Chilli leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841265.1
Isolate Pakistan: Multan, Punjab province
Release date 2015/2/12
Submitter Shih,S.L., Tsai,W.S., Green,S.K., Khalid,S., Ahmad,I., Rezaian,M.A., Smith,J.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004628
ACCGGATGGCCGCGATTTTTTTACCGTGGGCCCCACCTTGCACGTGCTGACAAAGACATGTGGACCAATGAAAATTGTCCCTCATAGCTTAATTATTTCATGGTCCCCCCTATAAACTTGGGCTCCAAGTAGTGCACTCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAACATCTGCAGCTACTAGAAAATACATATTCTCCAGACACTCTGGGGTACGATTTAATTCGGGATTTGATCTCCGTTATTAGGGCTAAGAATTATGTCCAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCTTATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCCAGAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTAGTTCATATAGGGAAGGTGATGTGTATTAGTGATGTTACCCGTGGTACTGGGTTAACCCATAGAGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGTAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACGAATAGTGTGATGTTCTTCCTTGTCCGTGACCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATAGAGATCGTTATCAGGTTTTGAGAAAATGGCACGCAACGGTTACTGGTGGACAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAAGCTGGAAAATATGAGAATCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCACGCCTCTAATCCTGTGTATGCTACGTTACAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAAGATTGAATTTTATTGAATATGATTGTTGTACATATACAATGTTATGTAATACATTCCATAATACATGGTCGACAGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAACACTTGGGTCTTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGAGGTCTCGGCTCCTCAGGAATGGCCTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAACAGCCGCAGTCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTCGCTAGCCTATGCTGTACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGACGAAGGTCGCATTCTTCAAAGCCCAATTTTTGAGTGCGCTATTTTTCTCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGACCCAATGACCTGGCCCATATCGTCTTCCCCGTCCTACTCTCACCCTCTATGACAATACTTATGGGTCTTAAAGGCCGCGCAGCGGCACCGAGAACATTCTCGGCAGCCCACTCCTCAAGTTCCTCGGGAACTTGATCAAAAGAAGAAGAACAAAAAGGAGAAACATAAACCTCCAAGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGAAGAGCTTTTAGCTCTCTGAATGTTCGGATGGAAATTTGCTGACCGGGTTGGGGAAATAAGGTCGAAGAATCTGTTGTTTGTGCATTGGTATTTTCCCTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCGACAAACCCTAATAAATAATTTATTAACTGGGGTTTCCAAGTTCTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGAGAGCAGTTGGGATATGTTAGGAAATAATTTTTAGCATTTATATTGAATCTGCCAGCCCTAGGCATATTGGTGGACACTCAAACTTACTATGTAATCGGTGGAATGGGGGACAATATATATGTGTCCACCAATGGCAATTTGGTAATTGTTGTCATCTAAAAAAATTCAAAATTCAAATTCCGACAAAAGCGGCCATCCGCACTAATATT

Gene Information

NCBI Accession NP_803553.1
Location 146-502
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAACATCTGCAGCTACTAGAAAATACATATTCTCCAGACACTCTGGGGTACGATTTAATTCGGGATTTGATCTCCGTTATTAGGGCTAAGAATTATGTCCAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCTTATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCCAGAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKHLQLLENTYSPDTLGYDLIRDLISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQEAQDVQDVQKPRCS

NCBI Accession NP_803554.1
Location 306-1076
Gene Name V1
Protein Name coat protein
Coding Region ATGTCCAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCTTATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCCAGAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTAGTTCATATAGGGAAGGTGATGTGTATTAGTGATGTTACCCGTGGTACTGGGTTAACCCATAGAGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGTAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACGAATAGTGTGATGTTCTTCCTTGTCCGTGACCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATAGAGATCGTTATCAGGTTTTGAGAAAATGGCACGCAACGGTTACTGGTGGACAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAAGCTGGAAAATATGAGAATCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCACGCCTCTAATCCTGTGTATGCTACGTTACAGATACGGATCTATTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLQIRIYFYDSVSN

NCBI Accession NP_803555.1
Location 1073-1477
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAGCCGAGACCTCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAAGACCCAAGTGTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCTGTCGACCATGTATTATGGAATGTATTACATAACATTGTATATGTACAACAATCATATTCAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSRDLITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFKTQVLQFLNNFAVISINNVIRAVDHVLWNVLHNIVYVQQSYSIKFNLY

NCBI Accession NP_803556.1
Location 1218-1622
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTACAGCATAGGCTAGCGAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAGCCGAGACCTCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAA
Protein Sequence MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQQAIPEEPRPHHRADTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI

NCBI Accession NP_803557.1
Location 1561-2610
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTAGGGCTGGCAGATTCAATATAAATGCTAAAAATTATTTCCTAACATATCCCAACTGCTCTCTTACTAAAGAAGAGGCACTTTCCCAATTACAGAACTTGGAAACCCCAGTTAATAAATTATTTATTAGGGTTTGTCGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAGGGAAAATACCAATGCACAAACAACAGATTCTTCGACCTTATTTCCCCAACCCGGTCAGCAAATTTCCATCCGAACATTCAGAGAGCTAAAAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCCTTGGAGGTTTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCCGAGGAACTTGAGGAGTGGGCTGCCGAGAATGTTCTCGGTGCCGCTGCGCGGCCTTTAAGACCCATAAGTATTGTCATAGAGGGTGAGAGTAGGACGGGGAAGACGATATGGGCCAGGTCATTGGGTCCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACTAAATACGGGAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTAGACGAAGAGAAAAATAGCGCACTCAAAAATTGGGCTTTGAAGAATGCGACCTTCGTCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTACAGCATAG
Protein Sequence MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIRVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLISPTRSANFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGESRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFVTLTGPLYSGSNQSTA

NCBI Accession NP_803558.1
Location 2160-2453
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAGGGAAAATACCAATGCACAAACAACAGATTCTTCGACCTTATTTCCCCAACCCGGTCAGCAAATTTCCATCCGAACATTCAGAGAGCTAAAAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA
Protein Sequence MGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQQISIRTFRELKALQMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF

References More References in PubMed

1

Current status, breeding strategies and future prospects for managing chilli leaf curl virus disease and associated begomoviruses in Chilli (Capsicum spp.).

Nalla MK, et al.  Front Plant Sci. 2023 Oct 23;14:1223982. doi: 10.3389/fpls.2023.1223982. eCollection 2023.

PMID: 37936944
2

Role of Diversity and Recombination in the Emergence of Chilli Leaf Curl Virus.

Mishra M, et al.  Pathogens. 2022 Apr 30;11(5):529. doi: 10.3390/pathogens11050529.

PMID: 35631050
3

Loop-mediated isothermal amplification assay for quicker detection of tomato leaf curl Joydebpur virus infection in chilli.

Krishnan N, et al.  J Virol Methods. 2022 Apr;302:114474. doi: 10.1016/j.jviromet.2022.114474. Epub 2022 Jan 22.

PMID: 35077721
4

Identification of Chilli leaf curl virus and associated betasatellite infecting Osteospermum fruticosum in Rajasthan, India.

Mishra M, et al.  3 Biotech. 2020 Apr;10(4):169. doi: 10.1007/s13205-020-2159-9. Epub 2020 Mar 16.

PMID: 32206503
5

Chilli leaf curl virus infection downregulates the expression of the genes encoding chloroplast proteins and stress-related proteins.

Kushwaha NK, et al.  Physiol Mol Biol Plants. 2019 Sep;25(5):1185-1196. doi: 10.1007/s12298-019-00693-1. Epub 2019 Aug 22.

PMID: 31564781
6

Molecular and biological characterization of Chilli leaf curl virus and associated betasatellite infecting Cucurbita maxima in Oman.

Shahid MS.  Virusdisease. 2020 Sep;31(3):378-382. doi: 10.1007/s13337-020-00601-2. Epub 2020 May 29.

PMID: 32904994
7

Molecular characterization of chilli leaf curl Ahmedabad virus: homology modelling and evaluation of viral proteins interacting with host protein SnRK1 and docking against flavonoids-an in silico approach.

Sravya G, et al.  Theory Biosci. 2023 Feb;142(1):47-60. doi: 10.1007/s12064-022-00383-9. Epub 2023 Jan 6.

PMID: 36607541
8

Chilli leaf curl disease populations in India are highly recombinant, and rapidly segregated.

Pandey V, et al.  3 Biotech. 2022 Mar;12(3):83. doi: 10.1007/s13205-022-03139-w. Epub 2022 Feb 28.

PMID: 35251885
9

First Report of Chilli leaf curl India virus Infecting Mentha spicata (Neera) in India.

Saeed ST, et al.  Plant Dis. 2014 Jan;98(1):164. doi: 10.1094/PDIS-07-13-0750-PDN.

PMID: 30708610
10

Molecular characterization of begomovirus and DNA satellites associated with mosaic and leaf curl disease of Jamaica cherry (Muntingia calabura) in India: Uncovering a new host for chilli leaf curl India virus.

Prasad KSUD, et al.  Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16.

PMID: 39464737