGGGTACTGTCCGTCGAGAAAGATAACGTCATGGTGGATATTGAAGGATCCACTGCTCTGTCTAATAGGCGTTTTAATTGTTGGGCCAGTTTTAAAGATCTTGATTTGGATTCATGTAAGGGTGTTTATGACAACATAAACAAGAATGCCCTGTTAGTTTATTACTCATGGGTATCGGATACTGTGTCTAAAGCATCCACTTATGTATCGTATGACCTTGATTATATTGGATAA |
Protein Sequence | MYSLKSRRGSNYIQARGNSRTPLFKRHSTGKRYGGRRLQPLNVKREDEPRMSTQRIHENQYGSEFTMAHNTAISTYISYPNLGKTEPNRTRSYIKLKRLRFKGTVKIERVPTDVAMDGSIPNTEGVFSLVIVVDRKPHLTASGCLHTFDELFGAIIHSHGTLSIVPALKDRYYIRHVIKRVLSVEKDNVMVDIEGSTALSNRRFNCWASFKDLDLDSCKGVYDNINKNALLVYYSWVSDTVSKASTYVSYDLDYIG |
NCBI Accession | NP_795342.1 |
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Location | 1275-2156 |
Gene Name | bc1 |
Protein Name | BC1 protein |
Coding Region | ATGGATTCTCAATTAGCTAATCCCCCAAACGCATTTAATTATATAGAGTCTCAGAGGGATGAATATCAGCTTTCCCATGACCTAACTGAGATCGTTCTGCAGTTTCCGTCAACGGCGGCACAATTAACGGCGAGACTCAGTCGCAGTTGCATGAAGATCGATCATTGCGTTATCGAGTACAGGCAGCAGGTGCCAATTAACGCGACTGGTACAGTGATAGTGGAGATTCACGACAAGAGGATGACTGATAATGAATCATTACAATCGTCGTGGACTTTTCCGATCAGGTGTAACATAGATCTCCACTATTTTTCAGCTTCCTTCTTCTCTCTCAAAGACCCAATCCCTTGGAAACTCTATTACAGAGTTTCTGATACGAATGTTCAACAGCGTACCCACTTCGCAAAATTCAAAGGGAAGCTGAAATTATCGACCGCCAAACATTCCGTCGATATTCCGTTCAAGGCGCCAACGGTAAAGATCCTTTCCAAACAGTTCTCCGCTAAAGACGTTGATTTCTCACATGTAGACTATGGTAAATGGGAAAGGAAACTAATTAGGTCCGCATCCATGAACAGATTTGGGCTTCCAGGCCCAATAGAAATAAGGCCAGGGGAGTCGTGGGCGACCAGGAGTACCATAGGGCCCGTTAACGAAGATGCGGACTCACAGTCCAATAACGAACAGACACCTTACAGAGAGCTGCACAGGTTAGGGTCCACTGTACTGGATCCAGGTGACTCGGCATCAATAGTAGGGGCCCATAGGGCTGAGTCCAACATTACCATGTCTATGGCCCAATTAAACGAACTGGTTAGGACAACGGTCCAAGAATGTATCAAGAGTAGTTGTAATGGTCCTCAACCAAAAATATTTAAATAA |
Protein Sequence | MDSQLANPPNAFNYIESQRDEYQLSHDLTEIVLQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQSSWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVQQRTHFAKFKGKLKLSTAKHSVDIPFKAPTVKILSKQFSAKDVDFSHVDYGKWERKLIRSASMNRFGLPGPIEIRPGESWATRSTIGPVNEDADSQSNNEQTPYRELHRLGSTVLDPGDSASIVGAHRAESNITMSMAQLNELVRTTVQECIKSSCNGPQPKIFK |
1 |
Idris AM, et al. Phytopathology. 2004 Oct;94(10):1068-74. doi: 10.1094/PHYTO.2004.94.10.1068. PMID: 18943795 |
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2 |
Method: low-cost delivery of the cotton leaf crumple virus-induced gene silencing system. Tuttle JR, et al. Plant Methods. 2012 Aug 1;8(1):27. doi: 10.1186/1746-4811-8-27. PMID: 22853641 |
3 |
Tuttle JR, et al. Plant Physiol. 2008 Sep;148(1):41-50. doi: 10.1104/pp.108.123869. Epub 2008 Jul 11. PMID: 18621976 |
4 |
Efficient virus-mediated genome editing in cotton using the CRISPR/Cas9 system. Lei J, et al. Front Plant Sci. 2022 Nov 16;13:1032799. doi: 10.3389/fpls.2022.1032799. eCollection 2022. PMID: 36466231 |
5 |
Seo YS, et al. Plant Dis. 2006 Jul;90(7):877-884. doi: 10.1094/PD-90-0877. PMID: 30781024 |
6 |
Tiendrébéogo F, et al. Virol J. 2010 Feb 23;7:48. doi: 10.1186/1743-422X-7-48. PMID: 20178575 |
7 |
Virus-induced gene silencing of fiber-related genes in cotton. Tuttle JR, et al. Methods Mol Biol. 2015;1287:219-34. doi: 10.1007/978-1-4939-2453-0_16. PMID: 25740368 |
8 |
Chitinase of Trichoderma longibrachiatum for control of Aphis gossypii in cotton plants. Anwar W, et al. Sci Rep. 2023 Aug 14;13(1):13181. doi: 10.1038/s41598-023-39965-y. PMID: 37580401 |
9 |
Chen LF, et al. Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x. PMID: 19400843 |
10 |
Virus-induced gene silencing (VIGS) in Cannabis sativa L. Schachtsiek J, et al. Plant Methods. 2019 Dec 26;15:157. doi: 10.1186/s13007-019-0542-5. eCollection 2019. PMID: 31889981 |