Tomato geminivirus 1

Basic Information

Genus Topilevirus
Isolate Brazil
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

MF072688
ACGGATGTGGCCCCAGTTGCGAGCGCTTTAGCGCGAGCCTTTAATAAAGTGATAAAGTGAAACGCTACTTTTGACGTGGCACAATGTGAGCCGTAAAACGTGCAGAAAAAAAATAAAAAAAGCCGACAAGCAAATAACGTGGGCCCCACTAAATAAAGACATCGGAAAAAGGTAACATACTATATTATTCTTGCCTTCGTCCCTAAGTTTTGACTGGTCAAAACTTGCGGCGTACTCTATACGCTTCTTATTTGGTATATAAAGTGGTGTATTTTATACGCATTATGGAGTGGTCTTTTAACGCAGTGGTGTACATTATTGTGTACATTTGTACGCTATTCGTTACGCTCGTTAATGGATATTCCGTTATACGAAGTGAACGACTATCCCGGCGTCTACAATCAATTTCTACAGACTTGCGCCAATCGTCTAATTTCTTGGCAATTATCGAAGGTTCAATTGGAGCTCGACGTGAAAGGAATTTCAATCGACCGGAAGGAGCAGCTTCTGAAACTCCAGTAGTTCCTCGAGGAGTTCAAGAAGTTTAATCGGGTTATATCTTATCAACGCAATCATCTAGTGAAGTGTTGTTTGTATTCTACTTTCATTGCCAAATTTAGGTATGGCGGAGCGGAAGAGGAAGATGGAATGGTCGAAAGCGAATCGGAAGAGGAGTCGTACGACTCTGCCGAGGAATTCTAGGGTGTATGCTAGAAAACGACCTATATTGCGAGGTCCTAAATTGACTAGCAGGGATAAGGTTTATACGTATACGAAATACGAGACACTTACTACAGCGGGTGCGGTTTATCATCTCAATAGTTTTAGTCAGGGTTTAGCTAATAATCAACGTGCGACTTCCGTTGATATTGTTCATAATGTTCAGCTTAGGTTTTCTGTTGAGTTACCTACTGGTGCTATGGTTTTTTGTCGTCGTTACAAGATGTCATGGGCTGTTGTTCAAGATATGATGCCGGGAGATAGTATGCCAGCGGTCAGCGATATTTTTAGTATGACTTCTCCTCCTATTGAAGGTTTGGAGTATATTGCTGATGATAATCATCGCAGATTTCAAGTTAAAAAATTTGGAATTTTGTACTTGGAATCTGGTGGTGCTGACTACTCTGTTAATACTGGAAAGCAGACGTACAACGTACAAGATGCTTTGAAAAGGGTCTTCGTGAAGTGCAATACACGCGGTGTGTATGATAGTAACAGCTCTGCTGGTTCTATCAGTGCTATGAATTCTGGGGCTTTGTATTTTGTTGTAAATCCCACTTTCGCTGGGTATTTGGGTTTCAACATTACTGTGTATCATAATTCACCTGTTTAATACAGGTTTTTATTAATAAAGAAGTATTCTACATTTTGTTGTGACCATTCATAGATATCGCTATTCTGTATAGCTGTTTCGTATGATTGATCAGAATTACATAGGATAATAGATGGTATTCCTCCCTTTATTCTACATTTTTTCTTATATTTTTCGTTTACTGTGAAATCCTTTTGTGCTCCTAGGATTTCTTTTTTACATGGTAAAAACTGGAAAGGAATATCATCGAATACATTATATAACGCCGTGTTGTCATAGTTTGACCAGTCGACTCCTCCGCAGTAGTAATTATGTTTTCCCAAGCTTCTTGCCCATGCTGTTTTTCCACATCTCGTTGGACCTTCAATTATTGCGGTGGTGGGTCGGTCTGGTACCAGTTCTGGTTCCTATAAACAAAATATGAAGGTGACTCAGCTTGGTTTTCCCATGCTTCACGAATTTCCATTTTCGTTGTTTCTGATGCCCAGACCAAGTCTGAAAAATCAGCAGTAGGATTGATGTGAAGATAGGTATCGAAGCTTACGCAGTAGAGGTTTTGATCTGCCCAGTGTTGTAAGGACTCTGGAATGCCAATAAAATTTGTCCATCTGGGTTGATAACTCTCAGGGGGTGTGGGCCATTGTTTATCAGCCATGTATTCGAGGTTTCTATAGTTGTTGGCATACGTGTAGGGCTGTTCGGCCAGTACTCTGGTGAGGAAGTCAGACTTGGATGTGGATTCTGAGAGAATTCTTGTCCAGATAGCGTCTCTATTCTTCTTCGGACTTCTTCGGGAAGCTCTAAGAATACCTCTCTCCTCAAAGGTACCCCCCTTGGAAATGTAGTCCGCAACATCTGCATCCCTTCTTGGGATCTGGATGTTTGGATGATAAATTCCCGATCCGTTAGGGTCGGTGATGTCGAAGAACCTCTGGTTCTGCGTCTGAAACCTCTTCTCAGTCTGTACCAGACAGTGGATGTGTGGCTCTCCATCTTGATGGTTTTCCGTACAAGCTCTAACGTATGTGACGTTATAATCTTTTAGTAATTGAAAAAAGTAATCGATAATGAAAATTGGAATTAGAGGACACTTTGGATAGGTTAGAAAAAAGGATTTGCCCTGGATTTTAAAGGAAGAGGGTTGGCGAGGCATAGCTGCTGGCGCTACAGTGCTTTCTATTGTTTATTGTATTACAAGGATGGTGATCAGTTGATCAGTTATATACTAAATTAAATGGGCCGAATAGTGTTGGGCCGATTTATTGGGCTTCGTCAACTGGGGCACATCCTTTTAATATT

Gene Information

NCBI Accession ASU08499.1
Location 285-548
Protein Name hypothetical protein
Coding Region ATGGAGTGGTCTTTTAACGCAGTGGTGTACATTATTGTGTACATTTGTACGCTATTCGTTACGCTCGTTAATGGATATTCCGTTATACGAAGTGAACGACTATCCCGGCGTCTACAATCAATTTCTACAGACTTGCGCCAATCGTCTAATTTCTTGGCAATTATCGAAGGTTCAATTGGAGCTCGACGTGAAAGGAATTTCAATCGACCGGAAGGAGCAGCTTCTGAAACTCCAGTAGTTCCTCGAGGAGTTCAAGAAGTTTAA
Protein Sequence MEWSFNAVVYIIVYICTLFVTLVNGYSVIRSERLSRRLQSISTDLRQSSNFLAIIEGSIGARRERNFNRPEGAASETPVVPRGVQEV

NCBI Accession ASU08500.1
Location 355-522
Protein Name hypothetical protein
Coding Region ATGGATATTCCGTTATACGAAGTGAACGACTATCCCGGCGTCTACAATCAATTTCTACAGACTTGCGCCAATCGTCTAATTTCTTGGCAATTATCGAAGGTTCAATTGGAGCTCGACGTGAAAGGAATTTCAATCGACCGGAAGGAGCAGCTTCTGAAACTCCAGTAG
Protein Sequence MDIPLYEVNDYPGVYNQFLQTCANRLISWQLSKVQLELDVKGISIDRKEQLLKLQ

NCBI Accession ASU08496.1
Location 623-1333
Protein Name capsid protein
Coding Region ATGGCGGAGCGGAAGAGGAAGATGGAATGGTCGAAAGCGAATCGGAAGAGGAGTCGTACGACTCTGCCGAGGAATTCTAGGGTGTATGCTAGAAAACGACCTATATTGCGAGGTCCTAAATTGACTAGCAGGGATAAGGTTTATACGTATACGAAATACGAGACACTTACTACAGCGGGTGCGGTTTATCATCTCAATAGTTTTAGTCAGGGTTTAGCTAATAATCAACGTGCGACTTCCGTTGATATTGTTCATAATGTTCAGCTTAGGTTTTCTGTTGAGTTACCTACTGGTGCTATGGTTTTTTGTCGTCGTTACAAGATGTCATGGGCTGTTGTTCAAGATATGATGCCGGGAGATAGTATGCCAGCGGTCAGCGATATTTTTAGTATGACTTCTCCTCCTATTGAAGGTTTGGAGTATATTGCTGATGATAATCATCGCAGATTTCAAGTTAAAAAATTTGGAATTTTGTACTTGGAATCTGGTGGTGCTGACTACTCTGTTAATACTGGAAAGCAGACGTACAACGTACAAGATGCTTTGAAAAGGGTCTTCGTGAAGTGCAATACACGCGGTGTGTATGATAGTAACAGCTCTGCTGGTTCTATCAGTGCTATGAATTCTGGGGCTTTGTATTTTGTTGTAAATCCCACTTTCGCTGGGTATTTGGGTTTCAACATTACTGTGTATCATAATTCACCTGTTTAA
Protein Sequence MAERKRKMEWSKANRKRSRTTLPRNSRVYARKRPILRGPKLTSRDKVYTYTKYETLTTAGAVYHLNSFSQGLANNQRATSVDIVHNVQLRFSVELPTGAMVFCRRYKMSWAVVQDMMPGDSMPAVSDIFSMTSPPIEGLEYIADDNHRRFQVKKFGILYLESGGADYSVNTGKQTYNVQDALKRVFVKCNTRGVYDSNSSAGSISAMNSGALYFVVNPTFAGYLGFNITVYHNSPV

NCBI Accession ASU08498.1
Location NA
Protein Name replication-associated protein
Coding Region ATGCCTCGCCAACCCTCTTCCTTTAAAATCCAGGGCAAATCCTTTTTTCTAACCTATCCAAAGTGTCCTCTAATTCCAATTTTCATTATCGATTACTTTTTTCAATTACTAAAAGATTATAACGTCACATACGTTAGAGCTTGTACGGAAAACCATCAAGATGGAGAGCCACACATCCACTGTCTGGTACAGACTGAGAAGAGGTTTCAGACGCAGAACCAGAGGTTCTTCGACATCACCGACCCTAACGGATCGGGAATTTATCATCCAAACATCCAGATCCCAAGAAGGGATGCAGATGTTGCGGACTACATTTCCAAGGGGGGTACCTTTGAGGAGAGAGGTATTCTTAGAGCTTCCCGAAGAAGTCCGAAGAAGAATAGAGACGCTATCTGGACAAGAATTCTCTCAGAATCCACATCCAAGTCTGACTTCCTCACCAGAGTACTGGCCGAACAGCCCTACACGTATGCCAACAACTATAGAAACCTCGAATACATGGCTGATAAACAATGGCCCACACCCCCTGAGAGTTATCAACCCAGATGGACAAATTTTATTGGCATTCCAGAGTCCTTACAACACTGGGCAGATCAAAACCTCTACTGCGAACCAGAACTGGTACCAGACCGACCCACCACCGCAATAATTGAAGGTCCAACGAGATGTGGAAAAACAGCATGGGCAAGAAGCTTGGGAAAACATAATTACTACTGCGGAGGAGTCGACTGGTCAAACTATGACAACACGGCGTTATATAATGTATTCGATGATATTCCTTTCCAGTTTTTACCATGTAAAAAAGAAATCCTAGGAGCACAAAAGGATTTCACAGTAAACGAAAAATATAAGAAAAAATGTAGAATAAAGGGAGGAATACCATCTATTATCCTATGTAATTCTGATCAATCATACGAAACAGCTATACAGAATAGCGATATCTATGAATGGTCACAACAAAATGTAGAATACTTCTTTATTAATAAAAACCTGTATTAA
Protein Sequence MPRQPSSFKIQGKSFFLTYPKCPLIPIFIIDYFFQLLKDYNVTYVRACTENHQDGEPHIHCLVQTEKRFQTQNQRFFDITDPNGSGIYHPNIQIPRRDADVADYISKGGTFEERGILRASRRSPKKNRDAIWTRILSESTSKSDFLTRVLAEQPYTYANNYRNLEYMADKQWPTPPESYQPRWTNFIGIPESLQHWADQNLYCEPELVPDRPTTAIIEGPTRCGKTAWARSLGKHNYYCGGVDWSNYDNTALYNVFDDIPFQFLPCKKEILGAQKDFTVNEKYKKKCRIKGGIPSIILCNSDQSYETAIQNSDIYEWSQQNVEYFFINKNLY

NCBI Accession ASU08497.1
Location 1680-2465
Protein Name RepA
Coding Region ATGCCTCGCCAACCCTCTTCCTTTAAAATCCAGGGCAAATCCTTTTTTCTAACCTATCCAAAGTGTCCTCTAATTCCAATTTTCATTATCGATTACTTTTTTCAATTACTAAAAGATTATAACGTCACATACGTTAGAGCTTGTACGGAAAACCATCAAGATGGAGAGCCACACATCCACTGTCTGGTACAGACTGAGAAGAGGTTTCAGACGCAGAACCAGAGGTTCTTCGACATCACCGACCCTAACGGATCGGGAATTTATCATCCAAACATCCAGATCCCAAGAAGGGATGCAGATGTTGCGGACTACATTTCCAAGGGGGGTACCTTTGAGGAGAGAGGTATTCTTAGAGCTTCCCGAAGAAGTCCGAAGAAGAATAGAGACGCTATCTGGACAAGAATTCTCTCAGAATCCACATCCAAGTCTGACTTCCTCACCAGAGTACTGGCCGAACAGCCCTACACGTATGCCAACAACTATAGAAACCTCGAATACATGGCTGATAAACAATGGCCCACACCCCCTGAGAGTTATCAACCCAGATGGACAAATTTTATTGGCATTCCAGAGTCCTTACAACACTGGGCAGATCAAAACCTCTACTGCGTAAGCTTCGATACCTATCTTCACATCAATCCTACTGCTGATTTTTCAGACTTGGTCTGGGCATCAGAAACAACGAAAATGGAAATTCGTGAAGCATGGGAAAACCAAGCTGAGTCACCTTCATATTTTGTTTATAGGAACCAGAACTGGTACCAGACCGACCCACCACCGCAATAA
Protein Sequence MPRQPSSFKIQGKSFFLTYPKCPLIPIFIIDYFFQLLKDYNVTYVRACTENHQDGEPHIHCLVQTEKRFQTQNQRFFDITDPNGSGIYHPNIQIPRRDADVADYISKGGTFEERGILRASRRSPKKNRDAIWTRILSESTSKSDFLTRVLAEQPYTYANNYRNLEYMADKQWPTPPESYQPRWTNFIGIPESLQHWADQNLYCVSFDTYLHINPTADFSDLVWASETTKMEIREAWENQAESPSYFVYRNQNWYQTDPPPQ

References More References in PubMed

1

A novel geminivirus identified in tomato and cleome plants sampled in Brazil.

Fontenele RS, et al.  Virus Res. 2017 Aug 15;240:175-179. doi: 10.1016/j.virusres.2017.08.007. Epub 2017 Aug 23.

PMID: 28843502
2

Tomato auxin biosynthesis/signaling is reprogrammed by the geminivirus to enhance its pathogenicity.

Vinutha T, et al.  Planta. 2020 Sep 17;252(4):51. doi: 10.1007/s00425-020-03452-9.

PMID: 32940767
3

Crinivirus Tomato Chlorosis Virus Compromises the Control of Tomato Yellow Leaf Curl Virus in Tomato Plants by the Ty-1 Gene.

Fortes IM, et al.  Phytopathology. 2023 Jul;113(7):1347-1359. doi: 10.1094/PHYTO-09-22-0334-R. Epub 2023 Aug 29.

PMID: 36690608
4

Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection.

Shen W, et al.  Plant Physiol. 2018 Sep;178(1):372-389. doi: 10.1104/pp.18.00268. Epub 2018 Jul 13.

PMID: 30006378
5

Breakdown of Ty-1-based resistance to tomato yellow leaf curl virus in tomato plants at high temperatures.

Koeda S, et al.  Phytopathology. 2023 Jun 15. doi: 10.1094/PHYTO-04-23-0119-R. Online ahead of print.

PMID: 37321561
6

Small RNA Profiling of Susceptible and Resistant Ty-1 Encoding Tomato Plants Upon Tomato Yellow Leaf Curl Virus Infection.

Voorburg CM, et al.  Front Plant Sci. 2021 Nov 18;12:757165. doi: 10.3389/fpls.2021.757165. eCollection 2021.

PMID: 34868151
7

A New Geminivirus Associated with Tomato in the State of São Paulo, Brazil.

Faria JC, et al.  Plant Dis. 1997 Apr;81(4):423. doi: 10.1094/PDIS.1997.81.4.423B.

PMID: 30861828
8

Metagenomics of Neotropical Single-Stranded DNA Viruses in Tomato Cultivars with and without the Ty-1 Gene.

de Nazaré Almeida Dos Reis L, et al.  Viruses. 2020 Jul 28;12(8):819. doi: 10.3390/v12080819.

PMID: 32731641
9

Accumulation and transmission of alphasatellite, betasatellite and tomato yellow leaf curl virus in susceptible and Ty-1-resistant tomato plants.

Conflon D, et al.  Virus Res. 2018 Jul 15;253:124-134. doi: 10.1016/j.virusres.2018.06.003. Epub 2018 Jun 15.

PMID: 29908896
10

First Report of Tomato Mottle Geminivirus Infecting Tomatoes in Yucatan, Mexico.

Garrido-Ramirez ER, et al.  Plant Dis. 1998 May;82(5):592. doi: 10.1094/PDIS.1998.82.5.592B.

PMID: 30857003