Corchorus yellow vein mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000906695.1
Isolate India: Maharashtra
Release date 2015/2/22
Submitter Archana,K., Malathi,V.G.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_020473
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGGCCCTCGACCAATCATATCGCTCGCTCAAAGTTAAATAACGCTCCCGCGCACTATAAGTACTTGCTCAGCAAGTTTTTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAATAAAGATTGAATTTTATTACGTTTGAACTTTGTACATAAACTGTTTGCGTTAATACATTCCATAATACATGATCTACAGCCCTAATTACATTGTTGATACTAATTACACCCAAATTATCAATAAATTTCAACACTTGGGTCCTAAATACTCTTAAGAAACGACCAATCTGAAGGTGTGAGTTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATGATGTCTTGGTTCGACAGGAAAGGCCTGCTGTGATGGTCTGTCATCCTGAAATACAGGGGATTTGGAACCGTCCAGGTAAAGGCGCCATTCTCTGCTTGAGCTGCAGTGATGTACTCCCCGGTGCGTAAATCCATGGTTGTGGCAGTTTATGTTGAGGAAGTATGAACAGCCGCAGTTAAGGTCCACTCTCCTCCGTCTGAATTTCTTCTTGGCTATCCTGTGCTGAACCTTGATGGGTACCTGAGAACAGTGGCCTTCTGAGGGTGACGAAGGTTGCATTTCTTATAGCCCAGTTCTTCAGTGCCGCGTTCTTTTCTTGGTCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCGTGCTTTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCGATCACTATACTCACCGGTCTCAAGGGCCGCGCAGCGGCATGAACGACGTTATCGCACGCCCACTCTTCGAGTTCATCTGGAACTCGGTCGAAAGAAGAAGGAGAAAAAGGCGAAATATAGACCTCCATCGGAGGCGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAATACATAGTCTTTGGGTGCTAGTTCTCTAATGACGCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCTGCATAAGCGTCGTTTGCAGTCTGCTGGCCTCCTCTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCACTGATTCTTGCACTGGTATTTGCCCTCGAACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGATCTTGATGAATTTTTTATTAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTGAGAGAGCACTTGGGATAAGTTAGAAAATAATTCTTTGCGTTTATTTTAAATAGGCTCTTTGGAGGCATGGTCAATGGACACCGATTGACTCTTCCAAACCATTTACTCCTGCAATCGGTGTCTGGTGTCTTATTTATACCTGGACACCAAATGGCATAAGCGTAATTTAAAAAGATAGTTTCGAATTTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_007517187.1
Location 120-479
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAA
Protein Sequence MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVQCPCRCPYCPRHLKVSGVGQQAHEQEAEDIQNVQKSGCS

NCBI Accession YP_007517188.1
Location 280-1053
Gene Name AVI
Protein Name coat protein
Coding Region ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAA
Protein Sequence MPKRPLDMSISTPGWKVRRRLNFDSPYSARAAVPIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_007517189.1
Location 583-987
Gene Name AC5
Protein Name AC5
Coding Region ATGAGTACATGCCATATACAACATCAAAGCATTCTCACTATGATTCTCGTACTTGCCAGCCTCTTGCTGGTTATAGACAACATAATTATTAACCCTAACAAACTTCTTCACGAGAGCCTGTTCCTTGGACGCATACTGACCACCAGTAACCGTAGCATGCCACTTCCGAAGGACCTGATAACGATCCCTATGCATATTCTTGACAGTCGCGGTGCTCGGCTCGTTGTCGAACATGTTGAACACCTCCCCAAAATCTTGCGGCTTATCAACGGGACGACGATCACGAACGAGGAAGAACATAACACTGTTAGTGTGATTCTTGGTCTTGATGTTTTCGTCCATCCATATCTTTCCCAGAACATAAACAGACTTAACACAGAAACGCTTCCCTACCCTATGAGTTAG
Protein Sequence MSTCHIQHQSILTMILVLASLLLVIDNIIINPNKLLHESLFLGRILTTSNRSMPLPKDLITIPMHILDSRGARLVVEHVEHLPKILRLINGTTITNEEEHNTVSVILGLDVFVHPYLSQNINRLNTETLPYPMS

NCBI Accession YP_007517190.1
Location 1050-1454
Gene Name AC3
Protein Name replication enhancement protein ReP
Coding Region ATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAGGACCCAAGTGTTGAAATTTATTGATAATTTGGGTGTAATTAGTATCAACAATGTAATTAGGGCTGTAGATCATGTATTATGGAATGTATTAACGCAAACAGTTTATGTACAAAGTTCAAACGTAATAAAATTCAATCTTTATTAA
Protein Sequence MDLRTGEYITAAQAENGAFTWTVPNPLYFRMTDHHSRPFLSNQDIITARIQFNYNLRKALGIHQCFLTFRIWTNSHLQIGRFLRVFRTQVLKFIDNLGVISINNVIRAVDHVLWNVLTQTVYVQSSNVIKFNLY

NCBI Accession YP_007517191.1
Location 1195-1599
Gene Name AC2
Protein Name transcription activation protein TrAp
Coding Region ATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAACTGCGGCTGTTCATACTTCCTCAACATAAACTGCCACAACCATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MQPSSPSEGHCSQVPIKVQHRIAKKKFRRRRVDLNCGCSYFLNINCHNHGFTHRGVHHCSSSREWRLYLDGSKSPVFQDDRPSQQAFPVEPRHHNGKNTVQLQPEESTGDSPMFPNLPHLDELTPSDWSFLKSI

NCBI Accession YP_007517192.1
Location 1496-2053
Gene Name AC1
Protein Name REP
Coding Region ATGGAGGTCTATATTTCGCCTTTTTCTCCTTCTTCTTTCGACCGAGTTCCAGATGAACTCGAAGAGTGGGCGTGCGATAACGTCGTTCATGCCGCTGCGCGGCCCTTGAGACCGGTGAGTATAGTGATCGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCTTTGGGTCCACATAATTATCTTTGTGGCCATTTGGACTTAAGTCCAAAAGTGTACAGTAATGAAGCGTGGTACAACGTCATCGATGACGTCGATCCGCAATATCTAAAGCACGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGTATCCCAACAATCTTCCTCTGCAATCCAGGTCCAAATTCAAGCTATAAAGAATACTTGGACCAAGAAAAGAACGCGGCACTGAAGAACTGGGCTATAAGAAATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAA
Protein Sequence MEVYISPFSPSSFDRVPDELEEWACDNVVHAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPQYLKHEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDQEKNAALKNWAIRNATFVTLRRPLFSGTHQGSAQDSQEEIQTEESGP

NCBI Accession YP_007517193.1
Location 2122-2424
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATTTACACGTGCTCATCCAGTTCGAGGGCAAATACCAGTGCAAGAATCAGTGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACACTTGAGTGGGGAGAGTTCCAAATCGACGGCAGATCTGCAAGAGGAGGCCAGCAGACTGCAAACGACGCTTATGCAGCGGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGCGTCATTAGAGAACTAG
Protein Sequence MGNLIYTCSSSSRANTSARISDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETHLSGESSKSTADLQEEASRLQTTLMQRHLTQAVSQRLLASLEN

References More References in PubMed

1

Retraction: Infectious clone construction and pathogenicity confirmation of Cotton leaf curl Multan virus (CLCuMuV), Ramie mosaic virus (RamV) and Corchorus yellow vein Vietnam virus (CoYVV) by southern blot analysis.

PLOS ONE Editors.  PLoS One. 2023 Jun 14;18(6):e0286780. doi: 10.1371/journal.pone.0286780. eCollection 2023.

PMID: 37315010
2

Infectious clone construction and pathogenicity confirmation of Cotton leaf curl Multan virus (CLCuMuV), Ramie mosaic virus (RamV) and Corchorus yellow vein Vietnam virus (CoYVV) by southern blot analysis.

Arif M, et al.  PLoS One. 2021 May 14;16(5):e0251232. doi: 10.1371/journal.pone.0251232. eCollection 2021.

PMID: 33989327
3

Molecular analysis, infectivity and host range of Tomato leaf curl Karnataka virus associated with Corchorus yellow vein mosaic betasatellite.

Dokka N, et al.  Virus Res. 2021 Oct 2;303:198521. doi: 10.1016/j.virusres.2021.198521. Epub 2021 Jul 24.

PMID: 34314770
4

Identification of a monopartite begomovirus associated with yellow vein mosaic of Mentha longifolia in Saudi Arabia.

Sohrab SS, et al.  3 Biotech. 2018 Feb;8(2):92. doi: 10.1007/s13205-018-1120-7. Epub 2018 Jan 24.

PMID: 29430354
5

Molecular characterization and RSV Co-infection of Nicotiana benthamiana with three distinct begomoviruses.

Arif M, et al.  Methods. 2020 Nov 1;183:43-49. doi: 10.1016/j.ymeth.2019.11.010. Epub 2019 Nov 20.

PMID: 31759050
6

Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil.

Macedo MA, et al.  Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22.

PMID: 31758274
7

Molecular characterization and experimental host range of an isolate of Macroptilium golden mosaic virus that infects Wissadula amplissima in Jamaica.

Collins A, et al.  Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25.

PMID: 20347895
8

Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Oct;35(2):369-77. doi: 10.1007/s11262-007-0080-5. Epub 2007 Feb 15.

PMID: 17638064
9

Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia.

Fiallo-Olivé E, et al.  Arch Virol. 2012 Jan;157(1):141-6. doi: 10.1007/s00705-011-1123-8. Epub 2011 Oct 1.

PMID: 21964921
10

Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation.

Ha C, et al.  J Gen Virol. 2008 Jan;89(Pt 1):312-326. doi: 10.1099/vir.0.83236-0.

PMID: 18089756