Corchorus yellow vein Cuba virus


Basic Information

Genus Begomovirus
Isolate Cuba
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

MF773912
ACCGGATGGCCGCGCCCCCCCCCCCCTTGGTGCGCTCGTGGTCCAATCACATCGCGCTTGGCGAGCTTAGATATTTGAAACAACTTAGTGCGCAAGTTGTGAGCGTCTTTATAAATTAAAGACATTCTGGGCCACCTTCTTTAGTTCAAAATGCCTAAGCGCGATGCCCCGTGGCGCGCTATGGCTGGGACCTCAAAGGTTAGCCGGGCTGCTAATTATTCTCCCCGTGCAGGTAATGGCCCGAAATTGAACAGGGCCTCAGAGTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATTTATCGCACTTTGAGGTCCCCTGATGTGCCCAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCACATGTAGGTAAGGTAATGTGTATTTCTGATGTGACACGTGGTAACGGCATTACCCACCGTGTGGGTAAGCGTTTCTGTGTTAAGTCTGTTTACATTTTAGGGAAGGTCTGGATGGACGACAACATCAAGCTCAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCCGTGATCGGAGACCGTATGGAACTCCCATGGACTTTGGCCAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACCGTTAAGAACGATCTCCGTGATCGTTATCAGGTCATGCACAGGTTCTATGCCAAAGTCACGGGTGGACAGTATGCCAGCAACGAGCAGTCTATAGTCAGGCGATTCTGGAAAGTCAACAACCACGTGGTGTATAACCACCAGGAAGCTGGCAAGTACGAGAATCATACGGAGAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATCCGGATCTATTTTTATGATTCGATCAGCAATTAATAAAATTTGAATTTTATTTCATGATCCTCAAGTACATAATTGACATATGATTTAGCTGTTGCGAAACGAACAGCCCTAATTACATTATTTAACCCAATTACACCTAATTGGTCTAAATACATATTAACTAACTGCCTAAACCTAATTAAATAAGTCAGCCCAGAAGCTGTCAGACCACTGGTCCAGACTTGGAAGTTCAGGAAGGCTTTGTGAAGACCCAGCCTCTTCCTGAGGTTGTGGTTGAACCTTATCTGGACGTGGTAGATCCTTGTCCTGGAGTACATTGGATCCTCTATCCTGATGATCTTGAAATAGAGGGGATTTGGCACCTCCCAGATAAAAACGGAACTCTCTGCCTGATCCACAGTGATGTTGACCCCTGTGCGTGAATCCATGGCCCGCGCAACTGACGTGGAAGAATATGGAACAGCCGCAGTTCAGGTCTACTCGTCTTCGCCTGATTGGCCTACGCTTGGCTATCCTGTGCTGTGCTTTGATAGAGGGGGCCGTCGAGGAAGATGAATTTTGCATTTTGAAGTGTCCACGACTTCAGCCCTGCATTTTCCTCCTTTTCCAGGAAATCTTTATAACTGGCCCCCTCCCCTGGATTGCACAGCACGATTGATGGGATCCCGCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAGTTGGGGCTGACATCATCAATGACGTTATACTCAACGTCATTCGAGTAAACCCTAGAATTGAAATCGAGGTGTCCACTCAGATAATTGTGTCGCCCCAACGTCCTGGCCCACATTGTTTTGCCCGTCCGACTATCACCTTCTATGATGATACTAACAGGTCTGACAGGCCGCGCAGCGGCATCCATGGCAAAATAATCATCCGCCCACTCTTGCATTTCTTCCGGGACGTTCGTGAAGGAAGAAAGTCGGAACGGAGGGACCCATGGTTCCGGAGCCTTTTGAAAGATCCGCTGTGCATTTGCGATCAGGTTATGGTGTTGGAGGAAGAAATGTTGAGGCTGCTCCTCCTTAATTATTTGTAGAGCCTCTTCTGCAGATGAGGCATTCAACGCCTTGGCATAGGTGTCGTTAGCCGTCTGGCAGCCTCCCCTAGCAGATCTCCCGTCGATCTGGAATTCTCCCCATTCCAGTGTATCTCCGTCCTTATCGATATAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGATGGGGAGACCAGATCGAAGAATCTGTTATTCTGGCATTTGAACTTTCCCTCGAACTGTATAAGCACATGGAGATGCGGTTCCCCATTCTCGTGGAGCTCCCTGCAGATCTTGACGAACTTCTTGTTCACCGGAGTTTCTAGGTTTTGTATCTGTGAAAGTGCTTCTTCTTTGGTCAGGGAGCACTTTGGATAAGTTATGAAATAATTTTTGGCATTTACTAAGAAACGTTTAACTGATGGCATTTTGGTAATAATATGGGTGAGACCCGATTGCTCCCCTCTCAAACTTGCTCATGCAATCGGGGAATGGGTCTCAATTTATACTAGAACCCTCAATAGAACTTTCAATCGTGTTCGAACACGTGGCGGCCATCCGAATAATATT

MF773902
ACTGGATGGCCGCGAAAATTTGGAGTCCTACTTTAGCTGGCCGCGCTATTTTGGTGTTCGGCCCAGGCCCATTGGCGCTGTTCTTGTTGCTATTTTTGGAGTCATTATTTCCATCCGTCTTTTCCCTGGTGCGTCGCCTGGGCCCCTCGCTCACTTTGTATTGTACCTCCCATTTAATTTAAAGGGGCTTTAAATTAAATCAGTCTCGTCTTTATCCAATTTCGAGATTTGGCCTGTCAGGTGTAGTTACAGTCGACGTGGTCGATTTTGGACCTTGTTGCAATGCTTAAGTCGAAATTGAACTACTGTTATACTATACATCTTACGTGGACCAGTGAGAATCAACCTGTCGAGCCAAACTAAACATTTGTTTAGTTGATGGACTTTTATATATTGGGATGTTAGTACTCGTTTGGTTATCCATATCTGAACATGTTCTCGTCCAGATATCGACGTGGTTCTTTTTATAATCAACCACGTGGTTATCCTCGTAACCACGTGTTTAGGAGACAACCCTTTGTTAGGCGTCATGAGGGCAAGCGTCGACATGTTCAGCATGGGAAAAAACCTGACGAGCCCAAGTTGACAAGCCAAACCATACATGAGAATCAGTATGGCCCAGAGTTATCCATGGCCCATAACACATCCGTTTCGACCTTCATTAGCTACCCTGATATGGGTAAGTCCTTGCCTAATCGATCCAGGTCATATATCAAGTTGAAACGGCTTCGTTTCAAGGGAACTGTCAAAGTCGAACGTGTTCATTCCGATGTGAACATGGTAGGTACAACACCTAAGACTGAAGGTGTTTTCTCCTTGGTTCTAGTGGTCGATCGTAAACCTCACATCGGTCCTTCTGGTGGTCTTCCCAGTTTTGACGAATTATTCGGCGCAAGGATCCATAGTCATGGTAACCTGGCTATAATTCCGGCTATGAAGGAGCGGTTCTACTTGTGCCACGTGTTGAAGCGTGTTTTATCTGTGGAGAAGGATAGTCTGATGGTCGACATTGAAGGAACCGCTATCTTATCTAACAGGCGTTTTAATTGTTGGTCCAGTTTTAAGGATCTCGAGGTCGAGACATGTAAGGGTGTCTATGCAAACATAAGTAAGAACGCCCTGTTAGTTTATTACTGTTGGATGTCCGATACCATGTCTAAAGCATCCACATATGTATCATATGACCTCGATTATATTGGCTGAATAAACATTTATTATTAATGCAAAATTTATACAAATTTTGTTTAGGGGACAATTCTAACTATTTATCGAGTGATTTGATTTGAGAGGAACTACAATTACTCTTAATACATTCTTGGACCGTTGACCTGACAAGCTCGTTTAATTGGGCTATAGACATTGTTATGTTGGATTGGGCCCTGCCTGCTCCCACTATGGAGGCTGATTCTCCTGGATCCAGGACGCTGGTTCCTAACCTGTTGATATCTTTATAAGGATGCATCTCGTTCTCGATCTCTGAGTCAGCGTCCGATGGACCTACTCCAATTGTGCTTCTGGAAGCCCATGACTCTCCGGGTTTGATTTCAATTGGGCCTCTGAGCCCAAGCCTTGACATTGATGCACATCTGATGGGCTTCCTCTCCCATCTCCCGTAGTCCACGTGCGAGAAGTCCACATCCTTCTCGGTGAATTGCTTGGATAATATCTTGACGGTCGGTGCCTTAAATGGGATATCCACCGAGTGTTTGGCCGTGGACAATTTCAGCTTCCCTTTGAACTTGGCGAAGTGGGTTCTCTGGTGGACGTTCGTATCAGAAACTCTGTAATAGAGTTTCCACGGGATTGGGTCTTTCAAGGAGAAGAAGGAAGCTGAGAAGTAGTGGAGATCTATGTTACATCTGATCGGGAAAGTCCATGACGCCTGTAATGACTCATTGTCCGTCATTCTTTGGTCGTGGATCTCCACTATCACAGTCCCGGCGGCGTTGATCGGAACCTGTTGCCTGTACTCGATTACGCAGTGATCGATCTTCATACAGCTCCGACTGAGTCTTGCCGTGAATTGAGCCGCCGTTGACGGGAACTGCAAGATAATCTCAGTTAGGTCATGAGAAAGCTGATATTCATCTCTTTGAGACTCTATGTAGTTGAAGGCATGCGGTGGATTTGCTAACTGAGAATTCATTTATGAAAATATGGTCGCGCTAGCGAGATCGGTGTAATTATTTGAAGACTATGTCAAGAGCTTGATCTAACACAGGGTGAATTTAAAATCTGGGAAAAACTCTTTTTGTGGAAAAGAAGAGTACCGAGGAAGGAGAAGATGAAAATCTAGCTCTGACAAGTTTTGAGCATCTTAGATGCCTGACAGGGTTTATATAGAGACCCACGTGGTCTGGTTTCAGTTTGAGAAGGGATTCTTATGGCATTCTTGTAATAATAGGACGAGACACCAGGGGGAGCTCTCAACTTCTGTCATATTTTTTGGTGTCTTGGTGTCATATATATACATAAAGGCTCTAGGAGGATCCTATAGACACCAGGGGCAAAAGCGGCCATCCTATAATATT

Gene Information

NCBI Accession AXU39865.1
Location 151-906
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATGCCCCGTGGCGCGCTATGGCTGGGACCTCAAAGGTTAGCCGGGCTGCTAATTATTCTCCCCGTGCAGGTAATGGCCCGAAATTGAACAGGGCCTCAGAGTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATTTATCGCACTTTGAGGTCCCCTGATGTGCCCAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCACATGTAGGTAAGGTAATGTGTATTTCTGATGTGACACGTGGTAACGGCATTACCCACCGTGTGGGTAAGCGTTTCTGTGTTAAGTCTGTTTACATTTTAGGGAAGGTCTGGATGGACGACAACATCAAGCTCAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCCGTGATCGGAGACCGTATGGAACTCCCATGGACTTTGGCCAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACCGTTAAGAACGATCTCCGTGATCGTTATCAGGTCATGCACAGGTTCTATGCCAAAGTCACGGGTGGACAGTATGCCAGCAACGAGCAGTCTATAGTCAGGCGATTCTGGAAAGTCAACAACCACGTGGTGTATAACCACCAGGAAGCTGGCAAGTACGAGAATCATACGGAGAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATCCGGATCTATTTTTATGATTCGATCAGCAATTAA
Protein Sequence MPKRDAPWRAMAGTSKVSRAANYSPRAGNGPKLNRASEWVNRPMYRKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQSIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN

NCBI Accession AXU39868.1
Location 903-1301
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGTCAACATCACTGTGGATCAGGCAGAGAGTTCCGTTTTTATCTGGGAGGTGCCAAATCCCCTCTATTTCAAGATCATCAGGATAGAGGATCCAATGTACTCCAGGACAAGGATCTACCACGTCCAGATAAGGTTCAACCACAACCTCAGGAAGAGGCTGGGTCTTCACAAAGCCTTCCTGAACTTCCAAGTCTGGACCAGTGGTCTGACAGCTTCTGGGCTGACTTATTTAATTAGGTTTAGGCAGTTAGTTAATATGTATTTAGACCAATTAGGTGTAATTGGGTTAAATAATGTAATTAGGGCTGTTCGTTTCGCAACAGCTAAATCATATGTCAATTATGTACTTGAGGATCATGAAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGVNITVDQAESSVFIWEVPNPLYFKIIRIEDPMYSRTRIYHVQIRFNHNLRKRLGLHKAFLNFQVWTSGLTASGLTYLIRFRQLVNMYLDQLGVIGLNNVIRAVRFATAKSYVNYVLEDHEIKFKFY

NCBI Accession AXU39867.1
Location 1048-1437
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAAAATTCATCTTCCTCGACGGCCCCCTCTATCAAAGCACAGCACAGGATAGCCAAGCGTAGGCCAATCAGGCGAAGACGAGTAGACCTGAACTGCGGCTGTTCCATATTCTTCCACGTCAGTTGCGCGGGCCATGGATTCACGCACAGGGGTCAACATCACTGTGGATCAGGCAGAGAGTTCCGTTTTTATCTGGGAGGTGCCAAATCCCCTCTATTTCAAGATCATCAGGATAGAGGATCCAATGTACTCCAGGACAAGGATCTACCACGTCCAGATAAGGTTCAACCACAACCTCAGGAAGAGGCTGGGTCTTCACAAAGCCTTCCTGAACTTCCAAGTCTGGACCAGTGGTCTGACAGCTTCTGGGCTGACTTATTTAATTAG
Protein Sequence MQNSSSSTAPSIKAQHRIAKRRPIRRRRVDLNCGCSIFFHVSCAGHGFTHRGQHHCGSGREFRFYLGGAKSPLFQDHQDRGSNVLQDKDLPRPDKVQPQPQEEAGSSQSLPELPSLDQWSDSFWADLFN

NCBI Accession AXU39866.1
Location 1373-2434
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCATCAGTTAAACGTTTCTTAGTAAATGCCAAAAATTATTTCATAACTTATCCAAAGTGCTCCCTGACCAAAGAAGAAGCACTTTCACAGATACAAAACCTAGAAACTCCGGTGAACAAGAAGTTCGTCAAGATCTGCAGGGAGCTCCACGAGAATGGGGAACCGCATCTCCATGTGCTTATACAGTTCGAGGGAAAGTTCAAATGCCAGAATAACAGATTCTTCGATCTGGTCTCCCCATCCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGGAGATCTGCTAGGGGAGGCTGCCAGACGGCTAACGACACCTATGCCAAGGCGTTGAATGCCTCATCTGCAGAAGAGGCTCTACAAATAATTAAGGAGGAGCAGCCTCAACATTTCTTCCTCCAACACCATAACCTGATCGCAAATGCACAGCGGATCTTTCAAAAGGCTCCGGAACCATGGGTCCCTCCGTTCCGACTTTCTTCCTTCACGAACGTCCCGGAAGAAATGCAAGAGTGGGCGGATGATTATTTTGCCATGGATGCCGCTGCGCGGCCTGTCAGACCTGTTAGTATCATCATAGAAGGTGATAGTCGGACGGGCAAAACAATGTGGGCCAGGACGTTGGGGCGACACAATTATCTGAGTGGACACCTCGATTTCAATTCTAGGGTTTACTCGAATGACGTTGAGTATAACGTCATTGATGATGTCAGCCCCAACTATCTAAAGCTAAAGCACTGGAAGGAATTGATTGGGGCCCAAAAGGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGCGGGATCCCATCAATCGTGCTGTGCAATCCAGGGGAGGGGGCCAGTTATAAAGATTTCCTGGAAAAGGAGGAAAATGCAGGGCTGAAGTCGTGGACACTTCAAAATGCAAAATTCATCTTCCTCGACGGCCCCCTCTATCAAAGCACAGCACAGGATAGCCAAGCGTAG
Protein Sequence MPSVKRFLVNAKNYFITYPKCSLTKEEALSQIQNLETPVNKKFVKICRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQTANDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLIANAQRIFQKAPEPWVPPFRLSSFTNVPEEMQEWADDYFAMDAAARPVRPVSIIIEGDSRTGKTMWARTLGRHNYLSGHLDFNSRVYSNDVEYNVIDDVSPNYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENAGLKSWTLQNAKFIFLDGPLYQSTAQDSQA

NCBI Accession AXU39869.1
Location 2020-2277
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCGCATCTCCATGTGCTTATACAGTTCGAGGGAAAGTTCAAATGCCAGAATAACAGATTCTTCGATCTGGTCTCCCCATCCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGGAGATCTGCTAGGGGAGGCTGCCAGACGGCTAACGACACCTATGCCAAGGCGTTGA
Protein Sequence MGNRISMCLYSSRESSNARITDSSIWSPHPGQHISIQTYRELNPAPMSSPISIRTEIHWNGENSRSTGDLLGEAARRLTTPMPRR

References More References in PubMed

1

Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia.

Fiallo-Olivé E, et al.  Arch Virol. 2012 Jan;157(1):141-6. doi: 10.1007/s00705-011-1123-8. Epub 2011 Oct 1.

PMID: 21964921

2

Molecular and Biological Characterization of a New World Mono-/Bipartite Begomovirus/Deltasatellite Complex Infecting Corchorus siliquosus.

Fiallo-Olivé E, et al.  Front Microbiol. 2020 Jul 23;11:1755. doi: 10.3389/fmicb.2020.01755. eCollection 2020.

PMID: 32793176