Genus | Topocuvirus |
---|---|
NCBI Assembly | GCF_000848785.1 |
Release date | 2015/2/12 |
Submitter | Briddon,R.W., Bedford,I.D., Tsai,J.H., Markham,P.G. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_620731.1 |
---|---|
Location | 193-483 |
Gene Name | ORF V2 |
Protein Name | hypothetical protein |
Coding Region | ATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGA |
Protein Sequence | MATTNCRICGSSFACPINERFSVCESRGATLSDFLLYFRRKYIETSPGLISYLNALQAEINELFSAIKEVSRSEIRHGSCEDKCQPSSIQKGKAEA |
NCBI Accession | NP_620732.1 |
---|---|
Location | 353-1081 |
Gene Name | orf1 |
Protein Name | coat protein |
Coding Region | ATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAA |
Protein Sequence | MPYKRKLTSYFPQSKRFRGAKSGMAVVKTSASRRLYKKGKRKPDRIKTYTYAFSSICTDKGTIVYMNSWSLGLGPQQRSSDIEILKSMYIRLTVALSENAASQVKTYVVKWALIVDQVPGETLVGVADVYKTCPSPYPYVQCAYIADDNHSRFQVLRSGFLSLSGNGLAVGSSTRTGCPAMKNMASINKFCKNLNVRCVYDADSATGDIASIKRGAVYLVIWPDVEIRYGFSCTMYHRNGNA |
NCBI Accession | NP_620733.1 |
---|---|
Location | 1090-1494 |
Gene Name | ORF C3 |
Protein Name | replication-enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAGATTTAAATTTCATGTAATGAAACATTTGAATAATTTAGGTGTTATTAGTATAAATAATGTAATTAGATCGATAAATCACTTCATTGATTTATTTGATCAGCGTGTATTTTATGCTCCAAGTTTTTATTATAATATAAAGATGAGATTGTATTAA |
Protein Sequence | MDSRTGELLTYTQCQTGCYFDDIKNPIYFRLQNTTTMATGNKIITLQIRANHNLRKVLGLQICWLNLVVLSVSPRLSGEALLDRFKFHVMKHLNNLGVISINNVIRSINHFIDLFDQRVFYAPSFYYNIKMRLY |
NCBI Accession | NP_620734.1 |
---|---|
Location | 1244-1723 |
Gene Name | ORF C2 |
Protein Name | putative transcription activation protein |
Coding Region | ATGGTACTGTGTGACAAAGGCGCGCACGAATTAGGAAATAGGGAGATAAGGAAGGGTTTCTGCGAAAGGTGCTTATACCCAGAATACTTTGACGACGAAGAAGCTGCAACAACAACTCCAACTATCAAAAAACGACCCCCCAAACTGACTTGGGCACCGAAGAAAAAGAGACGAAAGGCCATTCACCTCTCCTGCGGCTGCTCATACTACGGAGGCATAGACTGTGAGGATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAG |
Protein Sequence | MVLCDKGAHELGNREIRKGFCERCLYPEYFDDEEAATTTPTIKKRPPKLTWAPKKKRRKAIHLSCGCSYYGGIDCEDGFTHRGITHVHTVPDWLLLRRHQEPNLLPPPEHNNNGDGEQNNNITNQSQPQPAESVGSPDLLAELGGTFSITSSEWRSIIR |
NCBI Accession | NP_620735.1 |
---|---|
Location | 1710-2759 |
Gene Name | ORF C1 |
Protein Name | replication-associated protein |
Coding Region | ATGCCATCCAATCCCAAACGTTTTCAAATAGCAGCCAAGAACTATTTCCTCACATATCCCAATTGTTCTTTATCCAAAGAAGAAGCTCTCGACCAACTTCAAAGGCTACAAACACCAACAAATAAAAAATACATAAAAGTAGCTAGAGAGCTACACGAAAATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAAACCGTTCCTCAAAAGAGGAAGCTCTACAAATTATAAAAGAAAAATTGCCTAAAGATTTTTTATTTTGTTATCATAATTTAGTTTCTAACTTAGATAGGATTTTTACTCCGGCACCAACTCCGTTTGTCCCTCCGTTTCAATTATCTTCATTTACTAACGTTCCTGAAGATATGCAAGAATGGGCGGATGATTATTTTGGAGTTAGTGCCGCTGCGCGGCCTATGAGATATAAAAGTATTATAATTGAGGGTGAGTCTAGGACCGGCAAGACAATGTGGGCTAGGAGCTTGGGCCCACATAATTATTTATCCGGCCACTTAGATTTTAACAGCAGAGTGTATTCAAATAGTGCCTTGTATAACGTCATTGATGACGTCACACCGCACTATTTAAAGTTAAAGCACTGGAAAGAGCTGATTGGGGCCCAGAGAGACTGGCAGTCAAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGTGGCATCCCATCAATAGTCCTTTGCAACCCTGGTGGGGACACCTCTTTCCAAGACTTCCTCGATAAGGAAGAGAATGAGGCTTTAAAAGATTGGACACTCTATAATGCTGTATTCATAAAACTGACTGAACCCTTATACGATGGTACTGTGTGA |
Protein Sequence | MPSNPKRFQIAAKNYFLTYPNCSLSKEEALDQLQRLQTPTNKKYIKVARELHENGEPHLHVLIQFEGKFNCKNQRFFDLVSPTRSTHFHPNIQGAKSSSDVNSYVDKDGDTIEWGEFQIDARSARGGQQTANDECAEALNRSSKEEALQIIKEKLPKDFLFCYHNLVSNLDRIFTPAPTPFVPPFQLSSFTNVPEDMQEWADDYFGVSAAARPMRYKSIIIEGESRTGKTMWARSLGPHNYLSGHLDFNSRVYSNSALYNVIDDVTPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGGDTSFQDFLDKEENEALKDWTLYNAVFIKLTEPLYDGTV |
NCBI Accession | NP_620736.1 |
---|---|
Location | 2342-2599 |
Gene Name | ORF C4 |
Protein Name | C4 protein |
Coding Region | ATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAA |
Protein Sequence | MGNLISMCLYNSKGNSTAKINDSSTWYPQPGQHISIRTYRELNPAPTSTPTSTRTETLSNGENSRLTLDLLEEASRQLTTNVQRP |
1 |
Briddon RW, et al. Virology. 1996 May 15;219(2):387-94. doi: 10.1006/viro.1996.0264. PMID: 8638404 |
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2 |
Sun K, et al. Plant Dis. 2021 Apr;105(4):1006-1012. doi: 10.1094/PDIS-03-20-0572-RE. Epub 2021 Mar 12. PMID: 33026306 |
3 |
A novel geminivirus identified in tomato and cleome plants sampled in Brazil. Fontenele RS, et al. Virus Res. 2017 Aug 15;240:175-179. doi: 10.1016/j.virusres.2017.08.007. Epub 2017 Aug 23. PMID: 28843502 |
4 |
Bahder BW, et al. Phytopathology. 2016 Oct;106(10):1223-1230. doi: 10.1094/PHYTO-03-16-0125-FI. Epub 2016 Jul 27. PMID: 27111804 |