Turnip leaf roll virus
Basic Information
| Genus |
Turncurtovirus
|
| NCBI Assembly |
GCF_001550845.1 |
| Isolate |
Iran |
| Release date |
2016/2/7 |
| Submitter |
Kamali,M., Heydarnejad,J., Massumi,H., Kvarnheden,A., Kraberger,S., Varsani,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCCAAAAAAAAAATTTGACCTGGTCAAAGCTTACGAGGTACGAGTCTTTCGACGTTAAGGAGCGGGAAATAATGCCGCCAAAACTAAAGGGGAGACAAAATGTCGTCATGTGGTCCAAAATACTTGTCTTTTTTGTTAGTGCGATTACACGTGGACTTGTACTATGTGTCTCCTAAGCTAAGCTTCGGGTATAAATATAGGTTCGGTATATTAATCGGTTATATAAAAATGATTTGGAGAGTAAATAAAGATGACAAACGGGTTAGGGCGTTTAGGTATAAAAAAAGAAGGTTTTACTCTTTAGCGGAGTATTTATTAGCCCCTTTGGCTACTCATCTTTGTAAGGGTCGTATATTTCCAGACGATAAGTATCTTGTCCCAGCGTATACCGACGAGGCGTATAGTTTCCTGGTGTTTCTTAAGGAAGAAACTCGTACACCGTTTCAGATATTGAAGGATGAGTGGAACGTGGAGTTTAAAGAGATCGAGGTGGAACTCTCCCGGTTACGATCTGGCCCCAAAGACGCCGGCGAAGAGGCCGGCGATAAGGAGGGCTCTCTTTCAATCCCCATCTCAGTATGTGGCGAGACGTCCTTGGAGGAGGACGTTTACGAGGACTAATAAAGGTGTGTCAAAGAAGAAATTAAAGGCTAGTGATTATCAGATCTATGAAGATCGAGTGGGTGGAGATAATGGATGGACAGTGACATCCACTGGTGATTGTACTATGCTCAATAATTACGTTAGAGGTATTGGTAGGGACCAGCGTGACTCGACATTGACTAAGACCGTTCATATGCATTTTAGCGGAGTATTAATGGCTAATGATGCATTTTGGGAGGCGCCTAATTATATGACTATGTATAGTTGGATCATTTTAGATAATGATCCTGGTGGTTCGTTTCCTAAACCTGCTGACATATTTGATATGACGGATAAGGATTTTCCGTCTATGTATGAAGTTGCAGAGAGTGTGAAGCCCAGGTTTATTGTTAAGAGGAAGACTCGACATTATCTTAGATCGTGTGGTGTTGCTTTTGGCGAGAAGCAGAATTACAAAGCTCCTACACTTGGACCGATTAAGAAACCCATTAGTATGGTGTTTCGTAATATGTGGCAGATGACTGAATGGAAGGACACTGCTGGTGGGAAGTATGAAGACCTAAAGAAGGGAGCTTTGTTGTTTGTTTGTATGTCTGATAATAAGGCTTCTCAATTTTCGTTTTCATTAAGGGGAAAGTGGAAGATGTATTTTATTAATAGAGATCGTTTTCAATAAAACTCCTCTTTCATTGCTACACGATATTCTTGATGGATTACATTTTCCACGAAATTGAAATCTTCAAACAATACATGGCTAATGCCATTTATAACTAGATTAAGAGAAATAACCCCAAGGTTATCAAGGTAGTGGTTGAGTCTCTTCAAGAAAATCGTTGTAAAACGCTGTCCAGTCAAACTCCGGTGACGTCCCAACGCCGTAAACTCGATCCAGCATAGGTGTATCCCCAGTTGTTTCCGTAGGTTGTAGTTGAAGCGGAGTTGTATTCTGATGTTGAACCACCCGCTCTCGCGGTGGTCCCATGATATGAGTTTGAGGTAAAATGGATTCTTGGTTTGATGCGTGTAGATCCCAATCGTTGATTGACGATGCGTTATAGGTTCCCCTGTGCGTAAATCCCTCACCACAGCCATGATGTATTGTGAATTTGCACTTACACGGTAGGTGGATCGTCTTCGGCTTCTTCGATATTCTCGTTATCGTAGAGAGGCTCCGTGATAGTGGTGAAGGCTGAATTTTGTATCGTCCAGGATTTAAGGGCTTCATTCTCTGACTTATCTAGGAAGTCTTTATAAGAAGCTCCGTCTCCTGGGTTGCATAAAATAATAGAGGGAACCCCCCCTTTTATAATACGTGGTTTACCGTATTTGAGGTTTGTCTGCCACTCCTTTTGTGCACCAATGAGATGCTTCCAGTGTTTCATCTTTAGATAGTGCGGATCGACGTCATCGATTACGTTGTATTCCACATCGTCGTGATATACACGCGCAGAGAAGTCTAGGTGTCCGGTGATGTAGTTATGTGTTCCTAGCGATCTAGCCCAAAGGGTTTTGCCAGTTCTTGATGGACCTTCGATGATTATTGATTGAGGACGCTCTATCGAAGGAATTCGCTTATGTTTTGTCGGCCCCGCAGGGGAAGAGGCTTCTTCTAAAATGAAATTGTTGTTCACCCATTGCCGTATTTCTTCTGGAATGTTGAATTGGGTGTGCGTAAATGGTGGTGTGTAAACTGCAGGTGGCGGTGCGAATATAGCGGCGAGGTTTGGTTTGAGGTTATGGTATTTGAATAGAAAATCGTGAGGCAGTTTCTCACGAATAATTGCCAACGCCGCTTCCGCCGATGCTGCGTTTAGTGCTTCTGCAGATGCATCATTAACCGTCTGTTGACCTCCTCTTGCAGATCGACCATCGATTTGAAATTGACCCCAGTCGAGGTAATCTCCGTCTTTTTCGATATAGGACTTGACGTCGGAGCTAGATTTAGCTCCCTGGATATTTGGGTGGAAGCTTCTACTGGCACTTGGATGCCGTAAATCGAAGTGACGGGGGTTACAGATTTGTACTTTTCCTTCGAATTGGATAAGCACATGGAGATGAGGTTCCCCATTCTCGTGTAGTTCTCTTGAGATACGGATGAATTTCTTGTTAGATGGACAGGCGAGGTTCTGCAGCTGCTCTAAGGCTTCGTCCTTGGAGAGAGTACAGTGTGGAAAAGTAAGAAAGATGTTTTTAGCTTGGATGCGATATTGCTTGTTAGTCCTCCCCATTTATTTATTTGCACAATGAATCGGAGTATCTCAAATTTCTCATTCTATTGGAGTAACGGAGTATCATATATAGTGTCTCTAAAATCCTTGTCGCGTAGCGAGTGTTGGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009226623.1
|
|
Location
|
238-630 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGATTTGGAGAGTAAATAAAGATGACAAACGGGTTAGGGCGTTTAGGTATAAAAAAAGAAGGTTTTACTCTTTAGCGGAGTATTTATTAGCCCCTTTGGCTACTCATCTTTGTAAGGGTCGTATATTTCCAGACGATAAGTATCTTGTCCCAGCGTATACCGACGAGGCGTATAGTTTCCTGGTGTTTCTTAAGGAAGAAACTCGTACACCGTTTCAGATATTGAAGGATGAGTGGAACGTGGAGTTTAAAGAGATCGAGGTGGAACTCTCCCGGTTACGATCTGGCCCCAAAGACGCCGGCGAAGAGGCCGGCGATAAGGAGGGCTCTCTTTCAATCCCCATCTCAGTATGTGGCGAGACGTCCTTGGAGGAGGACGTTTACGAGGACTAA |
|
Protein Sequence
|
MIWRVNKDDKRVRAFRYKKRRFYSLAEYLLAPLATHLCKGRIFPDDKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRSGPKDAGEEAGDKEGSLSIPISVCGETSLEEDVYED |
|
NCBI Accession
|
YP_009226624.1
|
|
Location
|
467-1288 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGTGGAACGTGGAGTTTAAAGAGATCGAGGTGGAACTCTCCCGGTTACGATCTGGCCCCAAAGACGCCGGCGAAGAGGCCGGCGATAAGGAGGGCTCTCTTTCAATCCCCATCTCAGTATGTGGCGAGACGTCCTTGGAGGAGGACGTTTACGAGGACTAATAAAGGTGTGTCAAAGAAGAAATTAAAGGCTAGTGATTATCAGATCTATGAAGATCGAGTGGGTGGAGATAATGGATGGACAGTGACATCCACTGGTGATTGTACTATGCTCAATAATTACGTTAGAGGTATTGGTAGGGACCAGCGTGACTCGACATTGACTAAGACCGTTCATATGCATTTTAGCGGAGTATTAATGGCTAATGATGCATTTTGGGAGGCGCCTAATTATATGACTATGTATAGTTGGATCATTTTAGATAATGATCCTGGTGGTTCGTTTCCTAAACCTGCTGACATATTTGATATGACGGATAAGGATTTTCCGTCTATGTATGAAGTTGCAGAGAGTGTGAAGCCCAGGTTTATTGTTAAGAGGAAGACTCGACATTATCTTAGATCGTGTGGTGTTGCTTTTGGCGAGAAGCAGAATTACAAAGCTCCTACACTTGGACCGATTAAGAAACCCATTAGTATGGTGTTTCGTAATATGTGGCAGATGACTGAATGGAAGGACACTGCTGGTGGGAAGTATGAAGACCTAAAGAAGGGAGCTTTGTTGTTTGTTTGTATGTCTGATAATAAGGCTTCTCAATTTTCGTTTTCATTAAGGGGAAAGTGGAAGATGTATTTTATTAATAGAGATCGTTTTCAATAA |
|
Protein Sequence
|
MSGTWSLKRSRWNSPGYDLAPKTPAKRPAIRRALFQSPSQYVARRPWRRTFTRTNKGVSKKKLKASDYQIYEDRVGGDNGWTVTSTGDCTMLNNYVRGIGRDQRDSTLTKTVHMHFSGVLMANDAFWEAPNYMTMYSWIILDNDPGGSFPKPADIFDMTDKDFPSMYEVAESVKPRFIVKRKTRHYLRSCGVAFGEKQNYKAPTLGPIKKPISMVFRNMWQMTEWKDTAGGKYEDLKKGALLFVCMSDNKASQFSFSLRGKWKMYFINRDRFQ |
|
NCBI Accession
|
YP_009226625.1
|
|
Location
|
1282-1704 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGCTGTGGTGAGGGATTTACGCACAGGGGAACCTATAACGCATCGTCAATCAACGATTGGGATCTACACGCATCAAACCAAGAATCCATTTTACCTCAAACTCATATCATGGGACCACCGCGAGAGCGGGTGGTTCAACATCAGAATACAACTCCGCTTCAACTACAACCTACGGAAACAACTGGGGATACACCTATGCTGGATCGAGTTTACGGCGTTGGGACGTCACCGGAGTTTGACTGGACAGCGTTTTACAACGATTTTCTTGAAGAGACTCAACCACTACCTTGATAACCTTGGGGTTATTTCTCTTAATCTAGTTATAAATGGCATTAGCCATGTATTGTTTGAAGATTTCAATTTCGTGGAAAATGTAATCCATCAAGAATATCGTGTAGCAATGAAAGAGGAGTTTTATTGA |
|
Protein Sequence
|
MAVVRDLRTGEPITHRQSTIGIYTHQTKNPFYLKLISWDHRESGWFNIRIQLRFNYNLRKQLGIHLCWIEFTALGRHRSLTGQRFTTIFLKRLNHYLDNLGVISLNLVINGISHVLFEDFNFVENVIHQEYRVAMKEEFY |
|
NCBI Accession
|
YP_009226626.1
|
|
Location
|
1412-1837 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGAAGCCCTTAAATCCTGGACGATACAAAATTCAGCCTTCACCACTATCACGGAGCCTCTCTACGATAACGAGAATATCGAAGAAGCCGAAGACGATCCACCTACCGTGTAAGTGCAAATTCACAATACATCATGGCTGTGGTGAGGGATTTACGCACAGGGGAACCTATAACGCATCGTCAATCAACGATTGGGATCTACACGCATCAAACCAAGAATCCATTTTACCTCAAACTCATATCATGGGACCACCGCGAGAGCGGGTGGTTCAACATCAGAATACAACTCCGCTTCAACTACAACCTACGGAAACAACTGGGGATACACCTATGCTGGATCGAGTTTACGGCGTTGGGACGTCACCGGAGTTTGACTGGACAGCGTTTTACAACGATTTTCTTGAAGAGACTCAACCACTACCTTGA |
|
Protein Sequence
|
MKPLNPGRYKIQPSPLSRSLSTITRISKKPKTIHLPCKCKFTIHHGCGEGFTHRGTYNASSINDWDLHASNQESILPQTHIMGPPRERVVQHQNTTPLQLQPTETTGDTPMLDRVYGVGTSPEFDWTAFYNDFLEETQPLP |
|
NCBI Accession
|
YP_009226627.1
|
|
Location
|
1725-2840 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGGGGAGGACTAACAAGCAATATCGCATCCAAGCTAAAAACATCTTTCTTACTTTTCCACACTGTACTCTCTCCAAGGACGAAGCCTTAGAGCAGCTGCAGAACCTCGCCTGTCCATCTAACAAGAAATTCATCCGTATCTCAAGAGAACTACACGAGAATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAAGGAAAAGTACAAATCTGTAACCCCCGTCACTTCGATTTACGGCATCCAAGTGCCAGTAGAAGCTTCCACCCAAATATCCAGGGAGCTAAATCTAGCTCCGACGTCAAGTCCTATATCGAAAAAGACGGAGATTACCTCGACTGGGGTCAATTTCAAATCGATGGTCGATCTGCAAGAGGAGGTCAACAGACGGTTAATGATGCATCTGCAGAAGCACTAAACGCAGCATCGGCGGAAGCGGCGTTGGCAATTATTCGTGAGAAACTGCCTCACGATTTTCTATTCAAATACCATAACCTCAAACCAAACCTCGCCGCTATATTCGCACCGCCACCTGCAGTTTACACACCACCATTTACGCACACCCAATTCAACATTCCAGAAGAAATACGGCAATGGGTGAACAACAATTTCATTTTAGAAGAAGCCTCTTCCCCTGCGGGGCCGACAAAACATAAGCGAATTCCTTCGATAGAGCGTCCTCAATCAATAATCATCGAAGGTCCATCAAGAACTGGCAAAACCCTTTGGGCTAGATCGCTAGGAACACATAACTACATCACCGGACACCTAGACTTCTCTGCGCGTGTATATCACGACGATGTGGAATACAACGTAATCGATGACGTCGATCCGCACTATCTAAAGATGAAACACTGGAAGCATCTCATTGGTGCACAAAAGGAGTGGCAGACAAACCTCAAATACGGTAAACCACGTATTATAAAAGGGGGGGTTCCCTCTATTATTTTATGCAACCCAGGAGACGGAGCTTCTTATAAAGACTTCCTAGATAAGTCAGAGAATGAAGCCCTTAAATCCTGGACGATACAAAATTCAGCCTTCACCACTATCACGGAGCCTCTCTACGATAACGAGAATATCGAAGAAGCCGAAGACGATCCACCTACCGTGTAA |
|
Protein Sequence
|
MGRTNKQYRIQAKNIFLTFPHCTLSKDEALEQLQNLACPSNKKFIRISRELHENGEPHLHVLIQFEGKVQICNPRHFDLRHPSASRSFHPNIQGAKSSSDVKSYIEKDGDYLDWGQFQIDGRSARGGQQTVNDASAEALNAASAEAALAIIREKLPHDFLFKYHNLKPNLAAIFAPPPAVYTPPFTHTQFNIPEEIRQWVNNNFILEEASSPAGPTKHKRIPSIERPQSIIIEGPSRTGKTLWARSLGTHNYITGHLDFSARVYHDDVEYNVIDDVDPHYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGVPSIILCNPGDGASYKDFLDKSENEALKSWTIQNSAFTTITEPLYDNENIEEAEDDPPTV |
|
NCBI Accession
|
YP_009226628.1
|
|
Location
|
2423-2680 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAAGGAAAAGTACAAATCTGTAACCCCCGTCACTTCGATTTACGGCATCCAAGTGCCAGTAGAAGCTTCCACCCAAATATCCAGGGAGCTAAATCTAGCTCCGACGTCAAGTCCTATATCGAAAAAGACGGAGATTACCTCGACTGGGGTCAATTTCAAATCGATGGTCGATCTGCAAGAGGAGGTCAACAGACGGTTAATGATGCATCTGCAGAAGCACTAA |
|
Protein Sequence
|
MGNLISMCLSNSKEKYKSVTPVTSIYGIQVPVEASTQISRELNLAPTSSPISKKTEITSTGVNFKSMVDLQEEVNRRLMMHLQKH |