Chilli leaf curl Kanpur virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002821825.1 |
| Isolate |
India: Kanpur |
| Release date |
2018/8/25 |
| Submitter |
Singh,A.K., Chattopadhyay,B., Chakraborty,S., Khan,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTCGTGTGGGCCCCACAACACACGTGCTGACAATGACATGTGGACCAATTAAAAATGTCCCTCATAGCTTAATTATTCAATTTTCCCCTATTTAAACTTGGTCCCCAAGTATTGCACACATACCAATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGACACTCTCGGTTACGATTTAATCAGGGATTTGATCTCGGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCCTTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACGCGTGGTACTGGTCTGACCCACAGAGTTGGTAAAAGGTTCTGTGTTAAGTCTGTTTATGTTCTGGGCAAGATTTGGATGGATGAGAATATAAAGACTAAGAATCATACGAATAGTGTTATGTTTTTTCTGGTTAGGGATCGTAGGCCCGTTGATAAGCCTCAAGATTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCTAGTACGGCTACCGTGAAGAATGTGCACCGTGATAGGTACCAGGTGTTGAGGAAGTGGCATGCAACCGTTACAGGTGGTCAATACGCATCAAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTAATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACTTTAAAGATACGGATTTATTTTTATGACTCTGTAACCAACTGAAATTAATAAAGATTGAATTTTATTATGTTTGAACTCTGTACATGAATTGTTTGCGCTATTACATTCCATAATACATGATCGATAGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAATACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACCGTACTTGGACTGTTATGATGTCGTGGTTCCTCATGAATGGCCGGTGGTGGTGGTCGATTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGGAATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAGTATGAACAGCCGCAGTCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCCTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCGCCTTTAATTTGAACTGGCTTGCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTATTATAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGACCTAGTGACCTGGCCCACATTGTCTTGCCCGTTCTACTGTCGCCCTCTATTACTATACTCATGGGTCGTAATGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCACTCTTCAAGTTCTTGTGGAACTTGATCAAAAGAAGAAGAACAAAAAGGAGAAACATAGACCTCCACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGCTAACGCCGCTTCAGCAGAACCCGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCGTCCATCGATCTGAAACCGACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGGGTGGCGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAATTTGGATTTACCTTTGAATTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTGATAAATAATTTATCAGATGGGCAATTTATTGACTGAAGAAGTTCGAGCATTTGCTCTTTCGGAATTGGGCATTTGGGATAAGTAAGGAAGATATTTTTAGCATTAACACAAAACGACTGCGTTCGAGGCATATTGAATTGGGGACACTCAAAACTCTATGGAATGGGGGACACCGGGGACGCATTTATATGGTGTCCCCAAATGGCAAATTTGTAATTTGCCCAACTTTAATTCAAATTCCCGTGAATAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009506384.1
|
|
Location
|
146-502 |
|
Gene Name
|
AV2 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGACACTCTCGGTTACGATTTAATCAGGGATTTGATCTCGGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQEAQDVQDVQKPRCS |
|
NCBI Accession
|
YP_009506385.1
|
|
Location
|
306-1076 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCCTTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACGCGTGGTACTGGTCTGACCCACAGAGTTGGTAAAAGGTTCTGTGTTAAGTCTGTTTATGTTCTGGGCAAGATTTGGATGGATGAGAATATAAAGACTAAGAATCATACGAATAGTGTTATGTTTTTTCTGGTTAGGGATCGTAGGCCCGTTGATAAGCCTCAAGATTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCTAGTACGGCTACCGTGAAGAATGTGCACCGTGATAGGTACCAGGTGTTGAGGAAGTGGCATGCAACCGTTACAGGTGGTCAATACGCATCAAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTAATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACTTTAAAGATACGGATTTATTTTTATGACTCTGTAACCAACTGA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009506386.1
|
|
Location
|
1079-1483 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATTCCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAATCGACCACCACCACCGGCCATTCATGAGGAACCACGACATCATAACAGTCCAAGTACGGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTATTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCTATCGATCATGTATTATGGAATGTAATAGCGCAAACAATTCATGTACAGAGTTCAAACATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAAQAENSVFIWEITNPLYFKIIDHHHRPFMRNHDIITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINNVIRAIDHVLWNVIAQTIHVQSSNIIKFNLY |
|
NCBI Accession
|
YP_009506387.1
|
|
Location
|
1224-1628 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP |
|
Coding Region
|
ATGCGACCTTCATCACCCTCGAGGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATACTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATTCCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAATCGACCACCACCACCGGCCATTCATGAGGAACCACGACATCATAACAGTCCAAGTACGGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG |
|
Protein Sequence
|
MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRPPPPAIHEEPRHHNSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI |
|
NCBI Accession
|
YP_009506388.1
|
|
Location
|
1531-2616 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGCCTCGAACGCAGTCGTTTTGTGTTAATGCTAAAAATATCTTCCTTACTTATCCCAAATGCCCAATTCCGAAAGAGCAAATGCTCGAACTTCTTCAGTCAATAAATTGCCCATCTGATAAATTATTTATCAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCAAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCGGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCTGCTGAAGCGGCGTTAGCAATAATAAGGGAAAAACTCCCAAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTGGAGGTCTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCACAAGAACTTGAAGAGTGGGCTGCTGAGAACGTCGTCAGTGCCGCTGCGCGGCCATTACGACCCATGAGTATAGTAATAGAGGGCGACAGTAGAACGGGCAAGACAATGTGGGCCAGGTCACTAGGTCCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTATAATAATGACGCCTGGTACAACGTCATTGATGACGTCGACCCGCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAGGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA |
|
Protein Sequence
|
MPRTQSFCVNAKNIFLTYPKCPIPKEQMLELLQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYIEKDSDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFCSSSFDQVPQELEEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSAAQASQEGDQASSR |
|
NCBI Accession
|
YP_009506389.1
|
|
Location
|
2202-2459 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCAAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCGGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA |
|
Protein Sequence
|
MGLCISMPSSNSKVNPNSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVGFRSMDDLLEEVNRQLMMLQQRP |