Tomato pseudo-curly top virus

Basic Information

Genus Topocuvirus
NCBI Assembly GCF_000848785.1
Release date 2015/2/12
Submitter Briddon,R.W., Bedford,I.D., Tsai,J.H., Markham,P.G.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003825
ACCGGAGTGCCCTCCCTGGCCCTTTAAAATGTGGGTCCCACATGAGGGTATTGTTGTCTATTCACTCTATCAATTCCCGCTCAATTATTGGGCCTCTGTTCACTAAGGCCTTATAAGGCCCTTAATGAATTGGGCCCCAAGTTTGTCTTTATCTGCAGCTTTATATAAAGCTGCAGTTGCTTTCTTAAAGTAATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAATAGAGTGTTTAATACAATCTCATCTTTATATTATAATAAAAACTTGGAGCATAAAATACACGCTGATCAAATAAATCAATGAAGTGATTTATCGATCTAATTACATTATTTATACTAATAACACCTAAATTATTCAAATGTTTCATTACATGAAATTTAAATCTATCTAATAATGCTTCTCCACTCAGACGAGGTGATACTGAAAGTACCACCAAGTTCAGCCAACAAATCTGGAGACCCAACACTTTCCGCAGGTTGTGGTTGGCTCTGATTTGTAATGTTATTATTTTGTTCCCCGTCGCCATTGTTGTTGTGTTCTGGAGGCGGAAGTAAATTGGGTTCTTGATGTCGTCGAAGTAACAGCCAGTCTGGCACTGTGTGTACGTGAGTAATTCCCCTGTGCGTGAATCCATCCTCACAGTCTATGCCTCCGTAGTATGAGCAGCCGCAGGAGAGGTGAATGGCCTTTCGTCTCTTTTTCTTCGGTGCCCAAGTCAGTTTGGGGGGTCGTTTTTTGATAGTTGGAGTTGTTGTTGCAGCTTCTTCGTCGTCAAAGTATTCTGGGTATAAGCACCTTTCGCAGAAACCCTTCCTTATCTCCCTATTTCCTAATTCGTGCGCGCCTTTGTCACACAGTACCATCGTATAAGGGTTCAGTCAGTTTTATGAATACAGCATTATAGAGTGTCCAATCTTTTAAAGCCTCATTCTCTTCCTTATCGAGGAAGTCTTGGAAAGAGGTGTCCCCACCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGAACTGGCTTTCCATATTTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTTAACTTTAAATAGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACTATTTGAATACACTCTGCTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCACATTGTCTTGCCGGTCCTAGACTCACCCTCAATTATAATACTTTTATATCTCATAGGCCGCGCAGCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACGTTAGTAAATGAAGATAATTGAAACGGAGGGACAAACGGAGTTGGTGCCGGAGTAAAAATCCTATCTAAGTTAGAAACTAAATTATGATAACAAAATAAAAAATCTTTAGGCAATTTTTCTTTTATAATTTGTAGAGCTTCCTCTTTTGAGGAACGGTTTAGGGCCTCTGCACATTCGTCGTTAGCTGTCTGCTGGCCTCCTCTAGCAGATCTAGCGTCAATCTGGAATTCTCCCCATTCGATAGTGTCTCCGTCCTTGTCGACGTAGGAGTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTTTTGCAGTTGAATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTAGCTACTTTTATGTATTTTTTATTTGTTGGTGTTTGTAGCCTTTGAAGTTGGTCGAGAGCTTCTTCTTTGGATAAAGAACAATTGGGATATGTGAGGAAATAGTTCTTGGCTGCTATTTGAAAACGTTTGGGATTGGATGGCATATTTGTAAATATGTGTTGGTTACCAATTGGTTTGCTTTTTAATTCTCTAAATGAATCGGTAACTGGTACCCAATTTATAGGGGAGGGCACCGTATTAATATT

Gene Information

NCBI Accession NP_620731.1
Location 193-483
Gene Name ORF V2
Protein Name hypothetical protein
Coding Region ATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGA
Protein Sequence MATTNCRICGSSFACPINERFSVCESRGATLSDFLLYFRRKYIETSPGLISYLNALQAEINELFSAIKEVSRSEIRHGSCEDKCQPSSIQKGKAEA

NCBI Accession NP_620732.1
Location 353-1081
Gene Name orf1
Protein Name coat protein
Coding Region ATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAA
Protein Sequence MPYKRKLTSYFPQSKRFRGAKSGMAVVKTSASRRLYKKGKRKPDRIKTYTYAFSSICTDKGTIVYMNSWSLGLGPQQRSSDIEILKSMYIRLTVALSENAASQVKTYVVKWALIVDQVPGETLVGVADVYKTCPSPYPYVQCAYIADDNHSRFQVLRSGFLSLSGNGLAVGSSTRTGCPAMKNMASINKFCKNLNVRCVYDADSATGDIASIKRGAVYLVIWPDVEIRYGFSCTMYHRNGNA

NCBI Accession NP_620733.1
Location 1090-1494
Gene Name ORF C3
Protein Name replication-enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAGATTTAAATTTCATGTAATGAAACATTTGAATAATTTAGGTGTTATTAGTATAAATAATGTAATTAGATCGATAAATCACTTCATTGATTTATTTGATCAGCGTGTATTTTATGCTCCAAGTTTTTATTATAATATAAAGATGAGATTGTATTAA
Protein Sequence MDSRTGELLTYTQCQTGCYFDDIKNPIYFRLQNTTTMATGNKIITLQIRANHNLRKVLGLQICWLNLVVLSVSPRLSGEALLDRFKFHVMKHLNNLGVISINNVIRSINHFIDLFDQRVFYAPSFYYNIKMRLY

NCBI Accession NP_620734.1
Location 1244-1723
Gene Name ORF C2
Protein Name putative transcription activation protein
Coding Region ATGGTACTGTGTGACAAAGGCGCGCACGAATTAGGAAATAGGGAGATAAGGAAGGGTTTCTGCGAAAGGTGCTTATACCCAGAATACTTTGACGACGAAGAAGCTGCAACAACAACTCCAACTATCAAAAAACGACCCCCCAAACTGACTTGGGCACCGAAGAAAAAGAGACGAAAGGCCATTCACCTCTCCTGCGGCTGCTCATACTACGGAGGCATAGACTGTGAGGATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAG
Protein Sequence MVLCDKGAHELGNREIRKGFCERCLYPEYFDDEEAATTTPTIKKRPPKLTWAPKKKRRKAIHLSCGCSYYGGIDCEDGFTHRGITHVHTVPDWLLLRRHQEPNLLPPPEHNNNGDGEQNNNITNQSQPQPAESVGSPDLLAELGGTFSITSSEWRSIIR

NCBI Accession NP_620735.1
Location 1710-2759
Gene Name ORF C1
Protein Name replication-associated protein
Coding Region ATGCCATCCAATCCCAAACGTTTTCAAATAGCAGCCAAGAACTATTTCCTCACATATCCCAATTGTTCTTTATCCAAAGAAGAAGCTCTCGACCAACTTCAAAGGCTACAAACACCAACAAATAAAAAATACATAAAAGTAGCTAGAGAGCTACACGAAAATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAAACCGTTCCTCAAAAGAGGAAGCTCTACAAATTATAAAAGAAAAATTGCCTAAAGATTTTTTATTTTGTTATCATAATTTAGTTTCTAACTTAGATAGGATTTTTACTCCGGCACCAACTCCGTTTGTCCCTCCGTTTCAATTATCTTCATTTACTAACGTTCCTGAAGATATGCAAGAATGGGCGGATGATTATTTTGGAGTTAGTGCCGCTGCGCGGCCTATGAGATATAAAAGTATTATAATTGAGGGTGAGTCTAGGACCGGCAAGACAATGTGGGCTAGGAGCTTGGGCCCACATAATTATTTATCCGGCCACTTAGATTTTAACAGCAGAGTGTATTCAAATAGTGCCTTGTATAACGTCATTGATGACGTCACACCGCACTATTTAAAGTTAAAGCACTGGAAAGAGCTGATTGGGGCCCAGAGAGACTGGCAGTCAAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGTGGCATCCCATCAATAGTCCTTTGCAACCCTGGTGGGGACACCTCTTTCCAAGACTTCCTCGATAAGGAAGAGAATGAGGCTTTAAAAGATTGGACACTCTATAATGCTGTATTCATAAAACTGACTGAACCCTTATACGATGGTACTGTGTGA
Protein Sequence MPSNPKRFQIAAKNYFLTYPNCSLSKEEALDQLQRLQTPTNKKYIKVARELHENGEPHLHVLIQFEGKFNCKNQRFFDLVSPTRSTHFHPNIQGAKSSSDVNSYVDKDGDTIEWGEFQIDARSARGGQQTANDECAEALNRSSKEEALQIIKEKLPKDFLFCYHNLVSNLDRIFTPAPTPFVPPFQLSSFTNVPEDMQEWADDYFGVSAAARPMRYKSIIIEGESRTGKTMWARSLGPHNYLSGHLDFNSRVYSNSALYNVIDDVTPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGGDTSFQDFLDKEENEALKDWTLYNAVFIKLTEPLYDGTV

NCBI Accession NP_620736.1
Location 2342-2599
Gene Name ORF C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAA
Protein Sequence MGNLISMCLYNSKGNSTAKINDSSTWYPQPGQHISIRTYRELNPAPTSTPTSTRTETLSNGENSRLTLDLLEEASRQLTTNVQRP

References More References in PubMed

1

Nightshade Curly Top Virus: A Possible New Virus of the Genus Topocuvirus Infecting Solanum nigrum in China.

Sun K, et al.  Plant Dis. 2021 Apr;105(4):1006-1012. doi: 10.1094/PDIS-03-20-0572-RE. Epub 2021 Mar 12.

PMID: 33026306
2

Analysis of the nucleotide sequence of the treehopper-transmitted geminivirus, tomato pseudo-curly top virus, suggests a recombinant origin.

Briddon RW, et al.  Virology. 1996 May 15;219(2):387-94. doi: 10.1006/viro.1996.0264.

PMID: 8638404
3

A novel geminivirus identified in tomato and cleome plants sampled in Brazil.

Fontenele RS, et al.  Virus Res. 2017 Aug 15;240:175-179. doi: 10.1016/j.virusres.2017.08.007. Epub 2017 Aug 23.

PMID: 28843502
4

Phylogeny of Geminivirus Coat Protein Sequences and Digital PCR Aid in Identifying Spissistilus festinus as a Vector of Grapevine red blotch-associated virus.

Bahder BW, et al.  Phytopathology. 2016 Oct;106(10):1223-1230. doi: 10.1094/PHYTO-03-16-0125-FI. Epub 2016 Jul 27.

PMID: 27111804