Chilli leaf curl Sri Lanka virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004786955.1
Isolate Sri Lanka: Nochchiyagama
Release date 2021/6/1
Submitter Senanayake,D.M., Mandal,B., Jayasinghe,J.E., Wasala,S.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055131
ACCGGATGGCCGCGCCCCTTTCTGTCGCTTTCATGGTCCCCCCGTGTGTCTTTTCCCCACCACATATGTGCCCCCGTCAAAGCTTAATTATTCATGTGGGCCCCTATATAAACTTGGTGACCAAGTTTTACATTCATTTACAATGTAGGATCCACTTGTAAATGATTTTCCTGAAACCGTACACGGGTTCAGGTGTATGCTTGCAATTAAATACTTGCAACTTGTAGAAAATACGTATTCCCCTGATTCTCTGGGATACGACTTGATACGAGAATTAATATCCGTAGTTCGTGCCAAAAATTATGTCCAAGCGTCCGGCAGATATGATCATTTCAGGACCCGCCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCCGACGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTACAGAAGCCCTGATGTTCCCAAGGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTCGAGTCTAGGCATGACGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACGGGTCTGACCCATAGGGTAGGTAAGCGTTTCTGCGTTAAGTCTGTCTATGTTCTGGGCAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTCTTCCTTGTTCGTGATCGTCGTCCAGTTGATAAACCTCAAGATTTTGGTGATGTGTTTAACATGTTCGACAACGAGCCGAGCACTGCAACGGTCAAGAATATGCACAGGGATCGTTACCAGGTTCTCAGGAAGTGGCATGCAACCGTGACTGGTGGTCAATATGCGTCTAAGGAGCAGGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCACAGTGAGAATGCGTTGATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTCTGAAAATACGAATCTATTTCTACGATTCGGTTACAAATTAATAAACATTGAATTTTATTATGTTTGAACTCTGTACATAGACTGTTTGCGTTAATACATTCCACAATACATGATCGACTGCCCTAATTACATTGTTGAGGCTAATTACAGCAAAATTATTGATACATTTTAACACTTGGGTCCTAAACACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCGAAGGTTGTGGTTGAACTGGACCCTGATAGTTATCAGGTCCGTGTTGGAGTTGAATGGCCTGCTGTCGTGGCTGAGGATCTTGAAATATAGGGGATTTGGGACCTGCAAGATACTGACGCCATTCGTTGCCTGAGCTGCAGTGATGCGTTCCCCTGTGCGTAAATCCATGGTTCCTGCAGTTGATATGGATGTAGTAGGAACAACCACAGTCAAGGTCCACCCTCTTCCTCCTGATGGACCTCTTGGCTTGCCTGTGGAGAACCTTGATTGGTACCTGAGTATAGTGGGCCTGTGAGGGTGACGAAGATTGCATTCTTGAGTGCCCAATGTTTTAGTGCGGAATGCTTTTCTTCGTCCAGGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAACTGGCTTTCCGTATTTGGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAAATAATGCGGATCCACATCATCAATGACGTTATACCATGCGTCATTTGAATACACTCTTGGGCTTAAGTCCAAGTGGCCACACAAATAATTGTGAGGGCCGAGGGACCTAGCCCACATTGTTTTGCCGGTCCGACTATCACCCTCAATAACAATTCCTATGGGCCTAATAGGCCGCGCAGCGGCAGTGACAACATTAACTGCAGCCCATTCTTCAAGTTCATCAGGAACTTGATCAAAAGAAGAAATAGAAAAAGGAGAAATATAAACCTCTCTTGGAGGTGCAAAAATCCTATCTAAATTAGACTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTTATTATTGCCAAAGCGGCATCAGCGGATCCTGAATTGAGGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGAGCTGAAAATCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGATGAGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGATGAGGTGTTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGGCTTTACCCTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCCTGAGCAACCCGTATAAATAGTTTATCAGATGGACAGTTAATGCCCTTAATAAGTTCTAACATTTGTTCTTTGGGTATTGGGCATTTGGGGTATGTTAAAAAAATATTTTTAGCCTGAACTTGAAACGACCGTGTTTTAGGCATTTTGAATTGGACAATTGGCTCTCCAAACTCCATGTGGGAATTGGAGGCTTTGGAGGCTCATTTATACCAAGCCTCCAAATGGCAGTATGGTAATTTTTTAGAAATTTCAATCAACTTCCCGCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_010084340.1
Location 197-490
Gene Name V2
Protein Name V2 protein
Coding Region ATGCTTGCAATTAAATACTTGCAACTTGTAGAAAATACGTATTCCCCTGATTCTCTGGGATACGACTTGATACGAGAATTAATATCCGTAGTTCGTGCCAAAAATTATGTCCAAGCGTCCGGCAGATATGATCATTTCAGGACCCGCCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCCGACGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTACAGAAGCCCTGA
Protein Sequence MLAIKYLQLVENTYSPDSLGYDLIRELISVVRAKNYVQASGRYDHFRTRLEVSSTADLNQPIQPTCCCPHCPRHKGKGMGQQAHESEAHVLQNVQKP

NCBI Accession YP_010084341.1
Location 303-1073
Gene Name V1
Protein Name V1 protein
Coding Region ATGTCCAAGCGTCCGGCAGATATGATCATTTCAGGACCCGCCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCCGACGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTACAGAAGCCCTGATGTTCCCAAGGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTCGAGTCTAGGCATGACGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACGGGTCTGACCCATAGGGTAGGTAAGCGTTTCTGCGTTAAGTCTGTCTATGTTCTGGGCAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTCTTCCTTGTTCGTGATCGTCGTCCAGTTGATAAACCTCAAGATTTTGGTGATGTGTTTAACATGTTCGACAACGAGCCGAGCACTGCAACGGTCAAGAATATGCACAGGGATCGTTACCAGGTTCTCAGGAAGTGGCATGCAACCGTGACTGGTGGTCAATATGCGTCTAAGGAGCAGGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCACAGTGAGAATGCGTTGATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTCTGAAAATACGAATCTATTTCTACGATTCGGTTACAAATTAA
Protein Sequence MSKRPADMIISGPASKYRRLLTSTSPYSRRAAVRIVRATKGKEWANRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084342.1
Location 1070-1474
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACGCATCACTGCAGCTCAGGCAACGAATGGCGTCAGTATCTTGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAGCCACGACAGCAGGCCATTCAACTCCAACACGGACCTGATAACTATCAGGGTCCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTGTTTAGGACCCAAGTGTTAAAATGTATCAATAATTTTGCTGTAATTAGCCTCAACAATGTAATTAGGGCAGTCGATCATGTATTGTGGAATGTATTAACGCAAACAGTCTATGTACAGAGTTCAAACATAATAAAATTCAATGTTTATTAA
Protein Sequence MDLRTGERITAAQATNGVSILQVPNPLYFKILSHDSRPFNSNTDLITIRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLKCINNFAVISLNNVIRAVDHVLWNVLTQTVYVQSSNIIKFNVY

NCBI Accession YP_010084343.1
Location 1215-1619
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAATCTTCGTCACCCTCACAGGCCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAGGTCCATCAGGAGGAAGAGGGTGGACCTTGACTGTGGTTGTTCCTACTACATCCATATCAACTGCAGGAACCATGGATTTACGCACAGGGGAACGCATCACTGCAGCTCAGGCAACGAATGGCGTCAGTATCTTGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAGCCACGACAGCAGGCCATTCAACTCCAACACGGACCTGATAACTATCAGGGTCCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTGTTTAG
Protein Sequence MQSSSPSQAHYTQVPIKVLHRQAKRSIRRKRVDLDCGCSYYIHINCRNHGFTHRGTHHCSSGNEWRQYLAGPKSPIFQDPQPRQQAIQLQHGPDNYQGPVQPQPSESVGDTQMFSNLPNLDDLTASDWSFLKGV

NCBI Accession YP_010084344.1
Location 1516-2640
Gene Name C1
Protein Name Rep protein
Coding Region ATGGAGTTTGGAGAGCCAATTGTCCAATTCAAAATGCCTAAAACACGGTCGTTTCAAGTTCAGGCTAAAAATATTTTTTTAACATACCCCAAATGCCCAATACCCAAAGAACAAATGTTAGAACTTATTAAGGGCATTAACTGTCCATCTGATAAACTATTTATACGGGTTGCTCAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGATTTTCAGCTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTCAATTCAGGATCCGCTGATGCCGCTTTGGCAATAATAAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAGTCTAATTTAGATAGGATTTTTGCACCTCCAAGAGAGGTTTATATTTCTCCTTTTTCTATTTCTTCTTTTGATCAAGTTCCTGATGAACTTGAAGAATGGGCTGCAGTTAATGTTGTCACTGCCGCTGCGCGGCCTATTAGGCCCATAGGAATTGTTATTGAGGGTGATAGTCGGACCGGCAAAACAATGTGGGCTAGGTCCCTCGGCCCTCACAATTATTTGTGTGGCCACTTGGACTTAAGCCCAAGAGTGTATTCAAATGACGCATGGTATAACGTCATTGATGATGTGGATCCGCATTATTTAAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAGTCCAACACCAAATACGGAAAGCCAGTTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGGCCCAACTCCAGCTATAAAGAGTTCCTGGACGAAGAAAAGCATTCCGCACTAAAACATTGGGCACTCAAGAATGCAATCTTCGTCACCCTCACAGGCCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAGGTCCATCAGGAGGAAGAGGGTGGACCTTGA
Protein Sequence MEFGEPIVQFKMPKTRSFQVQAKNIFLTYPKCPIPKEQMLELIKGINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGDFQLDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPKDFIFQYHNLKSNLDRIFAPPREVYISPFSISSFDQVPDELEEWAAVNVVTAAARPIRPIGIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKHSALKHWALKNAIFVTLTGPLYSGTNQGSPQASQEVHQEEEGGP

NCBI Accession YP_010084345.1
Location 2160-2450
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGATTTTCAGCTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTCAATTCAGGATCCGCTGATGCCGCTTTGGCAATAA
Protein Sequence MGLCISMPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPHPMSSPTSRRTVITSTGVIFSSMEDLLEEVNRQLMMLQQRPSIQDPLMPLWQ

References More References in PubMed

1

A new begomovirus-betasatellite complex is associated with chilli leaf curl disease in Sri Lanka.

Senanayake DM, et al.  Virus Genes. 2013 Feb;46(1):128-39. doi: 10.1007/s11262-012-0836-4. Epub 2012 Oct 23.

PMID: 23090833
2

An Overview of Chili Leaf Curl Disease: Molecular Mechanisms, Impact, Challenges, and Disease Management Strategies in Indian Subcontinent.

Shingote PR, et al.  Front Microbiol. 2022 Jun 29;13:899512. doi: 10.3389/fmicb.2022.899512. eCollection 2022.

PMID: 35847087
3

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939