Chilli leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000841265.1 |
| Isolate |
Pakistan: Multan, Punjab province |
| Release date |
2015/2/12 |
| Submitter |
Shih,S.L., Tsai,W.S., Green,S.K., Khalid,S., Ahmad,I., Rezaian,M.A., Smith,J. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTACCGTGGGCCCCACCTTGCACGTGCTGACAAAGACATGTGGACCAATGAAAATTGTCCCTCATAGCTTAATTATTTCATGGTCCCCCCTATAAACTTGGGCTCCAAGTAGTGCACTCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAACATCTGCAGCTACTAGAAAATACATATTCTCCAGACACTCTGGGGTACGATTTAATTCGGGATTTGATCTCCGTTATTAGGGCTAAGAATTATGTCCAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCTTATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCCAGAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTAGTTCATATAGGGAAGGTGATGTGTATTAGTGATGTTACCCGTGGTACTGGGTTAACCCATAGAGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGTAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACGAATAGTGTGATGTTCTTCCTTGTCCGTGACCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATAGAGATCGTTATCAGGTTTTGAGAAAATGGCACGCAACGGTTACTGGTGGACAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAAGCTGGAAAATATGAGAATCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCACGCCTCTAATCCTGTGTATGCTACGTTACAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAAGATTGAATTTTATTGAATATGATTGTTGTACATATACAATGTTATGTAATACATTCCATAATACATGGTCGACAGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAACACTTGGGTCTTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGAGGTCTCGGCTCCTCAGGAATGGCCTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAACAGCCGCAGTCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTCGCTAGCCTATGCTGTACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGACGAAGGTCGCATTCTTCAAAGCCCAATTTTTGAGTGCGCTATTTTTCTCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGACCCAATGACCTGGCCCATATCGTCTTCCCCGTCCTACTCTCACCCTCTATGACAATACTTATGGGTCTTAAAGGCCGCGCAGCGGCACCGAGAACATTCTCGGCAGCCCACTCCTCAAGTTCCTCGGGAACTTGATCAAAAGAAGAAGAACAAAAAGGAGAAACATAAACCTCCAAGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGAAGAGCTTTTAGCTCTCTGAATGTTCGGATGGAAATTTGCTGACCGGGTTGGGGAAATAAGGTCGAAGAATCTGTTGTTTGTGCATTGGTATTTTCCCTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCGACAAACCCTAATAAATAATTTATTAACTGGGGTTTCCAAGTTCTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGAGAGCAGTTGGGATATGTTAGGAAATAATTTTTAGCATTTATATTGAATCTGCCAGCCCTAGGCATATTGGTGGACACTCAAACTTACTATGTAATCGGTGGAATGGGGGACAATATATATGTGTCCACCAATGGCAATTTGGTAATTGTTGTCATCTAAAAAAATTCAAAATTCAAATTCCGACAAAAGCGGCCATCCGCACTAATATT
Gene Information
|
NCBI Accession
|
NP_803553.1
|
|
Location
|
146-502 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAACATCTGCAGCTACTAGAAAATACATATTCTCCAGACACTCTGGGGTACGATTTAATTCGGGATTTGATCTCCGTTATTAGGGCTAAGAATTATGTCCAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCTTATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCCAGAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKHLQLLENTYSPDTLGYDLIRDLISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQEAQDVQDVQKPRCS |
|
NCBI Accession
|
NP_803554.1
|
|
Location
|
306-1076 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCCAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCTTATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCCAGAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTAGTTCATATAGGGAAGGTGATGTGTATTAGTGATGTTACCCGTGGTACTGGGTTAACCCATAGAGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGTAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACGAATAGTGTGATGTTCTTCCTTGTCCGTGACCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATAGAGATCGTTATCAGGTTTTGAGAAAATGGCACGCAACGGTTACTGGTGGACAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAAGCTGGAAAATATGAGAATCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCACGCCTCTAATCCTGTGTATGCTACGTTACAGATACGGATCTATTTCTATGATTCAGTATCGAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLQIRIYFYDSVSN |
|
NCBI Accession
|
NP_803555.1
|
|
Location
|
1073-1477 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAGCCGAGACCTCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAAGACCCAAGTGTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCTGTCGACCATGTATTATGGAATGTATTACATAACATTGTATATGTACAACAATCATATTCAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSRDLITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFKTQVLQFLNNFAVISINNVIRAVDHVLWNVLHNIVYVQQSYSIKFNLY |
|
NCBI Accession
|
NP_803556.1
|
|
Location
|
1218-1622 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCGACCTTCGTCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTACAGCATAGGCTAGCGAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAGCCGAGACCTCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAA |
|
Protein Sequence
|
MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQQAIPEEPRPHHRADTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI |
|
NCBI Accession
|
NP_803557.1
|
|
Location
|
1561-2610 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCTAGGGCTGGCAGATTCAATATAAATGCTAAAAATTATTTCCTAACATATCCCAACTGCTCTCTTACTAAAGAAGAGGCACTTTCCCAATTACAGAACTTGGAAACCCCAGTTAATAAATTATTTATTAGGGTTTGTCGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAGGGAAAATACCAATGCACAAACAACAGATTCTTCGACCTTATTTCCCCAACCCGGTCAGCAAATTTCCATCCGAACATTCAGAGAGCTAAAAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCCTTGGAGGTTTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCCGAGGAACTTGAGGAGTGGGCTGCCGAGAATGTTCTCGGTGCCGCTGCGCGGCCTTTAAGACCCATAAGTATTGTCATAGAGGGTGAGAGTAGGACGGGGAAGACGATATGGGCCAGGTCATTGGGTCCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACTAAATACGGGAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTAGACGAAGAGAAAAATAGCGCACTCAAAAATTGGGCTTTGAAGAATGCGACCTTCGTCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTACAGCATAG |
|
Protein Sequence
|
MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIRVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLISPTRSANFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGESRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFVTLTGPLYSGSNQSTA |
|
NCBI Accession
|
NP_803558.1
|
|
Location
|
2160-2453 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAGGGAAAATACCAATGCACAAACAACAGATTCTTCGACCTTATTTCCCCAACCCGGTCAGCAAATTTCCATCCGAACATTCAGAGAGCTAAAAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA |
|
Protein Sequence
|
MGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQQISIRTFRELKALQMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF |