Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000845265.1 |
Isolate | Viet Nam |
Release date | 2015/2/12 |
Submitter | Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_115508.1 |
---|---|
Location | 236-1012 |
Gene Name | AV1 |
Protein Name | CP protein |
Coding Region | ATGCCTAAGCGCGATGCCCCATGGCGCTTGATGGCGGGAACCAGTAAGGTTAGCCGCTCATCTAATTATTCGCCTCGTGGAGGCGTTTCCGACTCAGGTTCTTATCTTCCACGTAGATTTAGCAGGGCCTCACTATGGGCAAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACCTATAGGTCCCCTGACGTTCCTAAAGGTTGTGAAGGGCCTTGTAAGGTCCAGTCATTTGAACAGCGTCACGATATTGCTCATACAGGGAAGGTCATATGTTTATCAGATGTTACACGTGGTAATGGTATTACCCACCGTGTTGGTAAACGTTTCTGTGTTAAGTCTGTATATATTTTAGGTAAAATATGGATGGATGAGAATATTAAAGTTAAGAATCACACTAACAGTGTTATGTTCTGGTTAGTTAGGGATAGAAGGCCGTTTGGTTCACCGATGGATTTTGGACAGGTGTTCAACATGTATGATAATGAGCCAAGTACAGCGACAGTTAAGAACGATCTCCGTGATCGTTATCAGGTCATGCATCGGTTTTCTGCAAAGGTTACTGGTGGACAGTATGCTAGCAATGAGCAGGCTCTCGTGAGGCGTTTTTGGAAGGTCAATAACCATGTGGTTTATAACCATCAAGAAGCCGCTAAGTACGAGAATCACACGGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACTTTGAAGATACGGATCTACTTTTATGATTCGATATCTAATTAA |
Protein Sequence | MPKRDAPWRLMAGTSKVSRSSNYSPRGGVSDSGSYLPRRFSRASLWANRPMYRKPRIYRTYRSPDVPKGCEGPCKVQSFEQRHDIAHTGKVICLSDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKVKNHTNSVMFWLVRDRRPFGSPMDFGQVFNMYDNEPSTATVKNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
NCBI Accession | YP_115509.1 |
---|---|
Location | 1009-1401 |
Gene Name | AC3 |
Protein Name | REn protein |
Coding Region | ATGGATTTACGCACCGCGGAACCCATCACTGCGTCTCAGGCAGAGAATTCCGCTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAGGATAATCGACGCCTGGGAATACAACCGGAGGAACATACTAATGTTCCAGATCCGGTTCAACCACAACTTGCGGAGGCGTCTTCATCTTCACAAGTGTTTCCTGAATTTCCGCATCTGGACGACATCCAGTTGGCTGATCAGGAGTTTTTTTCAAGTTTTTTGTTCAAGGATTAATCGTTATTTATATAATATAGGTGTTATAGGCATTAATAATGTAATTAGAGCGATTCAATATGCCGTGGATTCACTGCCTTATGTTGAATGTAATGAACAACAGCATATAATAAAATTCAATCTTTATTAA |
Protein Sequence | MDLRTAEPITASQAENSAFIWEVPNPLYFRIIDAWEYNRRNILMFQIRFNHNLRRRLHLHKCFLNFRIWTTSSWLIRSFFQVFCSRINRYLYNIGVIGINNVIRAIQYAVDSLPYVECNEQQHIIKFNLY |
NCBI Accession | YP_115510.1 |
---|---|
Location | 1139-1564 |
Gene Name | AC2 |
Protein Name | TrAP protein |
Coding Region | ATGACTGGGCCAAGAAGAACTCCATCTACATCACCATCACGGAGCCTCTCTACAGCACCGTCGATCAAGCCTCGACATCGTCACGCCAAGAAAGTGGTTCGTCGGAGACGTATTGATCTGGAGTGTGGCTGCACCATCTACGTCAGCATAAGCTGCCGTGAAGATGGATTTACGCACCGCGGAACCCATCACTGCGTCTCAGGCAGAGAATTCCGCTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAGGATAATCGACGCCTGGGAATACAACCGGAGGAACATACTAATGTTCCAGATCCGGTTCAACCACAACTTGCGGAGGCGTCTTCATCTTCACAAGTGTTTCCTGAATTTCCGCATCTGGACGACATCCAGTTGGCTGATCAGGAGTTTTTTTCAAGTTTTTTGTTCAAGGATTAA |
Protein Sequence | MTGPRRTPSTSPSRSLSTAPSIKPRHRHAKKVVRRRRIDLECGCTIYVSISCREDGFTHRGTHHCVSGREFRFYLGGSKSPLFQDNRRLGIQPEEHTNVPDPVQPQLAEASSSSQVFPEFPHLDDIQLADQEFFSSFLFKD |
NCBI Accession | YP_115511.1 |
---|---|
Location | 1449-2528 |
Gene Name | AC1 |
Protein Name | rep protein |
Coding Region | ATGGGAAGTCGTTTTGTTAAAACAGCATCTTCTTTTTTTTTAACTTGGCCTAGATGCCCAATCAACAAAGAGTCAGCCTTAGAGCAAATTAAAACACTTTCCCTTCCAACTAATATCGTCTATATTAGGGTTTGCGAAGAAAAACATCAAGATGGCTCTCCGCATCTGCATGCCCTGGTTCAATTCCAGAAGAAGTACAGATGCACGAACTGCAGATTGTTCGATCTATCCAATCCAAATTCATCACAACAATACCATTGTAATATACAGACTGCACGCTCCTCCTCCGACGCCAAATCGTACATCGAAAAAGATGGAGTATTCTGCGAATGGGGTGAATTCAAGATCGACGGCCGATCATCCAGAGGAGGACAACAATCCGCAAACGATGCATACGCTAAAGCACTTAACAGCGGAGGTAAGGACGAAGCTCTCACAATAATTAAGGAATTACTTCCAAAAGATTATGTTTTACAGTATCATAATCTTAACGCTAATCTAGAGCGAATATTCGCTCCACCAACAACAGTATACATGCCGCCATTCCAAACGACGACGTTTAACAATGTACCGGAAGCATTAACAGATTGGGTCACAACAAATGTGGCCGATTCCGCTGCGCGGCCTTTCAGACCTATATCCATAATAATCGAAGGCCCATCCAGAACAGGTAAAACATTATGGGCCAGGAGTTTAGGCCCTCACAATTATCTGTGTGGGCATTTGGATCTTAGCCCAAAAGTATACTCTAATAATGCGTGGTATAACGTCATTGATGACGTAGATCCGCACTTCCTCAAACATATGAAGGAATTTATGGGGGCCCAGAGAGACTGGCAATCGAACTGCAAGTACGGGAAACCTATTCAAATTAAAGGAGGAATCCCAACAATCTTCCTCTGCAATCCTGGTCCACAATCTTCATATAAGGAGTTCTTCGAAGAGGAAAAGAACAAAGCAATCAATGACTGGGCCAAGAAGAACTCCATCTACATCACCATCACGGAGCCTCTCTACAGCACCGTCGATCAAGCCTCGACATCGTCACGCCAAGAAAGTGGTTCGTCGGAGACGTATTGA |
Protein Sequence | MGSRFVKTASSFFLTWPRCPINKESALEQIKTLSLPTNIVYIRVCEEKHQDGSPHLHALVQFQKKYRCTNCRLFDLSNPNSSQQYHCNIQTARSSSDAKSYIEKDGVFCEWGEFKIDGRSSRGGQQSANDAYAKALNSGGKDEALTIIKELLPKDYVLQYHNLNANLERIFAPPTTVYMPPFQTTTFNNVPEALTDWVTTNVADSAARPFRPISIIIEGPSRTGKTLWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHFLKHMKEFMGAQRDWQSNCKYGKPIQIKGGIPTIFLCNPGPQSSYKEFFEEEKNKAINDWAKKNSIYITITEPLYSTVDQASTSSRQESGSSETY |
NCBI Accession | YP_115512.1 |
---|---|
Location | 2087-2377 |
Gene Name | AC4 |
Protein Name | C4 protein |
Coding Region | ATGGCTCTCCGCATCTGCATGCCCTGGTTCAATTCCAGAAGAAGTACAGATGCACGAACTGCAGATTGTTCGATCTATCCAATCCAAATTCATCACAACAATACCATTGTAATATACAGACTGCACGCTCCTCCTCCGACGCCAAATCGTACATCGAAAAAGATGGAGTATTCTGCGAATGGGGTGAATTCAAGATCGACGGCCGATCATCCAGAGGAGGACAACAATCCGCAAACGATGCATACGCTAAAGCACTTAACAGCGGAGGTAAGGACGAAGCTCTCACAATAA |
Protein Sequence | MALRICMPWFNSRRSTDARTADCSIYPIQIHHNNTIVIYRLHAPPPTPNRTSKKMEYSANGVNSRSTADHPEEDNNPQTMHTLKHLTAEVRTKLSQ |
NCBI Accession | YP_115513.1 |
---|---|
Location | 423-1184 |
Gene Name | BV1 |
Protein Name | NSP protein |
Coding Region | ATGTATACTATGCGGTATAGACATGGAGCTCCTCTCTCTGTACGACGACCAATTTATAGACGGACTTATGTCCGTCGGTTCCCGGTTAGACGTCCTCCCGTCCGACGTCAGCTCTCGTTTTCCAACAAACCCGCTGATGATAAGATGACCAAACAGCGTCTCCATGAGAATCAATATGGCACACAGTATGCCATATCCAACAACACTTCTATCCCGTCTTTTGTGACATACCCACGCCTAGGTGGACCTTCTCCCAATAGGTCCAGGGATTACATGAAGCTGAACCGTCTGCGGTACAAGGGTACCGTTACCATAAACAACACCCAGCCCGATGTTACAATGTCTGGAGAAACCAAGATAGAGGGTGTATTCACAATGGCGATTGTGATGGACCGGAAACCACATGTTGGCCCATCTGGTTCGCTTCCCAAGTTTGAGGAGCTTTTTGGTGCAAATACCTTCAGTCATGGCAGTCTTGACATTGCGGCCCATTTGAAGGACCGGTACTATGTGCGTCACGTTTGTAAACGGGTTATATCTATGGAGAAGGACTCTACCATTTTGAACTTGACTGGGTCCATGAGTTTATCTTCATCACGATTCACGTGTTGGGCCTCGTTCAAGGATTTGAATGTTGATAGTTGTAATGGGGCGTACAGTAACGTCGCCAAGAACGCCATACTTGTATATTATTGTTGGATGTCGGACGAACCGTCACGTGCATCCACGTTTGTATCGTTTGATTTGGATTACTTGGGTTAA |
Protein Sequence | MYTMRYRHGAPLSVRRPIYRRTYVRRFPVRRPPVRRQLSFSNKPADDKMTKQRLHENQYGTQYAISNNTSIPSFVTYPRLGGPSPNRSRDYMKLNRLRYKGTVTINNTQPDVTMSGETKIEGVFTMAIVMDRKPHVGPSGSLPKFEELFGANTFSHGSLDIAAHLKDRYYVRHVCKRVISMEKDSTILNLTGSMSLSSSRFTCWASFKDLNVDSCNGAYSNVAKNAILVYYCWMSDEPSRASTFVSFDLDYLG |
NCBI Accession | YP_115514.1 |
---|---|
Location | 1246-2124 |
Gene Name | BC1 |
Protein Name | MP protein |
Coding Region | ATGGAATCACAATTAGCTCAAGCTCCTAGTTCTTTTAATTACATAGAATCACATAGGGACGAATATCGTCTGACTCATGACCTAACAGAGATTGTTCTACAGTTTCCGTCTACGGCGGAACAGTGGGGTGCGACTGTCAGGCGTCGATGCATGAAGATCGACCACTGCGTCATAGAGTACCGACAACAGGTACCGATTAACGCCACAGGGTCCGTCATAGTGGAGATTCACGACAAGCGCATGACGGATAACGAGTCCTTACAGGCGTCGTACACCTTTCCCATAAGGTGCAACATAGATCTGCACTATTTCTCCGCCTCTTTCTTCTCTCTGAAAGATCCCATCCCATGGAAGCTGTACTACAGGGTATCTGATACCAATGTACATCAGGGGACCCATTTCGCAAAATTCAAGGGCAAACTGAAGATGTCGACAGCAAAGCACTCTGTTGATGTCATATTCCGTTCCCCGACGGTAAAGATACTCTCCAAGCAGTTCACCGGCAAAGATATCGACTTTTCCCATGTGGACTACGGCAAGGTCGAGAGGAAGCTGGTGAAGTGCGAGTCCTCCAGTCGACTGGGCCTGCACTCGGCAATAGAATTAAGGCCTGGTGAATCATGGGCCACGCGTAGCTGTATTGGGCCTGATACCATGGAGACAGAATCCGAGGTGCACAACAGGAACCACCCGTATCGTGAACTCAACAGACTCAGCACAAGTATGCTGGATCCAGGGGACTCCGCCTCAATGATCGGTGCTTCCCGGGCTGAGTCCAACATAACACTTACTAGAGCCCAGTTGCAGGAACTAGTCAGTAGCACGGTCGAACATTGTATTAATCGTAATTGTACGCCCCATCAGGCGAAACCATTATAA |
Protein Sequence | MESQLAQAPSSFNYIESHRDEYRLTHDLTEIVLQFPSTAEQWGATVRRRCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASYTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQGTHFAKFKGKLKMSTAKHSVDVIFRSPTVKILSKQFTGKDIDFSHVDYGKVERKLVKCESSSRLGLHSAIELRPGESWATRSCIGPDTMETESEVHNRNHPYRELNRLSTSMLDPGDSASMIGASRAESNITLTRAQLQELVSSTVEHCINRNCTPHQAKPL |
1 |
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4 |
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Arif M, et al. Methods. 2020 Nov 1;183:43-49. doi: 10.1016/j.ymeth.2019.11.010. Epub 2019 Nov 20. PMID: 31759050 |
8 |
Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil. Macedo MA, et al. Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22. PMID: 31758274 |
9 |
Genetic diversity of begomoviruses in Pakistan captured through a vector based survey. Islam W, et al. Microb Pathog. 2018 May;118:91-97. doi: 10.1016/j.micpath.2018.03.019. Epub 2018 Mar 13. PMID: 29548695 |
10 |
Hernández-Zepeda C, et al. Virus Genes. 2007 Oct;35(2):369-77. doi: 10.1007/s11262-007-0080-5. Epub 2007 Feb 15. PMID: 17638064 |