Genus | Topilevirus |
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NCBI Assembly | GCF_002890115.1 |
Isolate | Argentina |
Release date | 2018/1/18 |
Submitter | Vaghi Medina,G., Teppa,E., Bornancini,V.A., Flores,C.R., Marino Buslje,C., Lopez Lambertini,P.M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009448197.1 |
---|---|
Location | 224-523 |
Gene Name | V3 |
Protein Name | putative ssDNA-dsDNA regulatory protein |
Coding Region | ATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAA |
Protein Sequence | MDWTFNAWVYLFVFISTVIITVFNGVTSIQLLRISEKLQRISADLRGSISHLAITIGVAEGRVFQPSQGGRVLRVGRTVSVPNRVQEDRPTGGETQVSP |
NCBI Accession | YP_009448198.1 |
---|---|
Location | 294-650 |
Gene Name | V2 |
Protein Name | putative movement protein |
Coding Region | ATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAG |
Protein Sequence | MELPVYSSSEYPKSYNAFLQTCADRLVTWQLQLVWQKVEYFNRHKADEFFEWEELYQFLIEFRKTVRRAGRRKSHHKKIEIYNLFWIKRDGSKSGVNKLGCEEKAKYSKPFELDSESS |
NCBI Accession | YP_009448199.1 |
---|---|
Location | 562-1302 |
Gene Name | V1 |
Protein Name | putative coat protein |
Coding Region | ATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAA |
Protein Sequence | MGANQALISWGAKKKRSTPNRSSWTRRVRRRLSYYPRYIPRGPKKNTRDKVYTFTSYKAFSDLGGVWLLNGFAQGLGNNQRNGSVEIIRALNLRLGVAIAEGATALNFARDWNCTWYVIADQSPGTTIPAFTDIFTTGSAAVDGLEYIPDDMHLRFQIKMKGKLKFITSGVSYSTAVTSKTGYNKCHDIVRKFKSKLNVRTDYDSNSSGGAITDIKKGALYLVINPEFSCYAGVNCTIYHSGPYYK |
NCBI Accession | YP_009448200.1 |
---|---|
Location | 1568-1957,2109-2717 |
Gene Name | C1:C2 |
Protein Name | putative replication associated protein |
Coding Region | ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGACCCGGAGAATAAGCCCGATAGGCCATTAACACTCATTGTTGAAGGCCCAACAAGAACAGGTAAAACAGCATGGGCAAGAAGCTTCGGACTACACAATTATTTCTGCGGAGGAGTGAACTGGACTGAGTACAATCCCCACGCTATATATAATGTTTTCGACGACATACCATTTCAATACTTGCCGTGCAAAAAGGAAATACTTGGAGCACAAAAAGATTTCACGGTTAATGAAAAGTATAGGAAAAAATGTACAATAAAAGGAGGCATTCCTTCAATAGTATTATGTAATCCTGATAGCTCTTATAAGGAGGCTATTAGTCGTTCTGATTTGTATGTTTGGTGTCAGTCTAATGTCCTTTATGAGTTCATTGATGGATCGCTTTTTTAG |
Protein Sequence | MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVDPENKPDRPLTLIVEGPTRTGKTAWARSFGLHNYFCGGVNWTEYNPHAIYNVFDDIPFQYLPCKKEILGAQKDFTVNEKYRKKCTIKGGIPSIVLCNPDSSYKEAISRSDLYVWCQSNVLYEFIDGSLF |
NCBI Accession | YP_009448201.1 |
---|---|
Location | 1944-2717 |
Gene Name | C1 |
Protein Name | RepA |
Coding Region | ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGTACATAGAGATTTCATTTTGTTAGACGTTCCACAATTAACACAAAATGATTTAGATTTTTACGATAGTATGGCACAAGAATCTATAGAACAGATTCTTGAAAACCCAGATAACTTTACTAACATTAGACCACACATTTATAATGATTCAGGACCCGGAGAATAA |
Protein Sequence | MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVVHRDFILLDVPQLTQNDLDFYDSMAQESIEQILENPDNFTNIRPHIYNDSGPGE |
NCBI Accession | YP_009448202.1 |
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Location | 2126-2605 |
Gene Name | C3 |
Protein Name | C3 |
Coding Region | ATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAG |
Protein Sequence | MILKLHMQGSVKKLIKMGSCISTASSNWRRSSVQETQDSSTFQTLIERAHTIQTPRFQEGTLTLQTTSLREEYMRNEDYLELQDAVLRNLGILYGERSSRNPLTPRTSSADVNENNLIHTQHNCETSNTWPTKSGQNQVRILHPNSQYSMAYPSPLKIG |
1 |
McLaughlin A, et al. Plant Dis. 2022 Apr 12. doi: 10.1094/PDIS-09-20-2041-PDN. Online ahead of print. PMID: 35412338 |
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2 |
Tomato Apical Leaf Curl Virus: A Novel, Monopartite Geminivirus Detected in Tomatoes in Argentina. Vaghi Medina CG, et al. Front Microbiol. 2018 Jan 12;8:2665. doi: 10.3389/fmicb.2017.02665. eCollection 2017. PMID: 29375528 |
3 |
Jeevalatha A, et al. 3 Biotech. 2021 Apr;11(4):203. doi: 10.1007/s13205-021-02752-5. Epub 2021 Mar 30. PMID: 33927993 |
4 |
Kumar R, et al. Antioxidants (Basel). 2023 Jul 18;12(7):1447. doi: 10.3390/antiox12071447. PMID: 37507984 |
5 |
First report of Tomato brown rugose fruit virus in tomato in Spain. Alfaro-Fernández A, et al. Plant Dis. 2020 Sep 23. doi: 10.1094/PDIS-06-20-1251-PDN. Online ahead of print. PMID: 32967554 |
6 |
Jeevalatha A, et al. Virus Res. 2017 Mar 15;232:22-33. doi: 10.1016/j.virusres.2017.01.015. Epub 2017 Jan 20. PMID: 28115198 |
7 |
Jeevalatha A, et al. Funct Integr Genomics. 2023 Jun 30;23(3):215. doi: 10.1007/s10142-023-01138-5. PMID: 37389664 |
8 |
Jeevalatha A, et al. J Virol Methods. 2013 Oct;193(1):62-7. doi: 10.1016/j.jviromet.2013.05.012. Epub 2013 May 24. PMID: 23711886 |
9 |
Lal MK, et al. Food Chem. 2021 Oct 15;359:129939. doi: 10.1016/j.foodchem.2021.129939. Epub 2021 Apr 23. PMID: 33957333 |
10 |
Ber R, et al. Arch Virol. 1990;112(3-4):169-80. doi: 10.1007/BF01323162. PMID: 2378566 |