Opuntia virus 1
Basic Information
| Genus | Opunvirus |
|---|---|
| NCBI Assembly | GCF_018587595.1 |
| Isolate | USA |
| Release date | 2021/6/1 |
| Submitter | Fontenele,R.S., Schmidlin,K., Majure,L., Salywon,A., Kraberger,S., Wojciechowski,M., Cobb,I., Varsani,A. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_055584
Gene Information
| NCBI Accession | YP_010087791.1 |
|---|---|
| Location | 245-553 |
| Gene Name | mp |
| Protein Name | putative movement protein |
| Coding Region | ATGGATAGGACTGATAGGGGTCAGTTGACTAGACTTGTGTTCAGGTACGGATTTGCTGTGGTGTTGAAGGAGCTGAATACGGAGGCCCTGAATAGTCCGTATTTGTGGGAGCAATTTTGGCATGCAGTCAGGTACACCGAGGAAACGATATGCCGGGATTTTGTCTCCTTCAGGAGGCATAAGGAAGAGTGCGAGAAGGAGGTTGGTGTTTTCTACACCAACAAAAAAGAGTGGCCAGGGGAGCTTGACCCCACGGTTAAGGAGACAACCGCAGCTGCAGACGGTTCACCGGCAGCAGGTGACGGTTGA |
| Protein Sequence | MDRTDRGQLTRLVFRYGFAVVLKELNTEALNSPYLWEQFWHAVRYTEETICRDFVSFRRHKEECEKEVGVFYTNKKEWPGELDPTVKETTAAADGSPAAGDG |
| NCBI Accession | YP_010087792.1 |
|---|---|
| Location | 366-1115 |
| Gene Name | cp |
| Protein Name | capsid protein |
| Coding Region | ATGCAGTCAGGTACACCGAGGAAACGATATGCCGGGATTTTGTCTCCTTCAGGAGGCATAAGGAAGAGTGCGAGAAGGAGGTTGGTGTTTTCTACACCAACAAAAAAGAGTGGCCAGGGGAGCTTGACCCCACGGTTAAGGAGACAACCGCAGCTGCAGACGGTTCACCGGCAGCAGGTGACGGTTGATTGTGATGGGAAGTGTCCGCATGGTTCAATATTGTGCAAGATATTGAATGATATGTCTCTGGGTCAGGATGAGACCCAGAGACATAGTAATAAGGTGAATTTCACTTATGTTAGTATTAGAGGGGAGCTGGATCTGGCTGATGTTCATCAGGATTTGACTGCTTGGTATGGGCAGAAGCAGTATATTTTTTTGTGGTTATTTTTAGATAGGACAGTCAGAGGAGATACGTTTGATATAGGTGACTTTTTTAAGGGATCAATTACTGATCCCGAGCAGTGGTTTGTTAATTCTAATAATAGGGATAGATATATATTGTTGAAGAAGAGGAGGATTATGTTTCAGCTTCCTTGTAAGCAGAAGGATTCTGCGGGTGTTTTTAATTGTATTAGTAGTCATGATAGGTATAAGCCATTTGAGTTTAGGAAGAGGTTAATGTTTCAGAGTCATTGGGATAATACGGGGAAGTTAGTTAGGAATAGGTTGTTGTTGTTAGCGACTGTGGGTAAGGCTGTTGAGATTACTATGAACAGCCAGATGAGATTGTATTTCAATTCAGCATGA |
| Protein Sequence | MQSGTPRKRYAGILSPSGGIRKSARRRLVFSTPTKKSGQGSLTPRLRRQPQLQTVHRQQVTVDCDGKCPHGSILCKILNDMSLGQDETQRHSNKVNFTYVSIRGELDLADVHQDLTAWYGQKQYIFLWLFLDRTVRGDTFDIGDFFKGSITDPEQWFVNSNNRDRYILLKKRRIMFQLPCKQKDSAGVFNCISSHDRYKPFEFRKRLMFQSHWDNTGKLVRNRLLLLATVGKAVEITMNSQMRLYFNSA |
| NCBI Accession | YP_010087793.1 |
|---|---|
| Location | 1116-1514 |
| Gene Name | ren |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCATTTCAAGCAGAGACTGGGACCTTCATATGGAAGGTCCCCAATCCCCTATACATGAAACTGTTATTCACAGGGGACAATTCTCAAGGACAGTTATTCCGCATCCGGATCCAGGCAAACCACAACCTCCGAAAAGAGCTAGGCTTACACAAATGCTGGATCCAGACAGAGATACTTACTACTCTGATTACAGCGACTGGGAGTTCATTCTTGACTAGATTTAAACACCATGTATTTTTTTACTTAAATAATTTAGGTGTTGTAAGCATAAATAATATTGCAAGAGCAATATATTATTTCTTTGATGTATCCAAATATGTATATGAAATCAGAAACACAAAATATGATATAAAATTTCTCCTTTATTAA |
| Protein Sequence | MDSRTGEPITAFQAETGTFIWKVPNPLYMKLLFTGDNSQGQLFRIRIQANHNLRKELGLHKCWIQTEILTTLITATGSSFLTRFKHHVFFYLNNLGVVSINNIARAIYYFFDVSKYVYEIRNTKYDIKFLLY |
| NCBI Accession | YP_010087794.1 |
|---|---|
| Location | 1267-1785 |
| Gene Name | trap |
| Protein Name | transactivator protein |
| Coding Region | ATGCCTATTTCATATTCATCACCCAGCCACTCTTCTGATCCCTCCACTGAAATAAAACCCCTTCCTCCTTCCCCAACTACACCTATTTATAACAACCCCATTCAATCATGCTCTGATCCTGTCCAATGCCACAGAGACAAGTACATTGACTGCCCAGTCCATGACATCAGACTCCAGCATAAGAATGCCAAGAACAAAAGAAGAAGAGAACGAAGAATTGCATTCCACCTGGAATGCAAATGCACATTCCTCTACTCCAAAGCTTGTGGCCATGGATTCACGCACAGGGGAACCCATCACTGCATTTCAAGCAGAGACTGGGACCTTCATATGGAAGGTCCCCAATCCCCTATACATGAAACTGTTATTCACAGGGGACAATTCTCAAGGACAGTTATTCCGCATCCGGATCCAGGCAAACCACAACCTCCGAAAAGAGCTAGGCTTACACAAATGCTGGATCCAGACAGAGATACTTACTACTCTGATTACAGCGACTGGGAGTTCATTCTTGACTAG |
| Protein Sequence | MPISYSSPSHSSDPSTEIKPLPPSPTTPIYNNPIQSCSDPVQCHRDKYIDCPVHDIRLQHKNAKNKRRRERRIAFHLECKCTFLYSKACGHGFTHRGTHHCISSRDWDLHMEGPQSPIHETVIHRGQFSRTVIPHPDPGKPQPPKRARLTQMLDPDRDTYYSDYSDWEFILD |
| NCBI Accession | YP_010087795.1 |
|---|---|
| Location | 1748-2797 |
| Gene Name | rep |
| Protein Name | replication associated protein |
| Coding Region | ATGACAAGACCCAAATTTTTAATTAACTCCAAAAATTATTTCCTCACTTTCCCCAAATGCTCCCTCTCCAAAGAAGAAGCACTCTCCCAACTTCAAAACCTCCACACTCCAACAAACATTAAATTCATCCGAATCTGCCGAGAATTACATCAAAATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAATCCAAATTCAAGTGCCAAAATAATAGATTCTTCGATCTTCGACACCCCCATTCCTCCATTCAATTCCATCCAAACATTCAATCCGCCAAGTCCTCCTCCGACTGCAAAACTTATATGGAGAAAGACGGAGATGTATTGGATTTTGGAGTTTTCCAAATAGACGGCAGATCTGCAAGAGGAGGTAAACAATCTGCCAATGATTCTTATGCAAAAGCACTCAATGCCACATCCAAAGACGAGGCAATGAGAATAATAAGAGAGGAACAACCCCAGCATTACGTGTTAATGTTTCACAACATTAACAGTAATTTGGACAAAATATTTGCTCCTCCACCTAAACCATTTGAAAATATTTTTTCACATTTTAAAATTACAGATGACATGGAACAATGGCTAGGGGAGACATTTGAGTTTGATGTTACTTCCCCTGCGGGGCCAATTGTTAATAATGTCATAGGGCATAGACCCAAAAGTCTAATTGTTGAAGGTCCTAGCAGAACCGGAAAAACTGCGTGGGCTAGATCACTAGGTGCCCATAATTATCTATCAGGGCACCTAGATTTCAACAGTAAATGTTTTAGCAACAGTGCGATGTATAATGTCATTGATGACATCACACCGCACTATCTAAAGCTAAAACATTGGAAAGAACTTATTGGGGCCCAAAGAGACTGGCAAAGCAACTGTAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCATCAATCGTGCTCTGCAATCCAGGACCAGAAACATCTTATAAAGAGTTTCTGGACAAGGACGAAAATAGAGCATTGAAAGAGTGGACACTCCAAAATGCCTATTTCATATTCATCACCCAGCCACTCTTCTGA |
| Protein Sequence | MTRPKFLINSKNYFLTFPKCSLSKEEALSQLQNLHTPTNIKFIRICRELHQNGEPHLHVLIQFESKFKCQNNRFFDLRHPHSSIQFHPNIQSAKSSSDCKTYMEKDGDVLDFGVFQIDGRSARGGKQSANDSYAKALNATSKDEAMRIIREEQPQHYVLMFHNINSNLDKIFAPPPKPFENIFSHFKITDDMEQWLGETFEFDVTSPAGPIVNNVIGHRPKSLIVEGPSRTGKTAWARSLGAHNYLSGHLDFNSKCFSNSAMYNVIDDITPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGPETSYKEFLDKDENRALKEWTLQNAYFIFITQPLF |
| NCBI Accession | YP_010087796.1 |
|---|---|
| Location | 2446-2643 |
| Gene Name | ac4 |
| Protein Name | AC4 |
| Coding Region | ATGGGGAACCTCATCTCCATGTGCTTATCCAATTCGAATCCAAATTCAAGTGCCAAAATAATAGATTCTTCGATCTTCGACACCCCCATTCCTCCATTCAATTCCATCCAAACATTCAATCCGCCAAGTCCTCCTCCGACTGCAAAACTTATATGGAGAAAGACGGAGATGTATTGGATTTTGGAGTTTTCCAAATAG |
| Protein Sequence | MGNLISMCLSNSNPNSSAKIIDSSIFDTPIPPFNSIQTFNPPSPPPTAKLIWRKTEMYWILEFSK |
References More References in PubMed
| 1 |
Fontenele RS, et al. J Gen Virol. 2021 Nov;102(11). doi: 10.1099/jgv.0.001671. PMID: 34726588 |
|---|---|
| 2 |
High-Throughput Sequencing Reveals New Viroid Species in Opuntia in Mexico. Ortega-Acosta C, et al. Viruses. 2024 Jul 23;16(8):1177. doi: 10.3390/v16081177. PMID: 39205151 |
| 3 |
New World Cactaceae Plants Harbor Diverse Geminiviruses. Fontenele RS, et al. Viruses. 2021 Apr 16;13(4):694. doi: 10.3390/v13040694. PMID: 33923787 |
| 4 |
Aguado-García Y, et al. Sci Rep. 2020 Aug 12;10(1):13595. doi: 10.1038/s41598-020-70684-w. PMID: 32788688 |
| 5 |
Potent virucidal effect of pheophorbide a and pyropheophorbide a on enveloped viruses. Bouslama L, et al. J Nat Med. 2011 Jan;65(1):229-33. doi: 10.1007/s11418-010-0468-8. Epub 2010 Sep 11. PMID: 20835849 |
| 6 |
Agha SB, et al. Viruses. 2020 Dec 27;13(1):32. doi: 10.3390/v13010032. PMID: 33375455 |
| 7 |
An umbra-related virus found in babaco (Vasconcellea heilbornii). Cornejo-Franco JF, et al. Arch Virol. 2021 Aug;166(8):2321-2324. doi: 10.1007/s00705-021-05117-8. Epub 2021 May 27. PMID: 34046760 |
| 8 |
A Novel Divergent Geminivirus Identified in Asymptomatic New World Cactaceae Plants. Fontenele RS, et al. Viruses. 2020 Apr 3;12(4):398. doi: 10.3390/v12040398. PMID: 32260283 |
| 9 |
Cactus mild mottle virus is a new cactus-infecting tobamovirus. Min BE, et al. Arch Virol. 2006 Jan;151(1):13-21. doi: 10.1007/s00705-005-0617-7. Epub 2005 Aug 23. PMID: 16132178 |
| 10 |
Antiviral properties of extract of Opuntia streptacantha. Ahmad A, et al. Antiviral Res. 1996 May;30(2-3):75-85. doi: 10.1016/0166-3542(95)00839-x. PMID: 8783800 |