Tomato pseudo-curly top virus
Basic Information
| Genus |
Topocuvirus
|
| NCBI Assembly |
GCF_000848785.1 |
| Release date |
2015/2/12 |
| Submitter |
Briddon,R.W., Bedford,I.D., Tsai,J.H., Markham,P.G. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGAGTGCCCTCCCTGGCCCTTTAAAATGTGGGTCCCACATGAGGGTATTGTTGTCTATTCACTCTATCAATTCCCGCTCAATTATTGGGCCTCTGTTCACTAAGGCCTTATAAGGCCCTTAATGAATTGGGCCCCAAGTTTGTCTTTATCTGCAGCTTTATATAAAGCTGCAGTTGCTTTCTTAAAGTAATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAATAGAGTGTTTAATACAATCTCATCTTTATATTATAATAAAAACTTGGAGCATAAAATACACGCTGATCAAATAAATCAATGAAGTGATTTATCGATCTAATTACATTATTTATACTAATAACACCTAAATTATTCAAATGTTTCATTACATGAAATTTAAATCTATCTAATAATGCTTCTCCACTCAGACGAGGTGATACTGAAAGTACCACCAAGTTCAGCCAACAAATCTGGAGACCCAACACTTTCCGCAGGTTGTGGTTGGCTCTGATTTGTAATGTTATTATTTTGTTCCCCGTCGCCATTGTTGTTGTGTTCTGGAGGCGGAAGTAAATTGGGTTCTTGATGTCGTCGAAGTAACAGCCAGTCTGGCACTGTGTGTACGTGAGTAATTCCCCTGTGCGTGAATCCATCCTCACAGTCTATGCCTCCGTAGTATGAGCAGCCGCAGGAGAGGTGAATGGCCTTTCGTCTCTTTTTCTTCGGTGCCCAAGTCAGTTTGGGGGGTCGTTTTTTGATAGTTGGAGTTGTTGTTGCAGCTTCTTCGTCGTCAAAGTATTCTGGGTATAAGCACCTTTCGCAGAAACCCTTCCTTATCTCCCTATTTCCTAATTCGTGCGCGCCTTTGTCACACAGTACCATCGTATAAGGGTTCAGTCAGTTTTATGAATACAGCATTATAGAGTGTCCAATCTTTTAAAGCCTCATTCTCTTCCTTATCGAGGAAGTCTTGGAAAGAGGTGTCCCCACCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGAACTGGCTTTCCATATTTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTTAACTTTAAATAGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACTATTTGAATACACTCTGCTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCACATTGTCTTGCCGGTCCTAGACTCACCCTCAATTATAATACTTTTATATCTCATAGGCCGCGCAGCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACGTTAGTAAATGAAGATAATTGAAACGGAGGGACAAACGGAGTTGGTGCCGGAGTAAAAATCCTATCTAAGTTAGAAACTAAATTATGATAACAAAATAAAAAATCTTTAGGCAATTTTTCTTTTATAATTTGTAGAGCTTCCTCTTTTGAGGAACGGTTTAGGGCCTCTGCACATTCGTCGTTAGCTGTCTGCTGGCCTCCTCTAGCAGATCTAGCGTCAATCTGGAATTCTCCCCATTCGATAGTGTCTCCGTCCTTGTCGACGTAGGAGTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTTTTGCAGTTGAATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTAGCTACTTTTATGTATTTTTTATTTGTTGGTGTTTGTAGCCTTTGAAGTTGGTCGAGAGCTTCTTCTTTGGATAAAGAACAATTGGGATATGTGAGGAAATAGTTCTTGGCTGCTATTTGAAAACGTTTGGGATTGGATGGCATATTTGTAAATATGTGTTGGTTACCAATTGGTTTGCTTTTTAATTCTCTAAATGAATCGGTAACTGGTACCCAATTTATAGGGGAGGGCACCGTATTAATATT
Gene Information
|
NCBI Accession
|
NP_620731.1
|
|
Location
|
193-483 |
|
Gene Name
|
ORF V2 |
|
Protein Name
|
hypothetical protein |
|
Coding Region
|
ATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGA |
|
Protein Sequence
|
MATTNCRICGSSFACPINERFSVCESRGATLSDFLLYFRRKYIETSPGLISYLNALQAEINELFSAIKEVSRSEIRHGSCEDKCQPSSIQKGKAEA |
|
NCBI Accession
|
NP_620732.1
|
|
Location
|
353-1081 |
|
Gene Name
|
orf1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAA |
|
Protein Sequence
|
MPYKRKLTSYFPQSKRFRGAKSGMAVVKTSASRRLYKKGKRKPDRIKTYTYAFSSICTDKGTIVYMNSWSLGLGPQQRSSDIEILKSMYIRLTVALSENAASQVKTYVVKWALIVDQVPGETLVGVADVYKTCPSPYPYVQCAYIADDNHSRFQVLRSGFLSLSGNGLAVGSSTRTGCPAMKNMASINKFCKNLNVRCVYDADSATGDIASIKRGAVYLVIWPDVEIRYGFSCTMYHRNGNA |
|
NCBI Accession
|
NP_620733.1
|
|
Location
|
1090-1494 |
|
Gene Name
|
ORF C3 |
|
Protein Name
|
replication-enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAGATTTAAATTTCATGTAATGAAACATTTGAATAATTTAGGTGTTATTAGTATAAATAATGTAATTAGATCGATAAATCACTTCATTGATTTATTTGATCAGCGTGTATTTTATGCTCCAAGTTTTTATTATAATATAAAGATGAGATTGTATTAA |
|
Protein Sequence
|
MDSRTGELLTYTQCQTGCYFDDIKNPIYFRLQNTTTMATGNKIITLQIRANHNLRKVLGLQICWLNLVVLSVSPRLSGEALLDRFKFHVMKHLNNLGVISINNVIRSINHFIDLFDQRVFYAPSFYYNIKMRLY |
|
NCBI Accession
|
NP_620734.1
|
|
Location
|
1244-1723 |
|
Gene Name
|
ORF C2 |
|
Protein Name
|
putative transcription activation protein |
|
Coding Region
|
ATGGTACTGTGTGACAAAGGCGCGCACGAATTAGGAAATAGGGAGATAAGGAAGGGTTTCTGCGAAAGGTGCTTATACCCAGAATACTTTGACGACGAAGAAGCTGCAACAACAACTCCAACTATCAAAAAACGACCCCCCAAACTGACTTGGGCACCGAAGAAAAAGAGACGAAAGGCCATTCACCTCTCCTGCGGCTGCTCATACTACGGAGGCATAGACTGTGAGGATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAG |
|
Protein Sequence
|
MVLCDKGAHELGNREIRKGFCERCLYPEYFDDEEAATTTPTIKKRPPKLTWAPKKKRRKAIHLSCGCSYYGGIDCEDGFTHRGITHVHTVPDWLLLRRHQEPNLLPPPEHNNNGDGEQNNNITNQSQPQPAESVGSPDLLAELGGTFSITSSEWRSIIR |
|
NCBI Accession
|
NP_620735.1
|
|
Location
|
1710-2759 |
|
Gene Name
|
ORF C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCATCCAATCCCAAACGTTTTCAAATAGCAGCCAAGAACTATTTCCTCACATATCCCAATTGTTCTTTATCCAAAGAAGAAGCTCTCGACCAACTTCAAAGGCTACAAACACCAACAAATAAAAAATACATAAAAGTAGCTAGAGAGCTACACGAAAATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAAACCGTTCCTCAAAAGAGGAAGCTCTACAAATTATAAAAGAAAAATTGCCTAAAGATTTTTTATTTTGTTATCATAATTTAGTTTCTAACTTAGATAGGATTTTTACTCCGGCACCAACTCCGTTTGTCCCTCCGTTTCAATTATCTTCATTTACTAACGTTCCTGAAGATATGCAAGAATGGGCGGATGATTATTTTGGAGTTAGTGCCGCTGCGCGGCCTATGAGATATAAAAGTATTATAATTGAGGGTGAGTCTAGGACCGGCAAGACAATGTGGGCTAGGAGCTTGGGCCCACATAATTATTTATCCGGCCACTTAGATTTTAACAGCAGAGTGTATTCAAATAGTGCCTTGTATAACGTCATTGATGACGTCACACCGCACTATTTAAAGTTAAAGCACTGGAAAGAGCTGATTGGGGCCCAGAGAGACTGGCAGTCAAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGTGGCATCCCATCAATAGTCCTTTGCAACCCTGGTGGGGACACCTCTTTCCAAGACTTCCTCGATAAGGAAGAGAATGAGGCTTTAAAAGATTGGACACTCTATAATGCTGTATTCATAAAACTGACTGAACCCTTATACGATGGTACTGTGTGA |
|
Protein Sequence
|
MPSNPKRFQIAAKNYFLTYPNCSLSKEEALDQLQRLQTPTNKKYIKVARELHENGEPHLHVLIQFEGKFNCKNQRFFDLVSPTRSTHFHPNIQGAKSSSDVNSYVDKDGDTIEWGEFQIDARSARGGQQTANDECAEALNRSSKEEALQIIKEKLPKDFLFCYHNLVSNLDRIFTPAPTPFVPPFQLSSFTNVPEDMQEWADDYFGVSAAARPMRYKSIIIEGESRTGKTMWARSLGPHNYLSGHLDFNSRVYSNSALYNVIDDVTPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGGDTSFQDFLDKEENEALKDWTLYNAVFIKLTEPLYDGTV |
|
NCBI Accession
|
NP_620736.1
|
|
Location
|
2342-2599 |
|
Gene Name
|
ORF C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAA |
|
Protein Sequence
|
MGNLISMCLYNSKGNSTAKINDSSTWYPQPGQHISIRTYRELNPAPTSTPTSTRTETLSNGENSRLTLDLLEEASRQLTTNVQRP |