Tomato apical leaf curl virus
Basic Information
| Genus |
Topilevirus
|
| NCBI Assembly |
GCF_002890115.1 |
| Isolate |
Argentina |
| Release date |
2018/1/18 |
| Submitter |
Vaghi Medina,G., Teppa,E., Bornancini,V.A., Flores,C.R., Marino Buslje,C., Lopez Lambertini,P.M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACGGCTTTGCCCCTCACTCTCTGTCCCATATTATCTGCCACGTGGTTGGTCAGCCTTAACTTACGGAAAAGTTGTCGGGTAAAGTAAAAAGTAGCCGCATCTTTTGACTTATTTCAAAAGTGTATGGCCCCTATGTTTTGGCGGGAAACCTTTCCGTAACCTCTATTACTTGCTTCGCAAGTAATCTTATTATAAAAGTATAAAGAAATGAATAAAAAATTCAATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAAAATATTTTACTTTGTTCTTACGTATATCAATCGTCACCCTCACTTTCCCCCCCAAGAAAGTGTTCATACGGTTGAGTCCTGAGCCCTCACCTTCCCCCCCAAATAAGCACGCGTTCTTTGATTTGGTAGGGCTTTAGCCCTACCAAATCAAAAGAACAAGATGGATGAAAAAATTAGTGGTTTATCTTGGTAGCAATTCCCTAAAGGGTTCAGCAATAGCAGAGTTACATTCATACGGAACAGGGTATAGTATGATATTAAAATTCTAAAAAAGCGATCCATCAATGAACTCATAAAGGACATTAGACTGACACCAAACATACAAATCAGAACGACTAATAGCCTCCTTATAAGAGCTATCAGGATTACATAATACTATTGAAGGAATGCCTCCTTTTATTGTACATTTTTTCCTATACTTTTCATTAACCGTGAAATCTTTTTGTGCTCCAAGTATTTCCTTTTTGCACGGCAAGTATTGAAATGGTATGTCGTCGAAAACATTATATATAGCGTGGGGATTGTACTCAGTCCAGTTCACTCCTCCGCAGAAATAATTGTGTAGTCCGAAGCTTCTTGCCCATGCTGTTTTACCTGTTCTTGTTGGGCCTTCAACAATGAGTGTTAATGGCCTATCGGGCTTATTCTCCGGGTCCTGAATCATTATAAATGTGTGGTCTAATGTTAGTAAAGTTATCTGGGTTTTCAAGAATCTGTTCTATAGATTCTTGTGCCATACTATCGTAAAAATCTAAATCATTTTGTGTTAATTGTGGAACGTCTAACAAAATGAAATCTCTATGTACCACGCATATGTTCTGTTCTACCCAATTTTTAATGGGCTCGGGTACGCCATTGAATATTGAGAATTTGGGTGTAAAATTCGCACTTGGTTTTGGCCACTTTTTGTTGGCCATGTATTCGAGGTTTCGCAGTTGTGTTGCGTATGTATAAGGTTGTTCTCGTTGACATCTGCTGAGGAAGTCCTCGGCGTTAGTGGATTCCTCGATGATCTTTCCCCATATAGTATCCCGAGATTTCTTAGGACTGCGTCTTGAAGCTCTAAGTAATCCTCGTTCCTCATATACTCCTCCCTTAGCGATGTAGTCTGCAACGTCAGCGTCCCTTCTTGGAATCTGGGCGTTTGGATGGTATGTGCTCTCTCTATTAGGGTCTGAAATGTCGAAGAATCTTGGGTTTCTTGTACTGAACTTCTCCTCCAATTGGACGAGGCAGTGGAGATGCAGCTCCCCATCTTGATGAGTTTCTTGACAGACCCTTGCATATGTAATTTTAAAATCATTTAATAGCTGAAATAAATAGTCTATGACGAATAATGGAATAAGAGGGCATTTTGGGTATGTAAGGAAAATTGATTTTCCCTGTAGGCGGAAGGTGTTTGGTGTTCTTGGCATTTTTCTCTCTATTATATTCTATTACTATGGCTTTGCGGAGTCAGAGCCAATTTATAGTCGAAGGTGTTAAATGGGCTTTGTGGCTCTATTCATGTGAGCCGTTGATTGTTGTAGTACGTGGCAGAAATCCGTGAAGGGGCAAAGCCATATAATATT
Gene Information
|
NCBI Accession
|
YP_009448197.1
|
|
Location
|
224-523 |
|
Gene Name
|
V3 |
|
Protein Name
|
putative ssDNA-dsDNA regulatory protein |
|
Coding Region
|
ATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAA |
|
Protein Sequence
|
MDWTFNAWVYLFVFISTVIITVFNGVTSIQLLRISEKLQRISADLRGSISHLAITIGVAEGRVFQPSQGGRVLRVGRTVSVPNRVQEDRPTGGETQVSP |
|
NCBI Accession
|
YP_009448198.1
|
|
Location
|
294-650 |
|
Gene Name
|
V2 |
|
Protein Name
|
putative movement protein |
|
Coding Region
|
ATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAG |
|
Protein Sequence
|
MELPVYSSSEYPKSYNAFLQTCADRLVTWQLQLVWQKVEYFNRHKADEFFEWEELYQFLIEFRKTVRRAGRRKSHHKKIEIYNLFWIKRDGSKSGVNKLGCEEKAKYSKPFELDSESS |
|
NCBI Accession
|
YP_009448199.1
|
|
Location
|
562-1302 |
|
Gene Name
|
V1 |
|
Protein Name
|
putative coat protein |
|
Coding Region
|
ATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAA |
|
Protein Sequence
|
MGANQALISWGAKKKRSTPNRSSWTRRVRRRLSYYPRYIPRGPKKNTRDKVYTFTSYKAFSDLGGVWLLNGFAQGLGNNQRNGSVEIIRALNLRLGVAIAEGATALNFARDWNCTWYVIADQSPGTTIPAFTDIFTTGSAAVDGLEYIPDDMHLRFQIKMKGKLKFITSGVSYSTAVTSKTGYNKCHDIVRKFKSKLNVRTDYDSNSSGGAITDIKKGALYLVINPEFSCYAGVNCTIYHSGPYYK |
|
NCBI Accession
|
YP_009448200.1
|
|
Location
|
1568-1957,2109-2717 |
|
Gene Name
|
C1:C2 |
|
Protein Name
|
putative replication associated protein |
|
Coding Region
|
ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGACCCGGAGAATAAGCCCGATAGGCCATTAACACTCATTGTTGAAGGCCCAACAAGAACAGGTAAAACAGCATGGGCAAGAAGCTTCGGACTACACAATTATTTCTGCGGAGGAGTGAACTGGACTGAGTACAATCCCCACGCTATATATAATGTTTTCGACGACATACCATTTCAATACTTGCCGTGCAAAAAGGAAATACTTGGAGCACAAAAAGATTTCACGGTTAATGAAAAGTATAGGAAAAAATGTACAATAAAAGGAGGCATTCCTTCAATAGTATTATGTAATCCTGATAGCTCTTATAAGGAGGCTATTAGTCGTTCTGATTTGTATGTTTGGTGTCAGTCTAATGTCCTTTATGAGTTCATTGATGGATCGCTTTTTTAG |
|
Protein Sequence
|
MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVDPENKPDRPLTLIVEGPTRTGKTAWARSFGLHNYFCGGVNWTEYNPHAIYNVFDDIPFQYLPCKKEILGAQKDFTVNEKYRKKCTIKGGIPSIVLCNPDSSYKEAISRSDLYVWCQSNVLYEFIDGSLF |
|
NCBI Accession
|
YP_009448201.1
|
|
Location
|
1944-2717 |
|
Gene Name
|
C1 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGTACATAGAGATTTCATTTTGTTAGACGTTCCACAATTAACACAAAATGATTTAGATTTTTACGATAGTATGGCACAAGAATCTATAGAACAGATTCTTGAAAACCCAGATAACTTTACTAACATTAGACCACACATTTATAATGATTCAGGACCCGGAGAATAA |
|
Protein Sequence
|
MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVVHRDFILLDVPQLTQNDLDFYDSMAQESIEQILENPDNFTNIRPHIYNDSGPGE |
|
NCBI Accession
|
YP_009448202.1
|
|
Location
|
2126-2605 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAG |
|
Protein Sequence
|
MILKLHMQGSVKKLIKMGSCISTASSNWRRSSVQETQDSSTFQTLIERAHTIQTPRFQEGTLTLQTTSLREEYMRNEDYLELQDAVLRNLGILYGERSSRNPLTPRTSSADVNENNLIHTQHNCETSNTWPTKSGQNQVRILHPNSQYSMAYPSPLKIG |