Turnip curly top virus


Basic Information

Genus Turncurtovirus
NCBI Assembly GCF_000887455.1
Isolate Iran
Release date 2015/2/22
Submitter Briddon,R.W., Heydarnejad,J., Khosrowfar,F., Massumi,H., Martin,D.P., Varsani,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_014324
ACCGGATGGCCCAAAAAAAAATTTTTGGCGCGTGTTTTGATGGTGACAGGTGCGTAGTGGAGAAGCCGCGCCAAAGTGAAAGTAAAGACGATTAGTCTTGGTCGTGTGGTCCCAAAGGTAAAGTATTAAAGATTGGTTATTGAGTGCGATTACACGTGTATCTGTACTATTTGTCTCCGAAGCTAAGCTTCGGCTATATAATTAGCATCGGTATTAGGAAATGTGTATATTAAAAAATGATTTGGAGAATCGCAAAAGACGATAAACGGGTTAGGGCGTTTAGGTATAAAAAAAGAAGGTTTTACTCTTTATCGGAGTATTTATTGGCCCCTTTGGCTACACATTTACGACTCGCTCGTATTTTACCAGAGAAGTGTTGGTCCGTAGTTCCAGCTTATACCGACGAGGCGTATAGTTTTCTGTTTATGTTAAAAGAAGAAACGCGAACGCCGTTTCAAATATTGAAAGATGAGTGGAACGTGGAGTTTAAAGAGGCCGAGGTGGCACTCTCCAGGCTACGACTTAGCACCGAAGACACCGGTGAAGAGACCGGCGGTGAGGAGAGCCCTGTTCAACAATCAAGCCCAGTTCAGTCGAGTAGCTGCGAGACGTAGATGGTCGAAGTTTCCTGTTCGAGGTAATAAACCGTATAGGTATCGTAAGTTAAAAGCTAGTGATTATCAGATCTACAAGGATAAGATTGGTGGAGATAATGGGTGGACGGTGACATTTAGTGGGGACTGCACTATGTTGAATAATTACGTAAGAGGAATTGGTAGGGACCAGCGTGACTCGGTGATGACTAAGACCGCACATATGCATTTTAATGGGGTATTGATGGCCAATGATGCTTTCTGGGAAGCGCCTAATTATATGACGATGTATAGTTGGATTATTCTTGATAATGATCCTGGTGGTACATTTCCAAAGCCCTCTGACATATTTGATATGGAGTATAAAGAGTTTCCGTCCATGTATGAGGTCGCCGAGAGTGTTAAATCTCGGTTTATTGTTAAGAGAAAGACGGAGCATTATTTACGGTCTACCGGTGTTGCTTTTGGGGAGAAACAAAATTATAAGGCGCCTAATGTTGGTCCGGTTAAAAAGCCTATACGTATGAAGTTTCGTAATATATGGCAGCCTTCCGAGTGGAAGGATACGGCTGGAGGAAAATACGAGGATTTGAAGAAAGGGGCTTTGTTATACGTATGTATTTGTGATAACAAGGCTACTCAATTTTCGTTTAATTTGAAGGGACAGTGGACCATGTATTTCATAAATAGAGATTTAATGTATTAATAAAACTCTTCTTTCATTGCAACACGATACTCTTGATTTATTACAGACTCGACAAACTTAAAATCCTTAAATAAAACATGACTAATACCATTTATTACAAGGTTAAGGGATATAATCCCTAGATTATTAAGGTAGAAGAGTAATCTCTTCAAAAAAATCGTCGTAAATCGATGTCCAGTCAAACTCCGGTGACGACCCAATACCGTGAATTCGATCCAAGCCATGTGTAATCCCAGTTGTTTCCGTAGGTTGTAGTTGAATCGGAGTTGTAATCTGATGTTGAAGAACCCGTTCTCCTGGTGGTCCCATGATATTAGTTTGAGATGAAACGGGTTTGGTACTTGATGTATGTATGTTCCAATCGTTGATTGACGATGAGTTATGGGTTCCCCTGTGCGTAAATCCCTCACCACACTCATGATGTATTGTGAATTTGCACTTACACGGTAGGAGTACTGTCTTCGACTTCTTGATCACTCGTGATATTGAAGAGAGGTTCCTCGATTGTTGTGAAGACTGAATTTTGTAAACTCCAGGACTTAAGGGCTTCATTCTCTGGTTTGTCGAGGAAGTTTTGATATGAGGCTCCGTCTCCTGGGTTGCATAAAATGATCGAAGGGATTCCCCCTTTTATAATACGTGGCTTCCCGTATTTGAGGTTTGTCTGCCACTCCTTTTGCGCACCAATTAAATGCTTCCAGTGCTTCATCTTTAGATAATGGGGGTCCACGTCATCAATCACGTTGTAAGAAACGTCGTCGTTGTATACTTTAGTGGAGAAGTCGAGATGACCGGTTATGTAATTATGAGATCCAAGGGATCTTGCCCACAGGGTTTTACCTGTTCTTGAAGGACCTTCGATGATTATTGATTTAGGTCTGTCGATAGATGGAATTACCTTATATTTACTCGGCCCCGCAGGGGAATTGGACTCCTCCAGAAAAAAATTAGACTCTAACCAATCCAAAATATCATCTGTTAAGACGAATTGGGTATGGTTGTATTTGGGGACGTATCCTACAGGAGGAGGATTGAATATGGCCGCTAAGTTTGGTTTCAGGTTATGGAATTGAAAGATGTAATCTTTAGGGAGTTTCTCCCTAATGACAGCCAAAGCGGCTTCAGCGGTACCTGAGTTTAACGCCTCTGCACATGCATCATTAGCCGTCTGTTGACCTCCTCGTGCAGATCGTGCATCGATCTGAAATTCACCCCAGTCGATGTAATCTCCGTCCTTCTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATATTTGGGTGGCAGATGCGACCGGAACCTCCATCTCGTAAATCGAAATGACGGGGGTTATAGAGCTGGATTTTTCCTTCGAATTGGATAAGCACATGGAGATGAGGTTCCCCATTATCGTGCCTTTCTCTACAAATTCGTATGAATTTCTTGGTTGAAGGACACTGTATAGTTTGTAGTTGCAGAAGAGCGTCTTCTTTAGTTAGATGGCAGTGAGGGTATGTTAGGAAAATGTTTTTAGCATGAATGCGATATTGCCTCGGAGTCCTTGGCATTTTCGGTATTTGTAGAAATGAATTGGGGTTACGCTCAAACTCTATTGTATCGGGGTTACTGGGGTTGTATATATAGTATGGATTGTAGAAGGCCTCTTGCTCACATTTGGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_003778174.1
Location 237-614
Protein Name V2
Coding Region ATGATTTGGAGAATCGCAAAAGACGATAAACGGGTTAGGGCGTTTAGGTATAAAAAAAGAAGGTTTTACTCTTTATCGGAGTATTTATTGGCCCCTTTGGCTACACATTTACGACTCGCTCGTATTTTACCAGAGAAGTGTTGGTCCGTAGTTCCAGCTTATACCGACGAGGCGTATAGTTTTCTGTTTATGTTAAAAGAAGAAACGCGAACGCCGTTTCAAATATTGAAAGATGAGTGGAACGTGGAGTTTAAAGAGGCCGAGGTGGCACTCTCCAGGCTACGACTTAGCACCGAAGACACCGGTGAAGAGACCGGCGGTGAGGAGAGCCCTGTTCAACAATCAAGCCCAGTTCAGTCGAGTAGCTGCGAGACGTAG
Protein Sequence MIWRIAKDDKRVRAFRYKKRRFYSLSEYLLAPLATHLRLARILPEKCWSVVPAYTDEAYSFLFMLKEETRTPFQILKDEWNVEFKEAEVALSRLRLSTEDTGEETGGEESPVQQSSPVQSSSCET

NCBI Accession YP_003778175.1
Location 469-1299
Protein Name coat protein
Coding Region ATGAGTGGAACGTGGAGTTTAAAGAGGCCGAGGTGGCACTCTCCAGGCTACGACTTAGCACCGAAGACACCGGTGAAGAGACCGGCGGTGAGGAGAGCCCTGTTCAACAATCAAGCCCAGTTCAGTCGAGTAGCTGCGAGACGTAGATGGTCGAAGTTTCCTGTTCGAGGTAATAAACCGTATAGGTATCGTAAGTTAAAAGCTAGTGATTATCAGATCTACAAGGATAAGATTGGTGGAGATAATGGGTGGACGGTGACATTTAGTGGGGACTGCACTATGTTGAATAATTACGTAAGAGGAATTGGTAGGGACCAGCGTGACTCGGTGATGACTAAGACCGCACATATGCATTTTAATGGGGTATTGATGGCCAATGATGCTTTCTGGGAAGCGCCTAATTATATGACGATGTATAGTTGGATTATTCTTGATAATGATCCTGGTGGTACATTTCCAAAGCCCTCTGACATATTTGATATGGAGTATAAAGAGTTTCCGTCCATGTATGAGGTCGCCGAGAGTGTTAAATCTCGGTTTATTGTTAAGAGAAAGACGGAGCATTATTTACGGTCTACCGGTGTTGCTTTTGGGGAGAAACAAAATTATAAGGCGCCTAATGTTGGTCCGGTTAAAAAGCCTATACGTATGAAGTTTCGTAATATATGGCAGCCTTCCGAGTGGAAGGATACGGCTGGAGGAAAATACGAGGATTTGAAGAAAGGGGCTTTGTTATACGTATGTATTTGTGATAACAAGGCTACTCAATTTTCGTTTAATTTGAAGGGACAGTGGACCATGTATTTCATAAATAGAGATTTAATGTATTAA
Protein Sequence MSGTWSLKRPRWHSPGYDLAPKTPVKRPAVRRALFNNQAQFSRVAARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGRDQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEYKEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNIWQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY

NCBI Accession YP_003778176.1
Location 1296-1718
Protein Name C3
Coding Region ATGAGTGTGGTGAGGGATTTACGCACAGGGGAACCCATAACTCATCGTCAATCAACGATTGGAACATACATACATCAAGTACCAAACCCGTTTCATCTCAAACTAATATCATGGGACCACCAGGAGAACGGGTTCTTCAACATCAGATTACAACTCCGATTCAACTACAACCTACGGAAACAACTGGGATTACACATGGCTTGGATCGAATTCACGGTATTGGGTCGTCACCGGAGTTTGACTGGACATCGATTTACGACGATTTTTTTGAAGAGATTACTCTTCTACCTTAATAATCTAGGGATTATATCCCTTAACCTTGTAATAAATGGTATTAGTCATGTTTTATTTAAGGATTTTAAGTTTGTCGAGTCTGTAATAAATCAAGAGTATCGTGTTGCAATGAAAGAAGAGTTTTATTAA
Protein Sequence MSVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWDHQENGFFNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRSLTGHRFTTIFLKRLLFYLNNLGIISLNLVINGISHVLFKDFKFVESVINQEYRVAMKEEFY

NCBI Accession YP_003778177.1
Location 1426-1851
Protein Name C2
Coding Region ATGAAGCCCTTAAGTCCTGGAGTTTACAAAATTCAGTCTTCACAACAATCGAGGAACCTCTCTTCAATATCACGAGTGATCAAGAAGTCGAAGACAGTACTCCTACCGTGTAAGTGCAAATTCACAATACATCATGAGTGTGGTGAGGGATTTACGCACAGGGGAACCCATAACTCATCGTCAATCAACGATTGGAACATACATACATCAAGTACCAAACCCGTTTCATCTCAAACTAATATCATGGGACCACCAGGAGAACGGGTTCTTCAACATCAGATTACAACTCCGATTCAACTACAACCTACGGAAACAACTGGGATTACACATGGCTTGGATCGAATTCACGGTATTGGGTCGTCACCGGAGTTTGACTGGACATCGATTTACGACGATTTTTTTGAAGAGATTACTCTTCTACCTTAA
Protein Sequence MKPLSPGVYKIQSSQQSRNLSSISRVIKKSKTVLLPCKCKFTIHHECGEGFTHRGTHNSSSINDWNIHTSSTKPVSSQTNIMGPPGERVLQHQITTPIQLQPTETTGITHGLDRIHGIGSSPEFDWTSIYDDFFEEITLLP

NCBI Accession YP_003778178.1
Location 1739-2854
Protein Name Rep
Coding Region ATGCCAAGGACTCCGAGGCAATATCGCATTCATGCTAAAAACATTTTCCTAACATACCCTCACTGCCATCTAACTAAAGAAGACGCTCTTCTGCAACTACAAACTATACAGTGTCCTTCAACCAAGAAATTCATACGAATTTGTAGAGAAAGGCACGATAATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAAGGAAAAATCCAGCTCTATAACCCCCGTCATTTCGATTTACGAGATGGAGGTTCCGGTCGCATCTGCCACCCAAATATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGACGGAGATTACATCGACTGGGGTGAATTTCAGATCGATGCACGATCTGCACGAGGAGGTCAACAGACGGCTAATGATGCATGTGCAGAGGCGTTAAACTCAGGTACCGCTGAAGCCGCTTTGGCTGTCATTAGGGAGAAACTCCCTAAAGATTACATCTTTCAATTCCATAACCTGAAACCAAACTTAGCGGCCATATTCAATCCTCCTCCTGTAGGATACGTCCCCAAATACAACCATACCCAATTCGTCTTAACAGATGATATTTTGGATTGGTTAGAGTCTAATTTTTTTCTGGAGGAGTCCAATTCCCCTGCGGGGCCGAGTAAATATAAGGTAATTCCATCTATCGACAGACCTAAATCAATAATCATCGAAGGTCCTTCAAGAACAGGTAAAACCCTGTGGGCAAGATCCCTTGGATCTCATAATTACATAACCGGTCATCTCGACTTCTCCACTAAAGTATACAACGACGACGTTTCTTACAACGTGATTGATGACGTGGACCCCCATTATCTAAAGATGAAGCACTGGAAGCATTTAATTGGTGCGCAAAAGGAGTGGCAGACAAACCTCAAATACGGGAAGCCACGTATTATAAAAGGGGGAATCCCTTCGATCATTTTATGCAACCCAGGAGACGGAGCCTCATATCAAAACTTCCTCGACAAACCAGAGAATGAAGCCCTTAAGTCCTGGAGTTTACAAAATTCAGTCTTCACAACAATCGAGGAACCTCTCTTCAATATCACGAGTGATCAAGAAGTCGAAGACAGTACTCCTACCGTGTAA
Protein Sequence MPRTPRQYRIHAKNIFLTYPHCHLTKEDALLQLQTIQCPSTKKFIRICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSYIEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQFHNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIPSIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKSWSLQNSVFTTIEEPLFNITSDQEVEDSTPTV

NCBI Accession YP_003778179.1
Location 2437-2694
Protein Name C4
Coding Region ATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAAGGAAAAATCCAGCTCTATAACCCCCGTCATTTCGATTTACGAGATGGAGGTTCCGGTCGCATCTGCCACCCAAATATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGACGGAGATTACATCGACTGGGGTGAATTTCAGATCGATGCACGATCTGCACGAGGAGGTCAACAGACGGCTAATGATGCATGTGCAGAGGCGTTAA
Protein Sequence MGNLISMCLSNSKEKSSSITPVISIYEMEVPVASATQIFRELNRAPTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR

References More References in PubMed

1

Turnip curly top virus, a highly divergent geminivirus infecting turnip in Iran.

Briddon RW, et al.  Virus Res. 2010 Sep;152(1-2):169-75. doi: 10.1016/j.virusres.2010.05.016. Epub 2010 Jun 8.

PMID: 20566344

2

Genetic diversity and host range studies of turnip curly top virus.

Razavinejad S, et al.  Virus Genes. 2013 Apr;46(2):345-53. doi: 10.1007/s11262-012-0858-y. Epub 2012 Dec 9.

PMID: 23225113

3

Genome Sequences of Beet curly top Iran virus, Oat dwarf virus, Turnip curly top virus, and Wheat dwarf virus Identified in Leafhoppers.

Kamali M, et al.  Genome Announc. 2017 Feb 23;5(8):e01674-16. doi: 10.1128/genomeA.01674-16.

PMID: 28232449

4

Next-Generation Sequencing and Genome Editing in Plant Virology.

Hadidi A, et al.  Front Microbiol. 2016 Aug 26;7:1325. doi: 10.3389/fmicb.2016.01325. eCollection 2016.

PMID: 27617007

5

Molecular diversity of turncurtoviruses in Iran.

Kamali M, et al.  Arch Virol. 2016 Mar;161(3):551-61. doi: 10.1007/s00705-015-2686-6. Epub 2015 Nov 26.

PMID: 26611911

6

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus.

Varsani A, et al.  Arch Virol. 2014 Aug;159(8):2193-203. doi: 10.1007/s00705-014-2050-2. Epub 2014 Mar 22.

PMID: 24658781

7

Identification of a new turncurtovirus in the leafhopper Circulifer haematoceps and the host plant species Sesamum indicum.

Hasanvand V, et al.  Virus Genes. 2018 Dec;54(6):840-845. doi: 10.1007/s11262-018-1604-x. Epub 2018 Oct 11.

PMID: 30311179

8

Distribution and Incidence of Some Aphid and Leafhopper Transmitted Viruses Infecting Sugar Beets in Iran.

Farzadfar S, et al.  Plant Dis. 2006 Mar;90(3):252-258. doi: 10.1094/PD-90-0252.

PMID: 30786545