Turnip leaf roll virus

Basic Information

Genus Turncurtovirus
NCBI Assembly GCF_001550845.1
Isolate Iran
Release date 2016/2/7
Submitter Kamali,M., Heydarnejad,J., Massumi,H., Kvarnheden,A., Kraberger,S., Varsani,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_029117
ACCGGATGGCCCAAAAAAAAAATTTGACCTGGTCAAAGCTTACGAGGTACGAGTCTTTCGACGTTAAGGAGCGGGAAATAATGCCGCCAAAACTAAAGGGGAGACAAAATGTCGTCATGTGGTCCAAAATACTTGTCTTTTTTGTTAGTGCGATTACACGTGGACTTGTACTATGTGTCTCCTAAGCTAAGCTTCGGGTATAAATATAGGTTCGGTATATTAATCGGTTATATAAAAATGATTTGGAGAGTAAATAAAGATGACAAACGGGTTAGGGCGTTTAGGTATAAAAAAAGAAGGTTTTACTCTTTAGCGGAGTATTTATTAGCCCCTTTGGCTACTCATCTTTGTAAGGGTCGTATATTTCCAGACGATAAGTATCTTGTCCCAGCGTATACCGACGAGGCGTATAGTTTCCTGGTGTTTCTTAAGGAAGAAACTCGTACACCGTTTCAGATATTGAAGGATGAGTGGAACGTGGAGTTTAAAGAGATCGAGGTGGAACTCTCCCGGTTACGATCTGGCCCCAAAGACGCCGGCGAAGAGGCCGGCGATAAGGAGGGCTCTCTTTCAATCCCCATCTCAGTATGTGGCGAGACGTCCTTGGAGGAGGACGTTTACGAGGACTAATAAAGGTGTGTCAAAGAAGAAATTAAAGGCTAGTGATTATCAGATCTATGAAGATCGAGTGGGTGGAGATAATGGATGGACAGTGACATCCACTGGTGATTGTACTATGCTCAATAATTACGTTAGAGGTATTGGTAGGGACCAGCGTGACTCGACATTGACTAAGACCGTTCATATGCATTTTAGCGGAGTATTAATGGCTAATGATGCATTTTGGGAGGCGCCTAATTATATGACTATGTATAGTTGGATCATTTTAGATAATGATCCTGGTGGTTCGTTTCCTAAACCTGCTGACATATTTGATATGACGGATAAGGATTTTCCGTCTATGTATGAAGTTGCAGAGAGTGTGAAGCCCAGGTTTATTGTTAAGAGGAAGACTCGACATTATCTTAGATCGTGTGGTGTTGCTTTTGGCGAGAAGCAGAATTACAAAGCTCCTACACTTGGACCGATTAAGAAACCCATTAGTATGGTGTTTCGTAATATGTGGCAGATGACTGAATGGAAGGACACTGCTGGTGGGAAGTATGAAGACCTAAAGAAGGGAGCTTTGTTGTTTGTTTGTATGTCTGATAATAAGGCTTCTCAATTTTCGTTTTCATTAAGGGGAAAGTGGAAGATGTATTTTATTAATAGAGATCGTTTTCAATAAAACTCCTCTTTCATTGCTACACGATATTCTTGATGGATTACATTTTCCACGAAATTGAAATCTTCAAACAATACATGGCTAATGCCATTTATAACTAGATTAAGAGAAATAACCCCAAGGTTATCAAGGTAGTGGTTGAGTCTCTTCAAGAAAATCGTTGTAAAACGCTGTCCAGTCAAACTCCGGTGACGTCCCAACGCCGTAAACTCGATCCAGCATAGGTGTATCCCCAGTTGTTTCCGTAGGTTGTAGTTGAAGCGGAGTTGTATTCTGATGTTGAACCACCCGCTCTCGCGGTGGTCCCATGATATGAGTTTGAGGTAAAATGGATTCTTGGTTTGATGCGTGTAGATCCCAATCGTTGATTGACGATGCGTTATAGGTTCCCCTGTGCGTAAATCCCTCACCACAGCCATGATGTATTGTGAATTTGCACTTACACGGTAGGTGGATCGTCTTCGGCTTCTTCGATATTCTCGTTATCGTAGAGAGGCTCCGTGATAGTGGTGAAGGCTGAATTTTGTATCGTCCAGGATTTAAGGGCTTCATTCTCTGACTTATCTAGGAAGTCTTTATAAGAAGCTCCGTCTCCTGGGTTGCATAAAATAATAGAGGGAACCCCCCCTTTTATAATACGTGGTTTACCGTATTTGAGGTTTGTCTGCCACTCCTTTTGTGCACCAATGAGATGCTTCCAGTGTTTCATCTTTAGATAGTGCGGATCGACGTCATCGATTACGTTGTATTCCACATCGTCGTGATATACACGCGCAGAGAAGTCTAGGTGTCCGGTGATGTAGTTATGTGTTCCTAGCGATCTAGCCCAAAGGGTTTTGCCAGTTCTTGATGGACCTTCGATGATTATTGATTGAGGACGCTCTATCGAAGGAATTCGCTTATGTTTTGTCGGCCCCGCAGGGGAAGAGGCTTCTTCTAAAATGAAATTGTTGTTCACCCATTGCCGTATTTCTTCTGGAATGTTGAATTGGGTGTGCGTAAATGGTGGTGTGTAAACTGCAGGTGGCGGTGCGAATATAGCGGCGAGGTTTGGTTTGAGGTTATGGTATTTGAATAGAAAATCGTGAGGCAGTTTCTCACGAATAATTGCCAACGCCGCTTCCGCCGATGCTGCGTTTAGTGCTTCTGCAGATGCATCATTAACCGTCTGTTGACCTCCTCTTGCAGATCGACCATCGATTTGAAATTGACCCCAGTCGAGGTAATCTCCGTCTTTTTCGATATAGGACTTGACGTCGGAGCTAGATTTAGCTCCCTGGATATTTGGGTGGAAGCTTCTACTGGCACTTGGATGCCGTAAATCGAAGTGACGGGGGTTACAGATTTGTACTTTTCCTTCGAATTGGATAAGCACATGGAGATGAGGTTCCCCATTCTCGTGTAGTTCTCTTGAGATACGGATGAATTTCTTGTTAGATGGACAGGCGAGGTTCTGCAGCTGCTCTAAGGCTTCGTCCTTGGAGAGAGTACAGTGTGGAAAAGTAAGAAAGATGTTTTTAGCTTGGATGCGATATTGCTTGTTAGTCCTCCCCATTTATTTATTTGCACAATGAATCGGAGTATCTCAAATTTCTCATTCTATTGGAGTAACGGAGTATCATATATAGTGTCTCTAAAATCCTTGTCGCGTAGCGAGTGTTGGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009226623.1
Location 238-630
Protein Name V2
Coding Region ATGATTTGGAGAGTAAATAAAGATGACAAACGGGTTAGGGCGTTTAGGTATAAAAAAAGAAGGTTTTACTCTTTAGCGGAGTATTTATTAGCCCCTTTGGCTACTCATCTTTGTAAGGGTCGTATATTTCCAGACGATAAGTATCTTGTCCCAGCGTATACCGACGAGGCGTATAGTTTCCTGGTGTTTCTTAAGGAAGAAACTCGTACACCGTTTCAGATATTGAAGGATGAGTGGAACGTGGAGTTTAAAGAGATCGAGGTGGAACTCTCCCGGTTACGATCTGGCCCCAAAGACGCCGGCGAAGAGGCCGGCGATAAGGAGGGCTCTCTTTCAATCCCCATCTCAGTATGTGGCGAGACGTCCTTGGAGGAGGACGTTTACGAGGACTAA
Protein Sequence MIWRVNKDDKRVRAFRYKKRRFYSLAEYLLAPLATHLCKGRIFPDDKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRSGPKDAGEEAGDKEGSLSIPISVCGETSLEEDVYED

NCBI Accession YP_009226624.1
Location 467-1288
Protein Name coat protein
Coding Region ATGAGTGGAACGTGGAGTTTAAAGAGATCGAGGTGGAACTCTCCCGGTTACGATCTGGCCCCAAAGACGCCGGCGAAGAGGCCGGCGATAAGGAGGGCTCTCTTTCAATCCCCATCTCAGTATGTGGCGAGACGTCCTTGGAGGAGGACGTTTACGAGGACTAATAAAGGTGTGTCAAAGAAGAAATTAAAGGCTAGTGATTATCAGATCTATGAAGATCGAGTGGGTGGAGATAATGGATGGACAGTGACATCCACTGGTGATTGTACTATGCTCAATAATTACGTTAGAGGTATTGGTAGGGACCAGCGTGACTCGACATTGACTAAGACCGTTCATATGCATTTTAGCGGAGTATTAATGGCTAATGATGCATTTTGGGAGGCGCCTAATTATATGACTATGTATAGTTGGATCATTTTAGATAATGATCCTGGTGGTTCGTTTCCTAAACCTGCTGACATATTTGATATGACGGATAAGGATTTTCCGTCTATGTATGAAGTTGCAGAGAGTGTGAAGCCCAGGTTTATTGTTAAGAGGAAGACTCGACATTATCTTAGATCGTGTGGTGTTGCTTTTGGCGAGAAGCAGAATTACAAAGCTCCTACACTTGGACCGATTAAGAAACCCATTAGTATGGTGTTTCGTAATATGTGGCAGATGACTGAATGGAAGGACACTGCTGGTGGGAAGTATGAAGACCTAAAGAAGGGAGCTTTGTTGTTTGTTTGTATGTCTGATAATAAGGCTTCTCAATTTTCGTTTTCATTAAGGGGAAAGTGGAAGATGTATTTTATTAATAGAGATCGTTTTCAATAA
Protein Sequence MSGTWSLKRSRWNSPGYDLAPKTPAKRPAIRRALFQSPSQYVARRPWRRTFTRTNKGVSKKKLKASDYQIYEDRVGGDNGWTVTSTGDCTMLNNYVRGIGRDQRDSTLTKTVHMHFSGVLMANDAFWEAPNYMTMYSWIILDNDPGGSFPKPADIFDMTDKDFPSMYEVAESVKPRFIVKRKTRHYLRSCGVAFGEKQNYKAPTLGPIKKPISMVFRNMWQMTEWKDTAGGKYEDLKKGALLFVCMSDNKASQFSFSLRGKWKMYFINRDRFQ

NCBI Accession YP_009226625.1
Location 1282-1704
Protein Name C3
Coding Region ATGGCTGTGGTGAGGGATTTACGCACAGGGGAACCTATAACGCATCGTCAATCAACGATTGGGATCTACACGCATCAAACCAAGAATCCATTTTACCTCAAACTCATATCATGGGACCACCGCGAGAGCGGGTGGTTCAACATCAGAATACAACTCCGCTTCAACTACAACCTACGGAAACAACTGGGGATACACCTATGCTGGATCGAGTTTACGGCGTTGGGACGTCACCGGAGTTTGACTGGACAGCGTTTTACAACGATTTTCTTGAAGAGACTCAACCACTACCTTGATAACCTTGGGGTTATTTCTCTTAATCTAGTTATAAATGGCATTAGCCATGTATTGTTTGAAGATTTCAATTTCGTGGAAAATGTAATCCATCAAGAATATCGTGTAGCAATGAAAGAGGAGTTTTATTGA
Protein Sequence MAVVRDLRTGEPITHRQSTIGIYTHQTKNPFYLKLISWDHRESGWFNIRIQLRFNYNLRKQLGIHLCWIEFTALGRHRSLTGQRFTTIFLKRLNHYLDNLGVISLNLVINGISHVLFEDFNFVENVIHQEYRVAMKEEFY

NCBI Accession YP_009226626.1
Location 1412-1837
Protein Name C2
Coding Region ATGAAGCCCTTAAATCCTGGACGATACAAAATTCAGCCTTCACCACTATCACGGAGCCTCTCTACGATAACGAGAATATCGAAGAAGCCGAAGACGATCCACCTACCGTGTAAGTGCAAATTCACAATACATCATGGCTGTGGTGAGGGATTTACGCACAGGGGAACCTATAACGCATCGTCAATCAACGATTGGGATCTACACGCATCAAACCAAGAATCCATTTTACCTCAAACTCATATCATGGGACCACCGCGAGAGCGGGTGGTTCAACATCAGAATACAACTCCGCTTCAACTACAACCTACGGAAACAACTGGGGATACACCTATGCTGGATCGAGTTTACGGCGTTGGGACGTCACCGGAGTTTGACTGGACAGCGTTTTACAACGATTTTCTTGAAGAGACTCAACCACTACCTTGA
Protein Sequence MKPLNPGRYKIQPSPLSRSLSTITRISKKPKTIHLPCKCKFTIHHGCGEGFTHRGTYNASSINDWDLHASNQESILPQTHIMGPPRERVVQHQNTTPLQLQPTETTGDTPMLDRVYGVGTSPEFDWTAFYNDFLEETQPLP

NCBI Accession YP_009226627.1
Location 1725-2840
Protein Name Rep
Coding Region ATGGGGAGGACTAACAAGCAATATCGCATCCAAGCTAAAAACATCTTTCTTACTTTTCCACACTGTACTCTCTCCAAGGACGAAGCCTTAGAGCAGCTGCAGAACCTCGCCTGTCCATCTAACAAGAAATTCATCCGTATCTCAAGAGAACTACACGAGAATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAAGGAAAAGTACAAATCTGTAACCCCCGTCACTTCGATTTACGGCATCCAAGTGCCAGTAGAAGCTTCCACCCAAATATCCAGGGAGCTAAATCTAGCTCCGACGTCAAGTCCTATATCGAAAAAGACGGAGATTACCTCGACTGGGGTCAATTTCAAATCGATGGTCGATCTGCAAGAGGAGGTCAACAGACGGTTAATGATGCATCTGCAGAAGCACTAAACGCAGCATCGGCGGAAGCGGCGTTGGCAATTATTCGTGAGAAACTGCCTCACGATTTTCTATTCAAATACCATAACCTCAAACCAAACCTCGCCGCTATATTCGCACCGCCACCTGCAGTTTACACACCACCATTTACGCACACCCAATTCAACATTCCAGAAGAAATACGGCAATGGGTGAACAACAATTTCATTTTAGAAGAAGCCTCTTCCCCTGCGGGGCCGACAAAACATAAGCGAATTCCTTCGATAGAGCGTCCTCAATCAATAATCATCGAAGGTCCATCAAGAACTGGCAAAACCCTTTGGGCTAGATCGCTAGGAACACATAACTACATCACCGGACACCTAGACTTCTCTGCGCGTGTATATCACGACGATGTGGAATACAACGTAATCGATGACGTCGATCCGCACTATCTAAAGATGAAACACTGGAAGCATCTCATTGGTGCACAAAAGGAGTGGCAGACAAACCTCAAATACGGTAAACCACGTATTATAAAAGGGGGGGTTCCCTCTATTATTTTATGCAACCCAGGAGACGGAGCTTCTTATAAAGACTTCCTAGATAAGTCAGAGAATGAAGCCCTTAAATCCTGGACGATACAAAATTCAGCCTTCACCACTATCACGGAGCCTCTCTACGATAACGAGAATATCGAAGAAGCCGAAGACGATCCACCTACCGTGTAA
Protein Sequence MGRTNKQYRIQAKNIFLTFPHCTLSKDEALEQLQNLACPSNKKFIRISRELHENGEPHLHVLIQFEGKVQICNPRHFDLRHPSASRSFHPNIQGAKSSSDVKSYIEKDGDYLDWGQFQIDGRSARGGQQTVNDASAEALNAASAEAALAIIREKLPHDFLFKYHNLKPNLAAIFAPPPAVYTPPFTHTQFNIPEEIRQWVNNNFILEEASSPAGPTKHKRIPSIERPQSIIIEGPSRTGKTLWARSLGTHNYITGHLDFSARVYHDDVEYNVIDDVDPHYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGVPSIILCNPGDGASYKDFLDKSENEALKSWTIQNSAFTTITEPLYDNENIEEAEDDPPTV

NCBI Accession YP_009226628.1
Location 2423-2680
Protein Name C4
Coding Region ATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAAGGAAAAGTACAAATCTGTAACCCCCGTCACTTCGATTTACGGCATCCAAGTGCCAGTAGAAGCTTCCACCCAAATATCCAGGGAGCTAAATCTAGCTCCGACGTCAAGTCCTATATCGAAAAAGACGGAGATTACCTCGACTGGGGTCAATTTCAAATCGATGGTCGATCTGCAAGAGGAGGTCAACAGACGGTTAATGATGCATCTGCAGAAGCACTAA
Protein Sequence MGNLISMCLSNSKEKYKSVTPVTSIYGIQVPVEASTQISRELNLAPTSSPISKKTEITSTGVNFKSMVDLQEEVNRRLMMHLQKH

References More References in PubMed

1

Time of movement of potato leaf-roll and turnip-latent viruses out of leaves of Physalis floridana Rydb.

MACKINNON JP.  Can J Microbiol. 1960 Dec;6:679-80. doi: 10.1139/m60-081.

PMID: 13764931
2

Molecular diversity of turncurtoviruses in Iran.

Kamali M, et al.  Arch Virol. 2016 Mar;161(3):551-61. doi: 10.1007/s00705-015-2686-6. Epub 2015 Nov 26.

PMID: 26611911
3

Isolation and analysis of small RNAs from virus-infected plants.

Curtin SJ, et al.  Methods Mol Biol. 2012;894:173-89. doi: 10.1007/978-1-61779-882-5_12.

PMID: 22678580
4

Identification of a new turncurtovirus in the leafhopper Circulifer haematoceps and the host plant species Sesamum indicum.

Hasanvand V, et al.  Virus Genes. 2018 Dec;54(6):840-845. doi: 10.1007/s11262-018-1604-x. Epub 2018 Oct 11.

PMID: 30311179
5

A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies.

Blouin AG, et al.  Mol Ecol Resour. 2016 Sep;16(5):1255-63. doi: 10.1111/1755-0998.12525. Epub 2016 Apr 4.

PMID: 26990372
6

The second face of a known player: Arabidopsis silencing suppressor AtXRN4 acts organ-specifically.

Vogel F, et al.  New Phytol. 2011 Jan;189(2):484-93. doi: 10.1111/j.1469-8137.2010.03482.x. Epub 2010 Oct 6.

PMID: 21039560
7

First Report of Soybean dwarf virus (Genus Luteovirus) Infecting Faba Bean and Clover in Germany.

Abraham AD, et al.  Plant Dis. 2007 Aug;91(8):1059. doi: 10.1094/PDIS-91-8-1059B.

PMID: 30780466
8

The establishment of rat hybridoma cell lines secreting McAb against strains of potato virus Y and analysis of its stability.

Guo J, et al.  Chin J Biotechnol. 1990;6(3):215-22.

PMID: 2104212