Clerodendron yellow mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000873145.1
Isolate India
Release date 2015/2/13
Submitter Sivalingam,P.N., Satheesh,V., John,P., Chandramohan,S., Malathi,V.G.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_009451
ACCGGATGGCAACGGCCCCGCGTGTGGGACCCACCACTAACCAATGAAAACGCTCCCTGAAAGCTACGTTATCTTGATTTTTCGTTATTTAACACGTGTCGTGTGAATATTGGTTGCATCATGTGGGATCCTATCGTGAACGATCTACCTGAAACCGTACATGGGTTTCGTTCTATGCTTGCAATCAAGTATCTACAGGCTGTAGAAAATACGTATTCTCCGGATACGCTGGGATACGATCTTGTACGTGATTTGATATCTGTTCTACGTGCAAGAAATTATGTCGAAGCGACCAGGAGATATCATAATTTCCACGCCCGCATCAAAGGTGCGACGACGTTTGAACTTCGAAAGCCCATTTGCCAACCGTGCCATTGCCCCCATTGTGGGCGTCACAAGAAGACAGGCCTGGGTCAACAGGCCCACGAACAGGAAGCCCAAATGGTATCGAATTTACAAAAGCCCAGATGTGCCTAGGGGCTGTGAAGGCCCATGCAAGGTCCAATCATTCGAGTCCAGACATGATATATCTCATATTGGCAAGGTGATGTGCGTAAGCGATGTCACACGTGGCATTGGTCTTACTCATCGAGTTGGCAAGAGATTTTGTGTAAAATCTGTGTATGTTTTGGGAAAGATCTGGATGGATGAAAACATAAAGACTAAGAACCACACTAATAGTGTGATGTTCTTTTTGGTTCGTGATCGGAGACCAATCGACAAGCCACAAGATTTTGGTGACGTTTTTAATATGTTTGATAATGAGCCCAGTACGGCAACTGTGAAGAACGTTAATCGCGATCGATATCAGGTTTTACGTAAGTGGTATCGGACGGTCACTGGTGGTCAGTACGCGTCTAAGGAGCAGGCATTAGTTAGGAGATTTATTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAAGCTGGGAAATACGAGAATCATACTGAGAACGCTCTTATGTTGTATATGGCATGCACTCATGCCTCTAACCCCGTGTATGCTACTCTGAAGATACGGATATATTTCTATGATTCTGTATCAAATTAATACAAAAGAAATTTTATTTCATGAGAGATCTCAACATCAATCGTGTTGTTTATTACATTGTACAATACATGATCTACAGCCTTAAACACGTTATTAATACAGATAACACCTAAATTATCTAAATAACGCAAAACTTGGGTCCTAAAGACCCGTAAGAAACGCCCAGTCTGAGGAGTTAAACTCGTCCAGATCCGGAAGGTTAGCCAACATTTGTGAAGTCCCAGTGCTCTCCTCAGGTTGTGGTTGAACCGGATCTGGATTGTTATTATGTCGTGGTTCCGGAAGAATGGTCGGTCCAGGTGGCTTAGGATCCTGAAATAGAGGGGATTTGGAACCTCCCAGATATACACGCCATTCATTGCTTGAGCTGCAGTGATGGACTCCCCTGTGCGTGAATCCATGGTTGTGACAGTTGAGGCTGACGTAATACGAGCAGCCGCAGTTAAGGTCCACTCGTTTTCTGCGGAATGCTCTCCTCTTGGCTATTCTGTGTTGGACCTTGATTGGTACCTGAGAAGAGTGGCTCTTGGAGGGTGATGAATTTTGCATTCTTGATGGCCCACTGCTTGAGTGCAGAATTCTTTTCTTCGTCCAAGAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTTGATTGCCAATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTCAAATAATGCGGATCTACGTCATCAATGACGTTATACCAAGCATCGTTTGAATAAATTTTAGGGCTTAAATCCAAATGCCCACATAAATAATTATGTGGGCCTAATGATCTGGCCCATAAAGTCTTCCCTGTCCGACTATCGCCCTCGACGACAATACTATTAGGTCTATATGGCCGCGCAGCGGCACTCTTCACATTCTCAGACACCCACTCTTCTAACTCCTCAGGGACTCTATCAAACGAAGAAGACAAAAAAGGACTAACATAAACCTCTAATGGAGGTGCAAAAATCCTATCTAAATTTGATTTTAAATTATGATACTGGAAAATAAAATCTCTTGGGAGTTTCTCCCTAATAACATTTAAAGCAGCTTCAGCAGACCCAGAATTTAATGCCTCAGCTGCAGCATCGTTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAATCGACCCCATTCGACGTAATCTCCGTCCTTCTCGATGTATCTCTTGACATCAGAGCTGGATCTAGCTCCCTGGATGTGCGCATGGAATTGGGAGGAGGTGTTGGGATGAGTGACATCGAAATGTCTCTCATTTCGGAACTTGGCTTTACCCTTGAATTGTATGAGAGCATGGAGATGCAGAGACCCATCTCTGTGTTTCTCTTGTGCAACCCTAATGAACAGTTTCTCAGATGGACATGAAATGTTTTTAATGAGCTCGAGCATCTGTTCTTTTGGAATGGGGCATTTTGAATAAGTGAGGAAAATGTTTTTAGCGCTAACTGAAAACCTATTTATGCGAGGCATGTTTGACCGGAAGTGTCCCCAATTGACCACCCTCTCTAAAACTCAGGGAATTGGGGACACTGGGGACGCATTTATACTAGTGTCCCCAAATGGCATAATCGTAATTTTTGGATCTGAAATTCAAATCTGGCTCGCCACGTGGACCTCACCGTTGCCATCCGATTATAATATT

Gene Information

NCBI Accession YP_001210299.1
Location 121-477
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGATCCTATCGTGAACGATCTACCTGAAACCGTACATGGGTTTCGTTCTATGCTTGCAATCAAGTATCTACAGGCTGTAGAAAATACGTATTCTCCGGATACGCTGGGATACGATCTTGTACGTGATTTGATATCTGTTCTACGTGCAAGAAATTATGTCGAAGCGACCAGGAGATATCATAATTTCCACGCCCGCATCAAAGGTGCGACGACGTTTGAACTTCGAAAGCCCATTTGCCAACCGTGCCATTGCCCCCATTGTGGGCGTCACAAGAAGACAGGCCTGGGTCAACAGGCCCACGAACAGGAAGCCCAAATGGTATCGAATTTACAAAAGCCCAGATGTGCCTAG
Protein Sequence MWDPIVNDLPETVHGFRSMLAIKYLQAVENTYSPDTLGYDLVRDLISVLRARNYVEATRRYHNFHARIKGATTFELRKPICQPCHCPHCGRHKKTGLGQQAHEQEAQMVSNLQKPRCA

NCBI Accession YP_001210300.1
Location 281-1051
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGGAGATATCATAATTTCCACGCCCGCATCAAAGGTGCGACGACGTTTGAACTTCGAAAGCCCATTTGCCAACCGTGCCATTGCCCCCATTGTGGGCGTCACAAGAAGACAGGCCTGGGTCAACAGGCCCACGAACAGGAAGCCCAAATGGTATCGAATTTACAAAAGCCCAGATGTGCCTAGGGGCTGTGAAGGCCCATGCAAGGTCCAATCATTCGAGTCCAGACATGATATATCTCATATTGGCAAGGTGATGTGCGTAAGCGATGTCACACGTGGCATTGGTCTTACTCATCGAGTTGGCAAGAGATTTTGTGTAAAATCTGTGTATGTTTTGGGAAAGATCTGGATGGATGAAAACATAAAGACTAAGAACCACACTAATAGTGTGATGTTCTTTTTGGTTCGTGATCGGAGACCAATCGACAAGCCACAAGATTTTGGTGACGTTTTTAATATGTTTGATAATGAGCCCAGTACGGCAACTGTGAAGAACGTTAATCGCGATCGATATCAGGTTTTACGTAAGTGGTATCGGACGGTCACTGGTGGTCAGTACGCGTCTAAGGAGCAGGCATTAGTTAGGAGATTTATTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAAGCTGGGAAATACGAGAATCATACTGAGAACGCTCTTATGTTGTATATGGCATGCACTCATGCCTCTAACCCCGTGTATGCTACTCTGAAGATACGGATATATTTCTATGATTCTGTATCAAATTAA
Protein Sequence MSKRPGDIIISTPASKVRRRLNFESPFANRAIAPIVGVTRRQAWVNRPTNRKPKWYRIYKSPDVPRGCEGPCKVQSFESRHDISHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPIDKPQDFGDVFNMFDNEPSTATVKNVNRDRYQVLRKWYRTVTGGQYASKEQALVRRFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_001210301.1
Location 1048-1452
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAGTCCATCACTGCAGCTCAAGCAATGAATGGCGTGTATATCTGGGAGGTTCCAAATCCCCTCTATTTCAGGATCCTAAGCCACCTGGACCGACCATTCTTCCGGAACCACGACATAATAACAATCCAGATCCGGTTCAACCACAACCTGAGGAGAGCACTGGGACTTCACAAATGTTGGCTAACCTTCCGGATCTGGACGAGTTTAACTCCTCAGACTGGGCGTTTCTTACGGGTCTTTAGGACCCAAGTTTTGCGTTATTTAGATAATTTAGGTGTTATCTGTATTAATAACGTGTTTAAGGCTGTAGATCATGTATTGTACAATGTAATAAACAACACGATTGATGTTGAGATCTCTCATGAAATAAAATTTCTTTTGTATTAA
Protein Sequence MDSRTGESITAAQAMNGVYIWEVPNPLYFRILSHLDRPFFRNHDIITIQIRFNHNLRRALGLHKCWLTFRIWTSLTPQTGRFLRVFRTQVLRYLDNLGVICINNVFKAVDHVLYNVINNTIDVEISHEIKFLLY

NCBI Accession YP_001210302.1
Location 1193-1600
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAAAATTCATCACCCTCCAAGAGCCACTCTTCTCAGGTACCAATCAAGGTCCAACACAGAATAGCCAAGAGGAGAGCATTCCGCAGAAAACGAGTGGACCTTAACTGCGGCTGCTCGTATTACGTCAGCCTCAACTGTCACAACCATGGATTCACGCACAGGGGAGTCCATCACTGCAGCTCAAGCAATGAATGGCGTGTATATCTGGGAGGTTCCAAATCCCCTCTATTTCAGGATCCTAAGCCACCTGGACCGACCATTCTTCCGGAACCACGACATAATAACAATCCAGATCCGGTTCAACCACAACCTGAGGAGAGCACTGGGACTTCACAAATGTTGGCTAACCTTCCGGATCTGGACGAGTTTAACTCCTCAGACTGGGCGTTTCTTACGGGTCTTTAG
Protein Sequence MQNSSPSKSHSSQVPIKVQHRIAKRRAFRRKRVDLNCGCSYYVSLNCHNHGFTHRGVHHCSSSNEWRVYLGGSKSPLFQDPKPPGPTILPEPRHNNNPDPVQPQPEESTGTSQMLANLPDLDEFNSSDWAFLTGL

NCBI Accession YP_001210303.1
Location 1494-2588
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGCCTCGCATAAATAGGTTTTCAGTTAGCGCTAAAAACATTTTCCTCACTTATTCAAAATGCCCCATTCCAAAAGAACAGATGCTCGAGCTCATTAAAAACATTTCATGTCCATCTGAGAAACTGTTCATTAGGGTTGCACAAGAGAAACACAGAGATGGGTCTCTGCATCTCCATGCTCTCATACAATTCAAGGGTAAAGCCAAGTTCCGAAATGAGAGACATTTCGATGTCACTCATCCCAACACCTCCTCCCAATTCCATGCGCACATCCAGGGAGCTAGATCCAGCTCTGATGTCAAGAGATACATCGAGAAGGACGGAGATTACGTCGAATGGGGTCGATTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAACGATGCTGCAGCTGAGGCATTAAATTCTGGGTCTGCTGAAGCTGCTTTAAATGTTATTAGGGAGAAACTCCCAAGAGATTTTATTTTCCAGTATCATAATTTAAAATCAAATTTAGATAGGATTTTTGCACCTCCATTAGAGGTTTATGTTAGTCCTTTTTTGTCTTCTTCGTTTGATAGAGTCCCTGAGGAGTTAGAAGAGTGGGTGTCTGAGAATGTGAAGAGTGCCGCTGCGCGGCCATATAGACCTAATAGTATTGTCGTCGAGGGCGATAGTCGGACAGGGAAGACTTTATGGGCCAGATCATTAGGCCCACATAATTATTTATGTGGGCATTTGGATTTAAGCCCTAAAATTTATTCAAACGATGCTTGGTATAACGTCATTGATGACGTAGATCCGCATTATTTGAAACACTTTAAAGAATTCATGGGGGCCCAGAGGGATTGGCAATCAAACACGAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATCCCAACAATCTTCCTCTGCAATCCAGGGCCCAATTCCAGCTATAAAGAATTCTTGGACGAAGAAAAGAATTCTGCACTCAAGCAGTGGGCCATCAAGAATGCAAAATTCATCACCCTCCAAGAGCCACTCTTCTCAGGTACCAATCAAGGTCCAACACAGAATAGCCAAGAGGAGAGCATTCCGCAGAAAACGAGTGGACCTTAA
Protein Sequence MPRINRFSVSAKNIFLTYSKCPIPKEQMLELIKNISCPSEKLFIRVAQEKHRDGSLHLHALIQFKGKAKFRNERHFDVTHPNTSSQFHAHIQGARSSSDVKRYIEKDGDYVEWGRFQIDGRSARGGQQTANDAAAEALNSGSAEAALNVIREKLPRDFIFQYHNLKSNLDRIFAPPLEVYVSPFLSSSFDRVPEELEEWVSENVKSAAARPYRPNSIVVEGDSRTGKTLWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKQWAIKNAKFITLQEPLFSGTNQGPTQNSQEESIPQKTSGP

NCBI Accession YP_001210304.1
Location 2174-2431
Gene Name AC4
Protein Name AC4
Coding Region ATGGGTCTCTGCATCTCCATGCTCTCATACAATTCAAGGGTAAAGCCAAGTTCCGAAATGAGAGACATTTCGATGTCACTCATCCCAACACCTCCTCCCAATTCCATGCGCACATCCAGGGAGCTAGATCCAGCTCTGATGTCAAGAGATACATCGAGAAGGACGGAGATTACGTCGAATGGGGTCGATTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAACGATGCTGCAGCTGAGGCATTAA
Protein Sequence MGLCISMLSYNSRVKPSSEMRDISMSLIPTPPPNSMRTSRELDPALMSRDTSRRTEITSNGVDFRSMEDLLEEVNRQLTMLQLRH

References More References in PubMed

1

Complete genome sequence of an isolate of Clerodendron yellow mosaic virus--a new begomovirus from India.

Sivalingam PN, et al.  Acta Virol. 2011;55(4):357-60. doi: 10.4149/av_2011_04_357.

PMID: 22149502

2

Molecular characterization and experimental host-range of two begomoviruses infecting Clerodendrum cyrtophyllum in China.

Li J, et al.  Virus Genes. 2010 Oct;41(2):250-9. doi: 10.1007/s11262-010-0493-4. Epub 2010 Jun 9.

PMID: 20532974