Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000895175.1 |
Isolate | Brazil |
Release date | 2015/2/22 |
Submitter | Wyant,P.S., Strohmeier,S., Schafer,B., Krenz,B., Assuncao,I.P., Lima,G.S., Jeske,H., Schaefer,B., Lima,G.S.A. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_004958224.1 |
---|---|
Location | 239-994 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCCAAGGTTGGCCGTTTATCCAACACCGCTCCTCGTGGAGGTTCTGGGCCTAGGTCCAACAAGGCCAATGAGTGGGTCAACAGACCCATGTACAGGAAGCCCAGGATATACCGGGCCTTCAGAACTCCAGATGTCCCTCGAGGGTGTGAAGGGCCATGCAAGGTCCAGTCCTATGAACAGCGACATGATATCTCTCATGTCGGTAAGGTTATGTGTATATCTGATGTCACCCGAGGTAATGGTATTACTCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTATATTTTAGGGAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGCACACCAATGGACTTTGGCCAGGTCTTCAACATGTTTGACAACGAGCCCAGCACTGCTACGGTTAAGAACGATCTACGCGATCGTTATCAGGTCATGCACAAGTTCTATGCCAAGGTCACTGGCGGTCAGTATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTATAATCACCAGGAGGCTGGGAAGTACGAGAATCACACGGAGAACGCACTCCTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGGATCTACTTTTACGATTCGATCATGAATTAA |
Protein Sequence | MPKRDAPWRLMAGTSKVGRLSNTAPRGGSGPRSNKANEWVNRPMYRKPRIYRAFRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
NCBI Accession | YP_004958225.1 |
---|---|
Location | 991-1389 |
Gene Name | AC3 |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAATCAGGGTAGAGGATCCACCGTACACTCGGACAAGAGTGTACCACATCCAGATAAGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGTCAACTTATTTGACTAGGTTTAGACACTTAGTCATGCTTTACTTAGACCGATTAGGAGTAATTACGCTTAACAATGTAATCAGAGCTGTGCGTTTCGCAACAGACAAATCTTATGTCAGCTATGTACTTGAAAACCACGTAATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGELITARQAENGVYIWEITNPLYFKIIRVEDPPYTRTRVYHIQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGSTYLTRFRHLVMLYLDRLGVITLNNVIRAVRFATDKSYVSYVLENHVIKFKFY |
NCBI Accession | YP_004958226.1 |
---|---|
Location | 1136-1525 |
Gene Name | AC2 |
Protein Name | transcriptional regulator |
Coding Region | ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCACGACACAGGATTGCGAAGAAGAGAGCAATCAGGCGACGACGAATTGATCTGGACTGCGGCTGCTCCATTTACCAGCATCTCAACTGCACGGGCCATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAATCAGGGTAGAGGATCCACCGTACACTCGGACAAGAGTGTACCACATCCAGATAAGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGTCAACTTATTTGACTAG |
Protein Sequence | MLNSSSSTPPSIKPRHRIAKKRAIRRRRIDLDCGCSIYQHLNCTGHGFTHRGTHHCTSGREWRLYLGDNKSPVFQDNQGRGSTVHSDKSVPHPDKVQPQPQESIGSPQGIPELPSLDDFSDSFWVNLFD |
NCBI Accession | YP_004958227.1 |
---|---|
Location | 1437-2516 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCCCGACTTTCCCATTCTTTTAGATTACAAGCCAGAAACATATTCCTCACATATCCCCGTTGCGACATACCCAAAGATGAAGCTCTTCAAATGCTTCAAGCCCTTTCATGGACAGTCGTCCAACCTACCTATATCAGAGTCGCACGTGAGGAACACTCCGATGGACACCCCCATCTACACTGTCTCATACAATTATCAGGAAAGTCCAACATCAGGGATGCAAGATTTTTCGACCTTACTCACCCCAGACGGTCAGCCAGTTTTCACCCGAACGTGCAAGCTGCCAAAGACACCGTTGCCGTCAGGAACTACATCACCAAAGATGGTGACTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACCAAGGCCAACAAGGACGATGTCTTCCACAACGCCGTCAATGCAGGAGGTGTTTCAGAGGCTCTTGAAATTATCAGAGCCGGAGATCCAAAGACCTTCATCGTCCAACACCATAACATCCGCTCCAACCTGGAATTGATCTTTAAGAGGGCTCCGGAACCATGGGCTCCTCCGTTTCCCCTCTCATCGTTCACTAACGTTCCTGAAGAGATGCAAGAGTGGGCGGATGATTATTTTGGAAGAAGTTCCGCTGCGCGGCCTGTTAGGCCCATAAGTATAATAGTTGAAGGTGATTCTCGAACTGGTAAGACGATGTGGGCTAGAGCATTAGGCCCACATAATTACTTGAGTGGCCATTTAGATTTCAATTCCCGGGTCTACTCAAATCAAGTTGAGTATAACGTCATCGATGATGTCAGCCCGCAATACCTAAAGCTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGATTGGCAGTCCAATTGCAAGTACGGCAAGCCTGTTCAAATTAAAGGGGGTATCCCATCAATCGTGCTATGCAATCCTGGAGAGGGGGCCAGCTATAAAGATTTCCTGGAGAAGCAGGAAAACTCATCACTTAAAGCCTGGACAATCAACAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCACGACACAGGATTGCGAAGAAGAGAGCAATCAGGCGACGACGAATTGA |
Protein Sequence | MPRLSHSFRLQARNIFLTYPRCDIPKDEALQMLQALSWTVVQPTYIRVAREEHSDGHPHLHCLIQLSGKSNIRDARFFDLTHPRRSASFHPNVQAAKDTVAVRNYITKDGDYCESGQYKVSGGTKANKDDVFHNAVNAGGVSEALEIIRAGDPKTFIVQHHNIRSNLELIFKRAPEPWAPPFPLSSFTNVPEEMQEWADDYFGRSSAARPVRPISIIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNQVEYNVIDDVSPQYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKQENSSLKAWTINNAKFIFLNSPLYQTTTQDCEEESNQATTN |
NCBI Accession | YP_004958228.1 |
---|---|
Location | 2009-2437 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGAAGCTCTTCAAATGCTTCAAGCCCTTTCATGGACAGTCGTCCAACCTACCTATATCAGAGTCGCACGTGAGGAACACTCCGATGGACACCCCCATCTACACTGTCTCATACAATTATCAGGAAAGTCCAACATCAGGGATGCAAGATTTTTCGACCTTACTCACCCCAGACGGTCAGCCAGTTTTCACCCGAACGTGCAAGCTGCCAAAGACACCGTTGCCGTCAGGAACTACATCACCAAAGATGGTGACTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACCAAGGCCAACAAGGACGATGTCTTCCACAACGCCGTCAATGCAGGAGGTGTTTCAGAGGCTCTTGAAATTATCAGAGCCGGAGATCCAAAGACCTTCATCGTCCAACACCATAACATCCGCTCCAACCTGGAATTGA |
Protein Sequence | MKLFKCFKPFHGQSSNLPISESHVRNTPMDTPIYTVSYNYQESPTSGMQDFSTLLTPDGQPVFTRTCKLPKTPLPSGTTSPKMVTIVNPDNTRCLGVPRPTRTMSSTTPSMQEVFQRLLKLSEPEIQRPSSSNTITSAPTWN |
NCBI Accession | YP_004958237.1 |
---|---|
Location | 453-1250 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTCCCATGTGTGTATGCCTAGTTTGAACATGTATTCTACAAAGAGTAGACGGGGATCGTCTGCATATCGGGGAACTTATTCTCGTAAACCTTTTATTAGACGTTCCTATGGTTCATCACGCACACATGCTAGACGTCGTGTTAGTAATCCTAACAGGTCAAGTGACGATAGCAAGATGTCACATTTTAGGATTCATGAAAATCAATATGGCCCAGAGTTTGTAATGCTTCATAACACGGCGATATCTACGTTTATTACGTATCCCACCCTTGGTAAGACTGAGCCTTGTCGTACTAGGTCATACATTAAACTGAGACGTTTGCGATATAAGGGAACTGTTAAGATTGAACGTGTTCACACGGATGTGAACATGAACGGGTTAATCCCCAAGATTGAAGGTGTGTTTTCCTTGGTGGTTGTTGTTGATCGCAAACCTCATCTTAGCCCATCTGGGAGCCTGTATACATTTGATGAGCTATTTGGTGCAAGGATCCATAGCCATGGTAACTTGGCCATTACTTCAGCTCTGAGAGATCGGTTTTACATACGTCATGTCCTGAAACGTGTATTATCTGTTGAGAAGGATACGACCATGATTGATCTCGAAGCAACCACATTATTGTCCACCAGGCGTTACAACTGTTGGGCTACTTTTAATGACCTTGATCGAGAATCATGTAATGGTGTTTATGCAAACATTAGCAAGAACGCCTTATTGGTTTATTATTGTTGGATGTCTGATACTGTGTCTAAGGCATCTACTTTTGTATCATTTGATCTGGATTACGTTGGATAA |
Protein Sequence | MSHVCMPSLNMYSTKSRRGSSAYRGTYSRKPFIRRSYGSSRTHARRRVSNPNRSSDDSKMSHFRIHENQYGPEFVMLHNTAISTFITYPTLGKTEPCRTRSYIKLRRLRYKGTVKIERVHTDVNMNGLIPKIEGVFSLVVVVDRKPHLSPSGSLYTFDELFGARIHSHGNLAITSALRDRFYIRHVLKRVLSVEKDTTMIDLEATTLLSTRRYNCWATFNDLDRESCNGVYANISKNALLVYYCWMSDTVSKASTFVSFDLDYVG |
NCBI Accession | YP_004958238.1 |
---|---|
Location | 1311-2192 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGAGTTCTCAGTTGGTTGCTCCTCCAAGCGCTTTTAATTATGTTGAATCTCAGCGTGATGAATACCAGCTATCGCATGACCTAACAGAAATTGTTCTGCAATTTCCTTCAACGGCGTCGCAAATTAGTGCTAAACTGAGTCGGAGCTGTATGAAGATAGATCATTGCGTCATCGAATACAGGCAGCAAGTGCCAATTAACGCCACAGGCTCAGTCATAATGGAGATTCACGACAAGAGGATGACGGACAATGAATCTCTACAGGCATCTTGGACCTTCCCAATCAGATGCAACATAGACCTACACTACTTCTCGTCGTCGTTCTTCTCCCTAAAAGATCCAATTCCATGGAAGTTATACTACAGAGTGATGGACACGAACGTTCATCAAAGGACGCATTTCGCCAAGTTCAAAGGAAAGCTGAAACTGTCAACAGCTAAACACTCTGTAGATATTCCGTTTAGGGCACCAACTGTGAAGATACTGTCGAAGCAGTTCACAGAAAAGGATATAGATTTCTCACACGTTGGATACGGAGCTTGGGAGCGGAAGCTCATAAGAACAGCTTCGACGTCAAGATTTGGGCTGCAAGTCCCAATAGAAATAAAGCCTGGAGAATCATGGGCTTCTAGAAGCACTATTGGGCTCACGAACTCATCAGGGGACTCGCAGCTACAAAACGAGATCCACCCATATAGACATTTACACAGACTAGGTTCAACAGTATTAGATCCAGGGGAGTCAGCATCGGTTACAGGAGCAGAGAGAACACGCTCCAACATTTCAATTTCGTTAGCGGAATTGAACGAGATTGTTAGGTCTACCGTACATGAATGTATTAACACAAATTGTACACCATCAGAACCAAAGTCATTGAAATAA |
Protein Sequence | MSSQLVAPPSAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAKLSRSCMKIDHCVIEYRQQVPINATGSVIMEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVMDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTEKDIDFSHVGYGAWERKLIRTASTSRFGLQVPIEIKPGESWASRSTIGLTNSSGDSQLQNEIHPYRHLHRLGSTVLDPGESASVTGAERTRSNISISLAELNEIVRSTVHECINTNCTPSEPKSLK |
1 |
Jovel J, et al. Arch Virol. 2004 Apr;149(4):829-41. doi: 10.1007/s00705-003-0235-1. Epub 2003 Dec 8. PMID: 15045569 |
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2 |
The complete nucleotide sequence of a new bipartite begomovirus from Brazil infecting Abutilon. Paprotka T, et al. Arch Virol. 2010 May;155(5):813-6. doi: 10.1007/s00705-010-0647-7. Epub 2010 Mar 28. PMID: 20349251 |
3 |
Molecular and biological characterization of corchorus mottle virus, a new begomovirus from Brazil. Blawid R, et al. Arch Virol. 2013 Dec;158(12):2603-9. doi: 10.1007/s00705-013-1764-x. Epub 2013 Jun 29. PMID: 23812656 |
4 |
Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil. Quadros AFF, et al. Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10. PMID: 30972592 |
5 |
Maliano MR, et al. PLoS One. 2021 Apr 28;16(4):e0250066. doi: 10.1371/journal.pone.0250066. eCollection 2021. PMID: 33909644 |
6 |
Novel begomoviruses recovered from Pavonia sp. in Brazil. Pinto VB, et al. Arch Virol. 2016 Mar;161(3):735-9. doi: 10.1007/s00705-015-2708-4. Epub 2015 Dec 12. PMID: 26660167 |
7 |
Variability in Geminivirus Isolates Associated with Phaseolus spp. in Brazil. Faria JC, et al. Phytopathology. 1999 Mar;89(3):262-8. doi: 10.1094/PHYTO.1999.89.3.262. PMID: 18944768 |