Corchorus yellow vein mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000906695.1 |
| Isolate |
India: Maharashtra |
| Release date |
2015/2/22 |
| Submitter |
Archana,K., Malathi,V.G. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGGCCCTCGACCAATCATATCGCTCGCTCAAAGTTAAATAACGCTCCCGCGCACTATAAGTACTTGCTCAGCAAGTTTTTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAATAAAGATTGAATTTTATTACGTTTGAACTTTGTACATAAACTGTTTGCGTTAATACATTCCATAATACATGATCTACAGCCCTAATTACATTGTTGATACTAATTACACCCAAATTATCAATAAATTTCAACACTTGGGTCCTAAATACTCTTAAGAAACGACCAATCTGAAGGTGTGAGTTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATGATGTCTTGGTTCGACAGGAAAGGCCTGCTGTGATGGTCTGTCATCCTGAAATACAGGGGATTTGGAACCGTCCAGGTAAAGGCGCCATTCTCTGCTTGAGCTGCAGTGATGTACTCCCCGGTGCGTAAATCCATGGTTGTGGCAGTTTATGTTGAGGAAGTATGAACAGCCGCAGTTAAGGTCCACTCTCCTCCGTCTGAATTTCTTCTTGGCTATCCTGTGCTGAACCTTGATGGGTACCTGAGAACAGTGGCCTTCTGAGGGTGACGAAGGTTGCATTTCTTATAGCCCAGTTCTTCAGTGCCGCGTTCTTTTCTTGGTCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCGTGCTTTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCGATCACTATACTCACCGGTCTCAAGGGCCGCGCAGCGGCATGAACGACGTTATCGCACGCCCACTCTTCGAGTTCATCTGGAACTCGGTCGAAAGAAGAAGGAGAAAAAGGCGAAATATAGACCTCCATCGGAGGCGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAATACATAGTCTTTGGGTGCTAGTTCTCTAATGACGCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCTGCATAAGCGTCGTTTGCAGTCTGCTGGCCTCCTCTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCACTGATTCTTGCACTGGTATTTGCCCTCGAACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGATCTTGATGAATTTTTTATTAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTGAGAGAGCACTTGGGATAAGTTAGAAAATAATTCTTTGCGTTTATTTTAAATAGGCTCTTTGGAGGCATGGTCAATGGACACCGATTGACTCTTCCAAACCATTTACTCCTGCAATCGGTGTCTGGTGTCTTATTTATACCTGGACACCAAATGGCATAAGCGTAATTTAAAAAGATAGTTTCGAATTTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_007517187.1
|
|
Location
|
120-479 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAA |
|
Protein Sequence
|
MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVQCPCRCPYCPRHLKVSGVGQQAHEQEAEDIQNVQKSGCS |
|
NCBI Accession
|
YP_007517188.1
|
|
Location
|
280-1053 |
|
Gene Name
|
AVI |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAA |
|
Protein Sequence
|
MPKRPLDMSISTPGWKVRRRLNFDSPYSARAAVPIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_007517189.1
|
|
Location
|
583-987 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 |
|
Coding Region
|
ATGAGTACATGCCATATACAACATCAAAGCATTCTCACTATGATTCTCGTACTTGCCAGCCTCTTGCTGGTTATAGACAACATAATTATTAACCCTAACAAACTTCTTCACGAGAGCCTGTTCCTTGGACGCATACTGACCACCAGTAACCGTAGCATGCCACTTCCGAAGGACCTGATAACGATCCCTATGCATATTCTTGACAGTCGCGGTGCTCGGCTCGTTGTCGAACATGTTGAACACCTCCCCAAAATCTTGCGGCTTATCAACGGGACGACGATCACGAACGAGGAAGAACATAACACTGTTAGTGTGATTCTTGGTCTTGATGTTTTCGTCCATCCATATCTTTCCCAGAACATAAACAGACTTAACACAGAAACGCTTCCCTACCCTATGAGTTAG |
|
Protein Sequence
|
MSTCHIQHQSILTMILVLASLLLVIDNIIINPNKLLHESLFLGRILTTSNRSMPLPKDLITIPMHILDSRGARLVVEHVEHLPKILRLINGTTITNEEEHNTVSVILGLDVFVHPYLSQNINRLNTETLPYPMS |
|
NCBI Accession
|
YP_007517190.1
|
|
Location
|
1050-1454 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancement protein ReP |
|
Coding Region
|
ATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAGGACCCAAGTGTTGAAATTTATTGATAATTTGGGTGTAATTAGTATCAACAATGTAATTAGGGCTGTAGATCATGTATTATGGAATGTATTAACGCAAACAGTTTATGTACAAAGTTCAAACGTAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDLRTGEYITAAQAENGAFTWTVPNPLYFRMTDHHSRPFLSNQDIITARIQFNYNLRKALGIHQCFLTFRIWTNSHLQIGRFLRVFRTQVLKFIDNLGVISINNVIRAVDHVLWNVLTQTVYVQSSNVIKFNLY |
|
NCBI Accession
|
YP_007517191.1
|
|
Location
|
1195-1599 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcription activation protein TrAp |
|
Coding Region
|
ATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAACTGCGGCTGTTCATACTTCCTCAACATAAACTGCCACAACCATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQPSSPSEGHCSQVPIKVQHRIAKKKFRRRRVDLNCGCSYFLNINCHNHGFTHRGVHHCSSSREWRLYLDGSKSPVFQDDRPSQQAFPVEPRHHNGKNTVQLQPEESTGDSPMFPNLPHLDELTPSDWSFLKSI |
|
NCBI Accession
|
YP_007517192.1
|
|
Location
|
1496-2053 |
|
Gene Name
|
AC1 |
|
Protein Name
|
REP |
|
Coding Region
|
ATGGAGGTCTATATTTCGCCTTTTTCTCCTTCTTCTTTCGACCGAGTTCCAGATGAACTCGAAGAGTGGGCGTGCGATAACGTCGTTCATGCCGCTGCGCGGCCCTTGAGACCGGTGAGTATAGTGATCGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCTTTGGGTCCACATAATTATCTTTGTGGCCATTTGGACTTAAGTCCAAAAGTGTACAGTAATGAAGCGTGGTACAACGTCATCGATGACGTCGATCCGCAATATCTAAAGCACGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGTATCCCAACAATCTTCCTCTGCAATCCAGGTCCAAATTCAAGCTATAAAGAATACTTGGACCAAGAAAAGAACGCGGCACTGAAGAACTGGGCTATAAGAAATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAA |
|
Protein Sequence
|
MEVYISPFSPSSFDRVPDELEEWACDNVVHAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPQYLKHEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDQEKNAALKNWAIRNATFVTLRRPLFSGTHQGSAQDSQEEIQTEESGP |
|
NCBI Accession
|
YP_007517193.1
|
|
Location
|
2122-2424 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGGAACCTCATTTACACGTGCTCATCCAGTTCGAGGGCAAATACCAGTGCAAGAATCAGTGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACACTTGAGTGGGGAGAGTTCCAAATCGACGGCAGATCTGCAAGAGGAGGCCAGCAGACTGCAAACGACGCTTATGCAGCGGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGCGTCATTAGAGAACTAG |
|
Protein Sequence
|
MGNLIYTCSSSSRANTSARISDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETHLSGESSKSTADLQEEASRLQTTLMQRHLTQAVSQRLLASLEN |