Wheat dwarf virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_000865525.1 |
| Isolate | Sweden |
| Release date | 2015/2/13 |
| Submitter | Kvarnheden,A., Lindblad,M., Lindsten,K., Valkonen,J.P. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_003326
Gene Information
| NCBI Accession | NP_542347.1 |
|---|---|
| Location | 171-443 |
| Gene Name | v1 |
| Protein Name | Movement protein |
| Coding Region | ATGGAGCAGGCAATAGCCCCCCCGCTTCCTATACGGGACTATCAATACCAGACCCCTTCCAATCCCGGTTCCTCCGACTACGCCTGGCGAACATTTGTGTTCGTTACCTTCGGTTTGTTAATAGCCGTAGGCGTTGCTTGGCTTGCTTACACTCTGTTTCTGAAAGATTTAATTTTAGTGTGTAAGGCGAAGAAGCAAAGGAGGACCGAGGAAATTGGTTACGGGAATACACCGGCCAGATTAAATGGTGACCAACAAGGACTCCCGAGGTAA |
| Protein Sequence | MEQAIAPPLPIRDYQYQTPSNPGSSDYAWRTFVFVTFGLLIAVGVAWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR |
| NCBI Accession | NP_542348.1 |
|---|---|
| Location | 415-1197 |
| Gene Name | v2 |
| Protein Name | Coat protein |
| Coding Region | ATGGTGACCAACAAGGACTCCCGAGGTAAGGGGAAACGTAAGCTCGAAGAGGGAGAATCCAGCGGAAGGTGGAAGGGGGCTGTGTATAAGCGGCGTAAACAGACGTATAAGGTAGTACCTGTGAAGCCCCCAGCTCTCTGCGTATTCCGCTACAACTGGTTGAATAGCGACAGGACCAATATTGTTGTGGGTAATACACCCCGGGTCGATCTGATTACCTGTTTTGCTCAGGGTAAGGCCGATAATAATCGGCATACAAATCAGACCGTCCTATACAAATTTAACATACAGGGTACCTGCTATATGTCCGATGCATCAGCTCCGTTCATCGGTCCAGTCCGCCTCTACCACTGGTTAGTCTATGATGCAGAGCCGAAACAGGCAATGCCAGACGCCACTGACATCTTTACGATGCCTTGGAATCTGCTGCCGAGTACGTGGACTGTGCAACGTGCTTGGTCGCATCGATTCGTGGTGAAAAGGAAGTGGACCGTGAACCTTGTTACTGATGGACGGAAGGTCGGGTCTAAGACCGTTGACCAACGCTACAACTGGGTAGTCGGCAAGAATATCGTGGACGCGAACAAGTTCTTCAAAGGTTTGCGTGTCACGACGGAGTGGATGAACACGGGTGACGGCAAGATAGGCGACATTAAGAAGGGAGCACTGTATCTCATAAGCAGTACTCGTGGTGGTGTTACTGGTGACAGTGCCTCTACGGCGTTTGATGTTGTATGTGCCTATACGCACGCGTGTTATTTCAAAGCCATCGGCATTCAGTAA |
| Protein Sequence | MVTNKDSRGKGKRKLEEGESSGRWKGAVYKRRKQTYKVVPVKPPALCVFRYNWLNSDRTNIVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFNIQGTCYMSDASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSHRFVVKRKWTVNLVTDGRKVGSKTVDQRYNWVVGKNIVDANKFFKGLRVTTEWMNTGDGKIGDIKKGALYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ |
| NCBI Accession | NP_542349.1 |
|---|---|
| Location | 1370-1795,1882-2511 |
| Gene Name | rep |
| Protein Name | Replication-associated protein |
| Coding Region | ATGGCCTCTTCATCTGCACCCAGGTTCCGTGTCTATTCCAAGTACCTCTTTCTAACATATCCTCAATGTACCCTTGAGCCACAGTACGCCTTGGATTCACTTCGCACTCTCTTGAACAAATATGAGCCCCTCTACATCGCTGCTGTTAGAGAGCTCCACGAAGATGGATCACCACATCTGCACGTTCTCGTGCAGAACAAGCTTCGTGCTTCCATCACCAATCCCAATGCCTTAAACCTCCGTATGGATACATCTCCATTCTCCATATTCCATCCAAATATACAAGCTGCCAAAGACTGCAACCAAGTTCGTGATTACATCACGAAGGAGGTTGACTCCGATGCAAACACAGCTGAGTGGGGAACATTCGTGGCAGTTTCAACTCCAGGTCGTAAAGACCGTGATGCGGATATGAAACAGATCATTGAATCTAGTTCCTCTCGCGAGGAATTCCTCAGCATGGTTTGCAATCGTTTTCCGTTTGAATGGTCTATCCGTCTCAAAGACTTCGAGTACACGGCACGCCATCTATTTCCTGACCCAGTTGCCACTTACACACCTGAGTTTCCAACCGAATCACTCATTTGCCATGAGACCATTGAAAGCTGGAAAAATGAACATCTCTACTCCGAGTCACCGGGGAGGCATAAGTCCATCTACATCTGCGGGCCAACCAGAACAGGAAAGACTTCCTGGGCAAGGTCTCTAGGGACACACAATTATTATAACAGTCTAGTTGATTTCACAACATATGACGTCAACGCCAAGTATAATATCATCGACGACATTCCATTCAAGTTCACACCGAACTGGAAGTGCTTCGTCGGGGCTCAGCGTGACTTCACGGTCAATCCAAAATATGGTAAGCGAAAAGTCATACGGGGTGGAATACCTTGCATCATTTTAGTTAATCCAGACGAAGATTGGCTCAAGGATATGACTCCCGAACAGTCGGATTACATGTACTCTAACGCTGTTGTTCACTACATGTATGAAGGCGAGTCTTTCATCAACTACTCGTTCGCCTCCGGCGAAGATGTCACTGCTTCGCAGTGA |
| Protein Sequence | MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEWSIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYICGPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDFTVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGESFINYSFASGEDVTASQ |
| NCBI Accession | NP_542350.1 |
|---|---|
| Location | 1717-2511 |
| Gene Name | repA |
| Protein Name | Replication-associated protein A |
| Coding Region | ATGGCCTCTTCATCTGCACCCAGGTTCCGTGTCTATTCCAAGTACCTCTTTCTAACATATCCTCAATGTACCCTTGAGCCACAGTACGCCTTGGATTCACTTCGCACTCTCTTGAACAAATATGAGCCCCTCTACATCGCTGCTGTTAGAGAGCTCCACGAAGATGGATCACCACATCTGCACGTTCTCGTGCAGAACAAGCTTCGTGCTTCCATCACCAATCCCAATGCCTTAAACCTCCGTATGGATACATCTCCATTCTCCATATTCCATCCAAATATACAAGCTGCCAAAGACTGCAACCAAGTTCGTGATTACATCACGAAGGAGGTTGACTCCGATGCAAACACAGCTGAGTGGGGAACATTCGTGGCAGTTTCAACTCCAGGTCGTAAAGACCGTGATGCGGATATGAAACAGATCATTGAATCTAGTTCCTCTCGCGAGGAATTCCTCAGCATGGTTTGCAATCGTTTTCCGTTTGAATGGTCTATCCGTCTCAAAGACTTCGAGTACACGGCACGCCATCTATTTCCTGACCCAGTTGCCACTTACACACCTGAGTTTCCAACCGAATCACTCATTTGCCATGAGACCATTGAAAGCTGGAAAAATGAACATCTCTACTCCGTAAGCCTCGAATCCTATATCATTTGTACTTCCACTCCTGCGGATCAAGCGCAATCTGACTTAGAGTGGATGGACGATTATTCCAGGAGTCACCGGGGAGGCATAAGTCCATCTACATCTGCGGGCCAACCAGAACAGGAAAGACTTCCTGGGCAAGGTCTCTAG |
| Protein Sequence | MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEWSIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYIICTSTPADQAQSDLEWMDDYSRSHRGGISPSTSAGQPEQERLPGQGL |
References More References in PubMed
| 1 |
The Past, Present, and Future of Wheat Dwarf Virus Management-A Review. Pfrieme AK, et al. Plants (Basel). 2023 Oct 20;12(20):3633. doi: 10.3390/plants12203633. PMID: 37896096 |
|---|---|
| 2 |
Functional Transcomplementation between Wheat Dwarf Virus Strains in Wheat and Barley. Abt I, et al. Viruses. 2019 Dec 28;12(1):34. doi: 10.3390/v12010034. PMID: 31905671 |
| 3 |
Asymmetric interactions between barley yellow dwarf virus -PAV and wheat dwarf virus in wheat. Armand T, et al. Front Plant Sci. 2023 Jul 11;14:1194622. doi: 10.3389/fpls.2023.1194622. eCollection 2023. PMID: 37496861 |
| 4 |
CRISPR/Cas9-Mediated Resistance to Wheat Dwarf Virus in Hexaploid Wheat (Triticum aestivum L.). Yuan X, et al. Viruses. 2024 Aug 29;16(9):1382. doi: 10.3390/v16091382. PMID: 39339858 |
| 5 |
Crystal structure of the Wheat dwarf virus Rep domain. Everett BA, et al. Acta Crystallogr F Struct Biol Commun. 2019 Dec 1;75(Pt 12):744-749. doi: 10.1107/S2053230X19015796. Epub 2019 Nov 27. PMID: 31797816 |
| 6 |
Phylogenetic analysis of Wheat dwarf virus isolates from Iran. Parizipour MH, et al. Virus Genes. 2017 Apr;53(2):266-274. doi: 10.1007/s11262-016-1412-0. Epub 2016 Nov 30. PMID: 27900587 |
| 7 |
Monoclonal Antibody-Based Serological Detection Methods for Wheat Dwarf Virus. Zhang M, et al. Virol Sin. 2018 Apr;33(2):173-180. doi: 10.1007/s12250-018-0024-3. Epub 2018 Apr 9. PMID: 29633082 |
| 8 |
Identification of Subgenomic DNAs Associated with Wheat Dwarf Virus Infection in Iran. Ghodoum Parizipour MH, et al. Iran J Biotechnol. 2020 Oct 1;18(4):e2472. doi: 10.30498/IJB.2020.2472. eCollection 2020 Oct. PMID: 34056018 |
| 9 |
Pfrieme AK, et al. Front Plant Sci. 2022 Apr 14;13:828639. doi: 10.3389/fpls.2022.828639. eCollection 2022. PMID: 35498699 |
| 10 |
A new geminialphasatellite associated with wheat dwarf virus identified in winter barley in France. Huang A, et al. Arch Virol. 2024 Jul 10;169(8):162. doi: 10.1007/s00705-024-06090-8. PMID: 38985350 |