Chilli leaf curl Vellanad virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002821845.1 |
| Isolate |
India: Vellanad |
| Release date |
2018/8/25 |
| Submitter |
Singh,A.K., Chattopadhyay,B., Chakraborty,S., Vinothkumar,R. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCATTTCTGTCATTGTCATGGGACCCACGTGTGTCGGCTTTGGCTTTTGTCTTTTGCATGGGCCCCACCACTAACTAATGTTAACCAATCACAGCCCCCCGTCAAAGCTTAATTATTGAAGTGGGCCCCTATATAAACTTGGGGACGAAGTTTCAATTTTATTCAAGATGTGGGACCCCCTAGTCAATGATTTTCCTGAAACTGTACATGGTTTCAGGTGTATGCTTGCAATAAAATACTTGCAATTAGTAGAAAATACATACTCACCAGATACCTTGGGGTACGATTTAATTAGGGATTTAATCTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGTCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCTGATGTTCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCCAGGCATGACGTGACCCACGTAGGGAAGGTTATGTGTATTAGTGATGTTACACGAGGTAGTGGGCTTACCCATAGAGTAGGTAAACGTTTTTGTGTCAAGTCAGTGTATGTGTTAGGTAAAATTTGGATGGATGAAAATATTAAAACGAAGAACCACACTAACAGTGTGATGTTCTTCCTTGTCCGTGATAGAAGACCTGTGGATAGACCCCAGGATTTTGGAGAGGTTTTCAACATGTTTGACAATGAACCCAGTACCGCAACCGTGAAGAATGTACATCGTGATCGATATCAAGTATTGAGGAAATGGCATGCAACTGTTACCGGAGGTCAGTACGCATCGAAGGAGCAGGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAATTTATAACCAGCAGGAAGCTGGTAAGTATGAGAATCATCAGGAGAATGCGTTAATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTTTGAAGATACGGATCTACTTCTACGATTCAGTATCAAATTAATAAACGTTATATTTTATTTCACTGAATTGTTGTACACTTACAGTACCCGTTAGTACATTCCACAATACATGATCAACTCCCCTAATTACATTATTAACACTAACAACTCCTAAACTATCTAAATATCGTAGAAGTTGGGTTTTAAAGACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAAATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACACTCTCCGAAGGTTGTGGTTGAACTGCACCCGTAATGATATGAGGTCTGTGGTCGAGTTGAATGGCCGGCTGTCGTGGTTGAGGATCGTGAAATATAGGGGATTTGGGACCTGCCAGATATAGACGCCATTCGTTGCCAGAGCTGCAGTGATGCGTTCCCCTGTGCGTGAATCCATGATTCCTGCAGTCGATACCCAGGTAGTATGAACAACCACACTCAAGGTCCACCCGTTTCCTCCGGTTGGTCTTCTTGTATTGTCTGTGGAGAACCTTTATTGGTACCTGAGTAGAGTGGGCCTTGGAGGGTGACGAAGACTGCATTCTTTAGTGCCCAATTCCTTAGTGCGGAATTTTTGTCTTCGTCCAAGAACTCTTTATAGCTGGAATTGGGCCCTGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTTATTTGAACTGGCTTTCCGTATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAGGCATCATTTGAATATATTTTTGGGCTTAAATCCAAATGGCCACATAAGTAATTATGTGGACCCAAAGACCTAGCCCACATTGTTTTGCCGGTCCGACTATCACCCTCTAACACAATACTCATGGGTCTATTCGGCCGCGCAGCGGCACTGACAACATTCACGGCAGCCCATTCGTCAAGTTCATCACGAACTTGATCAAAGGAAGAACTTAAAAAAGGACAAACAAAAACCTCTCTTGGAGGTGCAAAAATCCTATCTAAATTGGTTTTCAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATGATTGCCAGAGCGGCATCAGCGGAGCCTGAATTTAGGGCCTCTGCTGCAGCATCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCGTCCATCGACCTGAAAACTACCCCAGTCGATGTAATCTCCGTCCTTCTCGATGTAGGACTTGACATCGGAGGAGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGATGAGGTGTTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCGGAACTGGGCTTTACCCTTGAACTGGATGAGGGCGTGGATATGCAGAGACCCATCTTGATGTTTTTCTTGAGAAATCCGGATAAATAATTTATCTGATGGGCATGAAATGCCCTTAAGTAGTTCTAACATTTGTTCCTTAGGTATGGGGCATTTTGGGTATGTTAAGAAAATATTTTTGGCTAAAACTTGAAATCTGTTTGCACGTGGCATTTTGTATTGGATGCTCTACAAACTCTGTGGGAATTGGATGCTTTGGATGCCTATATATATGAAGCTTCCAAATGGCATAAACGTAATTTACGGGAAATTTCCAATCTATTTCCCGCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009506390.1
|
|
Location
|
183-530 |
|
Gene Name
|
AV2 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGTGGGACCCCCTAGTCAATGATTTTCCTGAAACTGTACATGGTTTCAGGTGTATGCTTGCAATAAAATACTTGCAATTAGTAGAAAATACATACTCACCAGATACCTTGGGGTACGATTTAATTAGGGATTTAATCTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGTCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLVNDFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQSCCCPHCPRHKSKGMGQQAHESEAQDVQDVQKP |
|
NCBI Accession
|
YP_009506391.1
|
|
Location
|
343-1113 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGTCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCTGATGTTCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCCAGGCATGACGTGACCCACGTAGGGAAGGTTATGTGTATTAGTGATGTTACACGAGGTAGTGGGCTTACCCATAGAGTAGGTAAACGTTTTTGTGTCAAGTCAGTGTATGTGTTAGGTAAAATTTGGATGGATGAAAATATTAAAACGAAGAACCACACTAACAGTGTGATGTTCTTCCTTGTCCGTGATAGAAGACCTGTGGATAGACCCCAGGATTTTGGAGAGGTTTTCAACATGTTTGACAATGAACCCAGTACCGCAACCGTGAAGAATGTACATCGTGATCGATATCAAGTATTGAGGAAATGGCATGCAACTGTTACCGGAGGTCAGTACGCATCGAAGGAGCAGGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAATTTATAACCAGCAGGAAGCTGGTAAGTATGAGAATCATCAGGAGAATGCGTTAATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTTTGAAGATACGGATCTACTTCTACGATTCAGTATCAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVTHVGKVMCISDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDRPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVRKFVRVNNYVIYNQQEAGKYENHQENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_009506392.1
|
|
Location
|
1110-1514 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACGCATCACTGCAGCTCTGGCAACGAATGGCGTCTATATCTGGCAGGTCCCAAATCCCCTATATTTCACGATCCTCAACCACGACAGCCGGCCATTCAACTCGACCACAGACCTCATATCATTACGGGTGCAGTTCAACCACAACCTTCGGAGAGTGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATTTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAAAACCCAACTTCTACGATATTTAGATAGTTTAGGAGTTGTTAGTGTTAATAATGTAATTAGGGGAGTTGATCATGTATTGTGGAATGTACTAACGGGTACTGTAAGTGTACAACAATTCAGTGAAATAAAATATAACGTTTATTAA |
|
Protein Sequence
|
MDSRTGERITAALATNGVYIWQVPNPLYFTILNHDSRPFNSTTDLISLRVQFNHNLRRVLGIHKCFLTFRIWTTLQPRTGHFLRVFKTQLLRYLDSLGVVSVNNVIRGVDHVLWNVLTGTVSVQQFSEIKYNVY |
|
NCBI Accession
|
YP_009506393.1
|
|
Location
|
1255-1659 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP |
|
Coding Region
|
ATGCAGTCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCAATAAAGGTTCTCCACAGACAATACAAGAAGACCAACCGGAGGAAACGGGTGGACCTTGAGTGTGGTTGTTCATACTACCTGGGTATCGACTGCAGGAATCATGGATTCACGCACAGGGGAACGCATCACTGCAGCTCTGGCAACGAATGGCGTCTATATCTGGCAGGTCCCAAATCCCCTATATTTCACGATCCTCAACCACGACAGCCGGCCATTCAACTCGACCACAGACCTCATATCATTACGGGTGCAGTTCAACCACAACCTTCGGAGAGTGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATTTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MQSSSPSKAHSTQVPIKVLHRQYKKTNRRKRVDLECGCSYYLGIDCRNHGFTHRGTHHCSSGNEWRLYLAGPKSPIFHDPQPRQPAIQLDHRPHIITGAVQPQPSESVGDTQMFSNLPNLDDLTASDWSFLKGL |
|
NCBI Accession
|
YP_009506394.1
|
|
Location
|
1556-2647 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGCCACGTGCAAACAGATTTCAAGTTTTAGCCAAAAATATTTTCTTAACATACCCAAAATGCCCCATACCTAAGGAACAAATGTTAGAACTACTTAAGGGCATTTCATGCCCATCAGATAAATTATTTATCCGGATTTCTCAAGAAAAACATCAAGATGGGTCTCTGCATATCCACGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCCTCCGATGTCAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGTAGTTTTCAGGTCGATGGACGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCTGCAGCAGAGGCCCTAAATTCAGGCTCCGCTGATGCCGCTCTGGCAATCATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTGAAAACCAATTTAGATAGGATTTTTGCACCTCCAAGAGAGGTTTTTGTTTGTCCTTTTTTAAGTTCTTCCTTTGATCAAGTTCGTGATGAACTTGACGAATGGGCTGCCGTGAATGTTGTCAGTGCCGCTGCGCGGCCGAATAGACCCATGAGTATTGTGTTAGAGGGTGATAGTCGGACCGGCAAAACAATGTGGGCTAGGTCTTTGGGTCCACATAATTACTTATGTGGCCATTTGGATTTAAGCCCAAAAATATATTCAAATGATGCCTGGTATAACGTCATTGATGACGTCGACCCCCACTACCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGTCCAACACAAAATACGGAAAGCCAGTTCAAATAAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCAGGGCCCAATTCCAGCTATAAAGAGTTCTTGGACGAAGACAAAAATTCCGCACTAAGGAATTGGGCACTAAAGAATGCAGTCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCAATAAAGGTTCTCCACAGACAATACAAGAAGACCAACCGGAGGAAACGGGTGGACCTTGA |
|
Protein Sequence
|
MPRANRFQVLAKNIFLTYPKCPIPKEQMLELLKGISCPSDKLFIRISQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGSFQVDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPKDFIFQYHNLKTNLDRIFAPPREVFVCPFLSSSFDQVRDELDEWAAVNVVSAAARPNRPMSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALRNWALKNAVFVTLQGPLYSGTNKGSPQTIQEDQPEETGGP |
|
NCBI Accession
|
YP_009506395.1
|
|
Location
|
2233-2490 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCTGCATATCCACGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCCTCCGATGTCAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGTAGTTTTCAGGTCGATGGACGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCTGCAGCAGAGGCCCTAA |
|
Protein Sequence
|
MGLCISTPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPPPMSSPTSRRTEITSTGVVFRSMDDLLEEVSRQLMMLQQRP |