Chilli leaf curl Sri Lanka virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004786955.1
Isolate Sri Lanka: Nochchiyagama
Release date 2021/6/1
Submitter Senanayake,D.M., Mandal,B., Jayasinghe,J.E., Wasala,S.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055131
ACCGGATGGCCGCGCCCCTTTCTGTCGCTTTCATGGTCCCCCCGTGTGTCTTTTCCCCACCACATATGTGCCCCCGTCAAAGCTTAATTATTCATGTGGGCCCCTATATAAACTTGGTGACCAAGTTTTACATTCATTTACAATGTAGGATCCACTTGTAAATGATTTTCCTGAAACCGTACACGGGTTCAGGTGTATGCTTGCAATTAAATACTTGCAACTTGTAGAAAATACGTATTCCCCTGATTCTCTGGGATACGACTTGATACGAGAATTAATATCCGTAGTTCGTGCCAAAAATTATGTCCAAGCGTCCGGCAGATATGATCATTTCAGGACCCGCCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCCGACGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTACAGAAGCCCTGATGTTCCCAAGGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTCGAGTCTAGGCATGACGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACGGGTCTGACCCATAGGGTAGGTAAGCGTTTCTGCGTTAAGTCTGTCTATGTTCTGGGCAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTCTTCCTTGTTCGTGATCGTCGTCCAGTTGATAAACCTCAAGATTTTGGTGATGTGTTTAACATGTTCGACAACGAGCCGAGCACTGCAACGGTCAAGAATATGCACAGGGATCGTTACCAGGTTCTCAGGAAGTGGCATGCAACCGTGACTGGTGGTCAATATGCGTCTAAGGAGCAGGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCACAGTGAGAATGCGTTGATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTCTGAAAATACGAATCTATTTCTACGATTCGGTTACAAATTAATAAACATTGAATTTTATTATGTTTGAACTCTGTACATAGACTGTTTGCGTTAATACATTCCACAATACATGATCGACTGCCCTAATTACATTGTTGAGGCTAATTACAGCAAAATTATTGATACATTTTAACACTTGGGTCCTAAACACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCGAAGGTTGTGGTTGAACTGGACCCTGATAGTTATCAGGTCCGTGTTGGAGTTGAATGGCCTGCTGTCGTGGCTGAGGATCTTGAAATATAGGGGATTTGGGACCTGCAAGATACTGACGCCATTCGTTGCCTGAGCTGCAGTGATGCGTTCCCCTGTGCGTAAATCCATGGTTCCTGCAGTTGATATGGATGTAGTAGGAACAACCACAGTCAAGGTCCACCCTCTTCCTCCTGATGGACCTCTTGGCTTGCCTGTGGAGAACCTTGATTGGTACCTGAGTATAGTGGGCCTGTGAGGGTGACGAAGATTGCATTCTTGAGTGCCCAATGTTTTAGTGCGGAATGCTTTTCTTCGTCCAGGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAACTGGCTTTCCGTATTTGGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAAATAATGCGGATCCACATCATCAATGACGTTATACCATGCGTCATTTGAATACACTCTTGGGCTTAAGTCCAAGTGGCCACACAAATAATTGTGAGGGCCGAGGGACCTAGCCCACATTGTTTTGCCGGTCCGACTATCACCCTCAATAACAATTCCTATGGGCCTAATAGGCCGCGCAGCGGCAGTGACAACATTAACTGCAGCCCATTCTTCAAGTTCATCAGGAACTTGATCAAAAGAAGAAATAGAAAAAGGAGAAATATAAACCTCTCTTGGAGGTGCAAAAATCCTATCTAAATTAGACTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTTATTATTGCCAAAGCGGCATCAGCGGATCCTGAATTGAGGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGAGCTGAAAATCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGATGAGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGATGAGGTGTTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGGCTTTACCCTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCCTGAGCAACCCGTATAAATAGTTTATCAGATGGACAGTTAATGCCCTTAATAAGTTCTAACATTTGTTCTTTGGGTATTGGGCATTTGGGGTATGTTAAAAAAATATTTTTAGCCTGAACTTGAAACGACCGTGTTTTAGGCATTTTGAATTGGACAATTGGCTCTCCAAACTCCATGTGGGAATTGGAGGCTTTGGAGGCTCATTTATACCAAGCCTCCAAATGGCAGTATGGTAATTTTTTAGAAATTTCAATCAACTTCCCGCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_010084340.1
Location 197-490
Gene Name V2
Protein Name V2 protein
Coding Region ATGCTTGCAATTAAATACTTGCAACTTGTAGAAAATACGTATTCCCCTGATTCTCTGGGATACGACTTGATACGAGAATTAATATCCGTAGTTCGTGCCAAAAATTATGTCCAAGCGTCCGGCAGATATGATCATTTCAGGACCCGCCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCCGACGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTACAGAAGCCCTGA
Protein Sequence MLAIKYLQLVENTYSPDSLGYDLIRELISVVRAKNYVQASGRYDHFRTRLEVSSTADLNQPIQPTCCCPHCPRHKGKGMGQQAHESEAHVLQNVQKP

NCBI Accession YP_010084341.1
Location 303-1073
Gene Name V1
Protein Name V1 protein
Coding Region ATGTCCAAGCGTCCGGCAGATATGATCATTTCAGGACCCGCCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCCGACGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTACAGAAGCCCTGATGTTCCCAAGGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTCGAGTCTAGGCATGACGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACGGGTCTGACCCATAGGGTAGGTAAGCGTTTCTGCGTTAAGTCTGTCTATGTTCTGGGCAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTCTTCCTTGTTCGTGATCGTCGTCCAGTTGATAAACCTCAAGATTTTGGTGATGTGTTTAACATGTTCGACAACGAGCCGAGCACTGCAACGGTCAAGAATATGCACAGGGATCGTTACCAGGTTCTCAGGAAGTGGCATGCAACCGTGACTGGTGGTCAATATGCGTCTAAGGAGCAGGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCACAGTGAGAATGCGTTGATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTCTGAAAATACGAATCTATTTCTACGATTCGGTTACAAATTAA
Protein Sequence MSKRPADMIISGPASKYRRLLTSTSPYSRRAAVRIVRATKGKEWANRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084342.1
Location 1070-1474
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACGCATCACTGCAGCTCAGGCAACGAATGGCGTCAGTATCTTGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAGCCACGACAGCAGGCCATTCAACTCCAACACGGACCTGATAACTATCAGGGTCCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTGTTTAGGACCCAAGTGTTAAAATGTATCAATAATTTTGCTGTAATTAGCCTCAACAATGTAATTAGGGCAGTCGATCATGTATTGTGGAATGTATTAACGCAAACAGTCTATGTACAGAGTTCAAACATAATAAAATTCAATGTTTATTAA
Protein Sequence MDLRTGERITAAQATNGVSILQVPNPLYFKILSHDSRPFNSNTDLITIRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLKCINNFAVISLNNVIRAVDHVLWNVLTQTVYVQSSNIIKFNVY

NCBI Accession YP_010084343.1
Location 1215-1619
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAATCTTCGTCACCCTCACAGGCCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAGGTCCATCAGGAGGAAGAGGGTGGACCTTGACTGTGGTTGTTCCTACTACATCCATATCAACTGCAGGAACCATGGATTTACGCACAGGGGAACGCATCACTGCAGCTCAGGCAACGAATGGCGTCAGTATCTTGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAGCCACGACAGCAGGCCATTCAACTCCAACACGGACCTGATAACTATCAGGGTCCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTGTTTAG
Protein Sequence MQSSSPSQAHYTQVPIKVLHRQAKRSIRRKRVDLDCGCSYYIHINCRNHGFTHRGTHHCSSGNEWRQYLAGPKSPIFQDPQPRQQAIQLQHGPDNYQGPVQPQPSESVGDTQMFSNLPNLDDLTASDWSFLKGV

NCBI Accession YP_010084344.1
Location 1516-2640
Gene Name C1
Protein Name Rep protein
Coding Region ATGGAGTTTGGAGAGCCAATTGTCCAATTCAAAATGCCTAAAACACGGTCGTTTCAAGTTCAGGCTAAAAATATTTTTTTAACATACCCCAAATGCCCAATACCCAAAGAACAAATGTTAGAACTTATTAAGGGCATTAACTGTCCATCTGATAAACTATTTATACGGGTTGCTCAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGATTTTCAGCTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTCAATTCAGGATCCGCTGATGCCGCTTTGGCAATAATAAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAGTCTAATTTAGATAGGATTTTTGCACCTCCAAGAGAGGTTTATATTTCTCCTTTTTCTATTTCTTCTTTTGATCAAGTTCCTGATGAACTTGAAGAATGGGCTGCAGTTAATGTTGTCACTGCCGCTGCGCGGCCTATTAGGCCCATAGGAATTGTTATTGAGGGTGATAGTCGGACCGGCAAAACAATGTGGGCTAGGTCCCTCGGCCCTCACAATTATTTGTGTGGCCACTTGGACTTAAGCCCAAGAGTGTATTCAAATGACGCATGGTATAACGTCATTGATGATGTGGATCCGCATTATTTAAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAGTCCAACACCAAATACGGAAAGCCAGTTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGGCCCAACTCCAGCTATAAAGAGTTCCTGGACGAAGAAAAGCATTCCGCACTAAAACATTGGGCACTCAAGAATGCAATCTTCGTCACCCTCACAGGCCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAGGTCCATCAGGAGGAAGAGGGTGGACCTTGA
Protein Sequence MEFGEPIVQFKMPKTRSFQVQAKNIFLTYPKCPIPKEQMLELIKGINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGDFQLDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPKDFIFQYHNLKSNLDRIFAPPREVYISPFSISSFDQVPDELEEWAAVNVVTAAARPIRPIGIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKHSALKHWALKNAIFVTLTGPLYSGTNQGSPQASQEVHQEEEGGP

NCBI Accession YP_010084345.1
Location 2160-2450
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCATCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGATTTTCAGCTCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTCAATTCAGGATCCGCTGATGCCGCTTTGGCAATAA
Protein Sequence MGLCISMPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPHPMSSPTSRRTVITSTGVIFSSMEDLLEEVNRQLMMLQQRPSIQDPLMPLWQ

References More References in PubMed

1

A new begomovirus-betasatellite complex is associated with chilli leaf curl disease in Sri Lanka.

Senanayake DM, et al.  Virus Genes. 2013 Feb;46(1):128-39. doi: 10.1007/s11262-012-0836-4. Epub 2012 Oct 23.

PMID: 23090833
2

An Overview of Chili Leaf Curl Disease: Molecular Mechanisms, Impact, Challenges, and Disease Management Strategies in Indian Subcontinent.

Shingote PR, et al.  Front Microbiol. 2022 Jun 29;13:899512. doi: 10.3389/fmicb.2022.899512. eCollection 2022.

PMID: 35847087
3

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939
4

Molecular characterization to study the genetic diversity of begomoviruses occurring in the major chilli growing areas of Tamil Nadu state of India.

Jayanthi P, et al.  Int Microbiol. 2025 Apr;28(4):863-876. doi: 10.1007/s10123-024-00580-0. Epub 2024 Sep 4.

PMID: 39230779
5

Molecular characterization and multiplex PCR assay for the detection and identification of three different begomovirus species in the chilli fields of Tamil Nadu.

Padelkar P, et al.  Mol Biol Rep. 2025 Sep 20;52(1):933. doi: 10.1007/s11033-025-11038-5.

PMID: 40974375