Opuntia virus 1


Basic Information

Genus Opunvirus
NCBI Assembly GCF_018587595.1
Isolate USA
Release date 2021/6/1
Submitter Fontenele,R.S., Schmidlin,K., Majure,L., Salywon,A., Kraberger,S., Wojciechowski,M., Cobb,I., Varsani,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055584
TAATATTACCTGATGGCCGCGCCCCCTTTAAAGTGGGCCCCCTGGACAGATGGCAGATGTTGAGTGGAAGTGCACTGTTATGGACCGGTGGCATTTTTGTAAATATGTGGAACGTTAGATAATGCGGTACGCATTATCGGCAACTTTAACCTTAATTTAAATTAAAGTTAAAGATAGTGGATATGGGAATGATTATGTCTTCTTTAAATTGAATTGCTTGGGACAGAGTGTTTCATTGATTGAGATGGATAGGACTGATAGGGGTCAGTTGACTAGACTTGTGTTCAGGTACGGATTTGCTGTGGTGTTGAAGGAGCTGAATACGGAGGCCCTGAATAGTCCGTATTTGTGGGAGCAATTTTGGCATGCAGTCAGGTACACCGAGGAAACGATATGCCGGGATTTTGTCTCCTTCAGGAGGCATAAGGAAGAGTGCGAGAAGGAGGTTGGTGTTTTCTACACCAACAAAAAAGAGTGGCCAGGGGAGCTTGACCCCACGGTTAAGGAGACAACCGCAGCTGCAGACGGTTCACCGGCAGCAGGTGACGGTTGATTGTGATGGGAAGTGTCCGCATGGTTCAATATTGTGCAAGATATTGAATGATATGTCTCTGGGTCAGGATGAGACCCAGAGACATAGTAATAAGGTGAATTTCACTTATGTTAGTATTAGAGGGGAGCTGGATCTGGCTGATGTTCATCAGGATTTGACTGCTTGGTATGGGCAGAAGCAGTATATTTTTTTGTGGTTATTTTTAGATAGGACAGTCAGAGGAGATACGTTTGATATAGGTGACTTTTTTAAGGGATCAATTACTGATCCCGAGCAGTGGTTTGTTAATTCTAATAATAGGGATAGATATATATTGTTGAAGAAGAGGAGGATTATGTTTCAGCTTCCTTGTAAGCAGAAGGATTCTGCGGGTGTTTTTAATTGTATTAGTAGTCATGATAGGTATAAGCCATTTGAGTTTAGGAAGAGGTTAATGTTTCAGAGTCATTGGGATAATACGGGGAAGTTAGTTAGGAATAGGTTGTTGTTGTTAGCGACTGTGGGTAAGGCTGTTGAGATTACTATGAACAGCCAGATGAGATTGTATTTCAATTCAGCATGATTAATAAAGGAGAAATTTTATATCATATTTTGTGTTTCTGATTTCATATACATATTTGGATACATCAAAGAAATAATATATTGCTCTTGCAATATTATTTATGCTTACAACACCTAAATTATTTAAGTAAAAAAATACATGGTGTTTAAATCTAGTCAAGAATGAACTCCCAGTCGCTGTAATCAGAGTAGTAAGTATCTCTGTCTGGATCCAGCATTTGTGTAAGCCTAGCTCTTTTCGGAGGTTGTGGTTTGCCTGGATCCGGATGCGGAATAACTGTCCTTGAGAATTGTCCCCTGTGAATAACAGTTTCATGTATAGGGGATTGGGGACCTTCCATATGAAGGTCCCAGTCTCTGCTTGAAATGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGCCACAAGCTTTGGAGTAGAGGAATGTGCATTTGCATTCCAGGTGGAATGCAATTCTTCGTTCTCTTCTTCTTTTGTTCTTGGCATTCTTATGCTGGAGTCTGATGTCATGGACTGGGCAGTCAATGTACTTGTCTCTGTGGCATTGGACAGGATCAGAGCATGATTGAATGGGGTTGTTATAAATAGGTGTAGTTGGGGAAGGAGGAAGGGGTTTTATTTCAGTGGAGGGATCAGAAGAGTGGCTGGGTGATGAATATGAAATAGGCATTTTGGAGTGTCCACTCTTTCAATGCTCTATTTTCGTCCTTGTCCAGAAACTCTTTATAAGATGTTTCTGGTCCTGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTACAGTTGCTTTGCCAGTCTCTTTGGGCCCCAATAAGTTCTTTCCAATGTTTTAGCTTTAGATAGTGCGGTGTGATGTCATCAATGACATTATACATCGCACTGTTGCTAAAACATTTACTGTTGAAATCTAGGTGCCCTGATAGATAATTATGGGCACCTAGTGATCTAGCCCACGCAGTTTTTCCGGTTCTGCTAGGACCTTCAACAATTAGACTTTTGGGTCTATGCCCTATGACATTATTAACAATTGGCCCCGCAGGGGAAGTAACATCAAACTCAAATGTCTCCCCTAGCCATTGTTCCATGTCATCTGTAATTTTAAAATGTGAAAAAATATTTTCAAATGGTTTAGGTGGAGGAGCAAATATTTTGTCCAAATTACTGTTAATGTTGTGAAACATTAACACGTAATGCTGGGGTTGTTCCTCTCTTATTATTCTCATTGCCTCGTCTTTGGATGTGGCATTGAGTGCTTTTGCATAAGAATCATTGGCAGATTGTTTACCTCCTCTTGCAGATCTGCCGTCTATTTGGAAAACTCCAAAATCCAATACATCTCCGTCTTTCTCCATATAAGTTTTGCAGTCGGAGGAGGACTTGGCGGATTGAATGTTTGGATGGAATTGAATGGAGGAATGGGGGTGTCGAAGATCGAAGAATCTATTATTTTGGCACTTGAATTTGGATTCGAATTGGATAAGCACATGGAGATGAGGTTCCCCATTTTGATGTAATTCTCGGCAGATTCGGATGAATTTAATGTTTGTTGGAGTGTGGAGGTTTTGAAGTTGGGAGAGTGCTTCTTCTTTGGAGAGGGAGCATTTGGGGAAAGTGAGGAAATAATTTTTGGAGTTAATTAAAAATTTGGGTCTTGTCATTTTGCAAGACTGACGTGTCAAAAAATAAAACGACTGCGTTTTGTTATTTGACACTACAGCCTTGTAAGTTGAGGACCCGATAGGTTTGCTCTCACAAAACTCTGAGGAACCAATATATTGGGTCCTTATTTATAGCGGCCATCAGAAA

Gene Information

NCBI Accession YP_010087791.1
Location 245-553
Gene Name mp
Protein Name putative movement protein
Coding Region ATGGATAGGACTGATAGGGGTCAGTTGACTAGACTTGTGTTCAGGTACGGATTTGCTGTGGTGTTGAAGGAGCTGAATACGGAGGCCCTGAATAGTCCGTATTTGTGGGAGCAATTTTGGCATGCAGTCAGGTACACCGAGGAAACGATATGCCGGGATTTTGTCTCCTTCAGGAGGCATAAGGAAGAGTGCGAGAAGGAGGTTGGTGTTTTCTACACCAACAAAAAAGAGTGGCCAGGGGAGCTTGACCCCACGGTTAAGGAGACAACCGCAGCTGCAGACGGTTCACCGGCAGCAGGTGACGGTTGA
Protein Sequence MDRTDRGQLTRLVFRYGFAVVLKELNTEALNSPYLWEQFWHAVRYTEETICRDFVSFRRHKEECEKEVGVFYTNKKEWPGELDPTVKETTAAADGSPAAGDG

NCBI Accession YP_010087792.1
Location 366-1115
Gene Name cp
Protein Name capsid protein
Coding Region ATGCAGTCAGGTACACCGAGGAAACGATATGCCGGGATTTTGTCTCCTTCAGGAGGCATAAGGAAGAGTGCGAGAAGGAGGTTGGTGTTTTCTACACCAACAAAAAAGAGTGGCCAGGGGAGCTTGACCCCACGGTTAAGGAGACAACCGCAGCTGCAGACGGTTCACCGGCAGCAGGTGACGGTTGATTGTGATGGGAAGTGTCCGCATGGTTCAATATTGTGCAAGATATTGAATGATATGTCTCTGGGTCAGGATGAGACCCAGAGACATAGTAATAAGGTGAATTTCACTTATGTTAGTATTAGAGGGGAGCTGGATCTGGCTGATGTTCATCAGGATTTGACTGCTTGGTATGGGCAGAAGCAGTATATTTTTTTGTGGTTATTTTTAGATAGGACAGTCAGAGGAGATACGTTTGATATAGGTGACTTTTTTAAGGGATCAATTACTGATCCCGAGCAGTGGTTTGTTAATTCTAATAATAGGGATAGATATATATTGTTGAAGAAGAGGAGGATTATGTTTCAGCTTCCTTGTAAGCAGAAGGATTCTGCGGGTGTTTTTAATTGTATTAGTAGTCATGATAGGTATAAGCCATTTGAGTTTAGGAAGAGGTTAATGTTTCAGAGTCATTGGGATAATACGGGGAAGTTAGTTAGGAATAGGTTGTTGTTGTTAGCGACTGTGGGTAAGGCTGTTGAGATTACTATGAACAGCCAGATGAGATTGTATTTCAATTCAGCATGA
Protein Sequence MQSGTPRKRYAGILSPSGGIRKSARRRLVFSTPTKKSGQGSLTPRLRRQPQLQTVHRQQVTVDCDGKCPHGSILCKILNDMSLGQDETQRHSNKVNFTYVSIRGELDLADVHQDLTAWYGQKQYIFLWLFLDRTVRGDTFDIGDFFKGSITDPEQWFVNSNNRDRYILLKKRRIMFQLPCKQKDSAGVFNCISSHDRYKPFEFRKRLMFQSHWDNTGKLVRNRLLLLATVGKAVEITMNSQMRLYFNSA

NCBI Accession YP_010087793.1
Location 1116-1514
Gene Name ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCATTTCAAGCAGAGACTGGGACCTTCATATGGAAGGTCCCCAATCCCCTATACATGAAACTGTTATTCACAGGGGACAATTCTCAAGGACAGTTATTCCGCATCCGGATCCAGGCAAACCACAACCTCCGAAAAGAGCTAGGCTTACACAAATGCTGGATCCAGACAGAGATACTTACTACTCTGATTACAGCGACTGGGAGTTCATTCTTGACTAGATTTAAACACCATGTATTTTTTTACTTAAATAATTTAGGTGTTGTAAGCATAAATAATATTGCAAGAGCAATATATTATTTCTTTGATGTATCCAAATATGTATATGAAATCAGAAACACAAAATATGATATAAAATTTCTCCTTTATTAA
Protein Sequence MDSRTGEPITAFQAETGTFIWKVPNPLYMKLLFTGDNSQGQLFRIRIQANHNLRKELGLHKCWIQTEILTTLITATGSSFLTRFKHHVFFYLNNLGVVSINNIARAIYYFFDVSKYVYEIRNTKYDIKFLLY

NCBI Accession YP_010087794.1
Location 1267-1785
Gene Name trap
Protein Name transactivator protein
Coding Region ATGCCTATTTCATATTCATCACCCAGCCACTCTTCTGATCCCTCCACTGAAATAAAACCCCTTCCTCCTTCCCCAACTACACCTATTTATAACAACCCCATTCAATCATGCTCTGATCCTGTCCAATGCCACAGAGACAAGTACATTGACTGCCCAGTCCATGACATCAGACTCCAGCATAAGAATGCCAAGAACAAAAGAAGAAGAGAACGAAGAATTGCATTCCACCTGGAATGCAAATGCACATTCCTCTACTCCAAAGCTTGTGGCCATGGATTCACGCACAGGGGAACCCATCACTGCATTTCAAGCAGAGACTGGGACCTTCATATGGAAGGTCCCCAATCCCCTATACATGAAACTGTTATTCACAGGGGACAATTCTCAAGGACAGTTATTCCGCATCCGGATCCAGGCAAACCACAACCTCCGAAAAGAGCTAGGCTTACACAAATGCTGGATCCAGACAGAGATACTTACTACTCTGATTACAGCGACTGGGAGTTCATTCTTGACTAG
Protein Sequence MPISYSSPSHSSDPSTEIKPLPPSPTTPIYNNPIQSCSDPVQCHRDKYIDCPVHDIRLQHKNAKNKRRRERRIAFHLECKCTFLYSKACGHGFTHRGTHHCISSRDWDLHMEGPQSPIHETVIHRGQFSRTVIPHPDPGKPQPPKRARLTQMLDPDRDTYYSDYSDWEFILD

NCBI Accession YP_010087795.1
Location 1748-2797
Gene Name rep
Protein Name replication associated protein
Coding Region ATGACAAGACCCAAATTTTTAATTAACTCCAAAAATTATTTCCTCACTTTCCCCAAATGCTCCCTCTCCAAAGAAGAAGCACTCTCCCAACTTCAAAACCTCCACACTCCAACAAACATTAAATTCATCCGAATCTGCCGAGAATTACATCAAAATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAATCCAAATTCAAGTGCCAAAATAATAGATTCTTCGATCTTCGACACCCCCATTCCTCCATTCAATTCCATCCAAACATTCAATCCGCCAAGTCCTCCTCCGACTGCAAAACTTATATGGAGAAAGACGGAGATGTATTGGATTTTGGAGTTTTCCAAATAGACGGCAGATCTGCAAGAGGAGGTAAACAATCTGCCAATGATTCTTATGCAAAAGCACTCAATGCCACATCCAAAGACGAGGCAATGAGAATAATAAGAGAGGAACAACCCCAGCATTACGTGTTAATGTTTCACAACATTAACAGTAATTTGGACAAAATATTTGCTCCTCCACCTAAACCATTTGAAAATATTTTTTCACATTTTAAAATTACAGATGACATGGAACAATGGCTAGGGGAGACATTTGAGTTTGATGTTACTTCCCCTGCGGGGCCAATTGTTAATAATGTCATAGGGCATAGACCCAAAAGTCTAATTGTTGAAGGTCCTAGCAGAACCGGAAAAACTGCGTGGGCTAGATCACTAGGTGCCCATAATTATCTATCAGGGCACCTAGATTTCAACAGTAAATGTTTTAGCAACAGTGCGATGTATAATGTCATTGATGACATCACACCGCACTATCTAAAGCTAAAACATTGGAAAGAACTTATTGGGGCCCAAAGAGACTGGCAAAGCAACTGTAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCATCAATCGTGCTCTGCAATCCAGGACCAGAAACATCTTATAAAGAGTTTCTGGACAAGGACGAAAATAGAGCATTGAAAGAGTGGACACTCCAAAATGCCTATTTCATATTCATCACCCAGCCACTCTTCTGA
Protein Sequence MTRPKFLINSKNYFLTFPKCSLSKEEALSQLQNLHTPTNIKFIRICRELHQNGEPHLHVLIQFESKFKCQNNRFFDLRHPHSSIQFHPNIQSAKSSSDCKTYMEKDGDVLDFGVFQIDGRSARGGKQSANDSYAKALNATSKDEAMRIIREEQPQHYVLMFHNINSNLDKIFAPPPKPFENIFSHFKITDDMEQWLGETFEFDVTSPAGPIVNNVIGHRPKSLIVEGPSRTGKTAWARSLGAHNYLSGHLDFNSKCFSNSAMYNVIDDITPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGPETSYKEFLDKDENRALKEWTLQNAYFIFITQPLF

NCBI Accession YP_010087796.1
Location 2446-2643
Gene Name ac4
Protein Name AC4
Coding Region ATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAATCCAAATTCAAGTGCCAAAATAATAGATTCTTCGATCTTCGACACCCCCATTCCTCCATTCAATTCCATCCAAACATTCAATCCGCCAAGTCCTCCTCCGACTGCAAAACTTATATGGAGAAAGACGGAGATGTATTGGATTTTGGAGTTTTCCAAATAG
Protein Sequence MGNLISMCLSNSNPNSSAKIIDSSIFDTPIPPFNSIQTFNPPSPPPTAKLIWRKTEMYWILEFSK

References More References in PubMed

1

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses.

Fontenele RS, et al.  J Gen Virol. 2021 Nov;102(11). doi: 10.1099/jgv.0.001671.

PMID: 34726588

2

New World Cactaceae Plants Harbor Diverse Geminiviruses.

Fontenele RS, et al.  Viruses. 2021 Apr 16;13(4):694. doi: 10.3390/v13040694.

PMID: 33923787

3

An umbra-related virus found in babaco (Vasconcellea × heilbornii).

Cornejo-Franco JF, et al.  Arch Virol. 2021 Aug;166(8):2321-2324. doi: 10.1007/s00705-021-05117-8. Epub 2021 May 27.

PMID: 34046760

4

A Novel Divergent Geminivirus Identified in Asymptomatic New World Cactaceae Plants.

Fontenele RS, et al.  Viruses. 2020 Apr 3;12(4):398. doi: 10.3390/v12040398.

PMID: 32260283

5

Invasive Alien Plants in Africa and the Potential Emergence of Mosquito-Borne Arboviral Diseases-A Review and Research Outlook.

Agha SB, et al.  Viruses. 2020 Dec 27;13(1):32. doi: 10.3390/v13010032.

PMID: 33375455

6

Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life.

Aguado-García Y, et al.  Sci Rep. 2020 Aug 12;10(1):13595. doi: 10.1038/s41598-020-70684-w.

PMID: 32788688

7

Potent virucidal effect of pheophorbide a and pyropheophorbide a on enveloped viruses.

Bouslama L, et al.  J Nat Med. 2011 Jan;65(1):229-33. doi: 10.1007/s11418-010-0468-8. Epub 2010 Sep 11.

PMID: 20835849

8

Antiviral properties of extract of Opuntia streptacantha.

Ahmad A, et al.  Antiviral Res. 1996 May;30(2-3):75-85. doi: 10.1016/0166-3542(95)00839-x.

PMID: 8783800

9

Bioactive anthraquinones from endophytic fungus Aspergillus versicolor isolated from red sea algae.

Hawas UW, et al.  Arch Pharm Res. 2012 Oct;35(10):1749-56. doi: 10.1007/s12272-012-1006-x. Epub 2012 Nov 9.

PMID: 23139125

10

Cactus mild mottle virus is a new cactus-infecting tobamovirus.

Min BE, et al.  Arch Virol. 2006 Jan;151(1):13-21. doi: 10.1007/s00705-005-0617-7. Epub 2005 Aug 23.

PMID: 16132178