Wheat dwarf virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000865525.1 |
| Isolate |
Sweden |
| Release date |
2015/2/13 |
| Submitter |
Kvarnheden,A., Lindblad,M., Lindsten,K., Valkonen,J.P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCCGCGTGGTGGCCCCCGACGCGCACTCGGCTTTTCGTGAGTGCGCGGAGGCTTTTGGACCACATCTTTTCTGATCACTTTCGTGGAAGATGTTGATTTATCACACTTTTGACTTGGAAATCTGTGCCATGCCTTAGCTTATAAGGAAGTGCGCGGTAGCCCATCTCGATGGAGCAGGCAATAGCCCCCCCGCTTCCTATACGGGACTATCAATACCAGACCCCTTCCAATCCCGGTTCCTCCGACTACGCCTGGCGAACATTTGTGTTCGTTACCTTCGGTTTGTTAATAGCCGTAGGCGTTGCTTGGCTTGCTTACACTCTGTTTCTGAAAGATTTAATTTTAGTGTGTAAGGCGAAGAAGCAAAGGAGGACCGAGGAAATTGGTTACGGGAATACACCGGCCAGATTAAATGGTGACCAACAAGGACTCCCGAGGTAAGGGGAAACGTAAGCTCGAAGAGGGAGAATCCAGCGGAAGGTGGAAGGGGGCTGTGTATAAGCGGCGTAAACAGACGTATAAGGTAGTACCTGTGAAGCCCCCAGCTCTCTGCGTATTCCGCTACAACTGGTTGAATAGCGACAGGACCAATATTGTTGTGGGTAATACACCCCGGGTCGATCTGATTACCTGTTTTGCTCAGGGTAAGGCCGATAATAATCGGCATACAAATCAGACCGTCCTATACAAATTTAACATACAGGGTACCTGCTATATGTCCGATGCATCAGCTCCGTTCATCGGTCCAGTCCGCCTCTACCACTGGTTAGTCTATGATGCAGAGCCGAAACAGGCAATGCCAGACGCCACTGACATCTTTACGATGCCTTGGAATCTGCTGCCGAGTACGTGGACTGTGCAACGTGCTTGGTCGCATCGATTCGTGGTGAAAAGGAAGTGGACCGTGAACCTTGTTACTGATGGACGGAAGGTCGGGTCTAAGACCGTTGACCAACGCTACAACTGGGTAGTCGGCAAGAATATCGTGGACGCGAACAAGTTCTTCAAAGGTTTGCGTGTCACGACGGAGTGGATGAACACGGGTGACGGCAAGATAGGCGACATTAAGAAGGGAGCACTGTATCTCATAAGCAGTACTCGTGGTGGTGTTACTGGTGACAGTGCCTCTACGGCGTTTGATGTTGTATGTGCCTATACGCACGCGTGTTATTTCAAAGCCATCGGCATTCAGTAATAAAATAATATTTTATTTATCTCATGTCATTCGATTACAGAGGCTCGGCTACGAGCAAAGACAAACCAAATTATAACAAAAAACAACCCTTACACAATGACATCGGAAAACGAAATACAACACCCTGAGATATTACATTTATAGAAACTGTACGCCGTCCGCGCTAGGACAGTCACTGCGAAGCAGTGACATCTTCGCCGGAGGCGAACGAGTAGTTGATGAAAGACTCGCCTTCATACATGTAGTGAACAACAGCGTTAGAGTACATGTAATCCGACTGTTCGGGAGTCATATCCTTGAGCCAATCTTCGTCTGGATTAACTAAAATGATGCAAGGTATTCCACCCCGTATGACTTTTCGCTTACCATATTTTGGATTGACCGTGAAGTCACGCTGAGCCCCGACGAAGCACTTCCAGTTCGGTGTGAACTTGAATGGAATGTCGTCGATGATATTATACTTGGCGTTGACGTCATATGTTGTGAAATCAACTAGACTGTTATAATAATTGTGTGTCCCTAGAGACCTTGCCCAGGAAGTCTTTCCTGTTCTGGTTGGCCCGCAGATGTAGATGGACTTATGCCTCCCCGGTGACTCCTGGAATAATCGTCCATCCACTCTAAGTCAGATTGCGCTTGATCCGCAGGAGTGGAAGTACAAATGATATAGGATTCGAGGCTTACGGAGTAGAGATGTTCATTTTTCCAGCTTTCAATGGTCTCATGGCAAATGAGTGATTCGGTTGGAAACTCAGGTGTGTAAGTGGCAACTGGGTCAGGAAATAGATGGCGTGCCGTGTACTCGAAGTCTTTGAGACGGATAGACCATTCAAACGGAAAACGATTGCAAACCATGCTGAGGAATTCCTCGCGAGAGGAACTAGATTCAATGATCTGTTTCATATCCGCATCACGGTCTTTACGACCTGGAGTTGAAACTGCCACGAATGTTCCCCACTCAGCTGTGTTTGCATCGGAGTCAACCTCCTTCGTGATGTAATCACGAACTTGGTTGCAGTCTTTGGCAGCTTGTATATTTGGATGGAATATGGAGAATGGAGATGTATCCATACGGAGGTTTAAGGCATTGGGATTGGTGATGGAAGCACGAAGCTTGTTCTGCACGAGAACGTGCAGATGTGGTGATCCATCTTCGTGGAGCTCTCTAACAGCAGCGATGTAGAGGGGCTCATATTTGTTCAAGAGAGTGCGAAGTGAATCCAAGGCGTACTGTGGCTCAAGGGTACATTGAGGATATGTTAGAAAGAGGTACTTGGAATAGACACGGAACCTGGGTGCAGATGAAGAGGCCATGGTAGTGAACAGAAGTCCGGCAGGTCCTTAGCGAAAAAACGGGGTGTGCCAGAAAACTCTATGCTCTACCCTGCGTGGAGGTGTGAATTCTGCACACTGCAAATGCAATGTGTCCAATGCTTTATATAGGGCAGGTTTTGGCGGGAGAACAGGGCCCTTGTGTTCCCACGGGAGCGTAGCGTATCGTGTGGGCCCTGTTCGGTGTGTGGTCGGGGGGCCTCCACGCGGGTTATAATATT
Gene Information
|
NCBI Accession
|
NP_542347.1
|
|
Location
|
171-443 |
|
Gene Name
|
v1 |
|
Protein Name
|
Movement protein |
|
Coding Region
|
ATGGAGCAGGCAATAGCCCCCCCGCTTCCTATACGGGACTATCAATACCAGACCCCTTCCAATCCCGGTTCCTCCGACTACGCCTGGCGAACATTTGTGTTCGTTACCTTCGGTTTGTTAATAGCCGTAGGCGTTGCTTGGCTTGCTTACACTCTGTTTCTGAAAGATTTAATTTTAGTGTGTAAGGCGAAGAAGCAAAGGAGGACCGAGGAAATTGGTTACGGGAATACACCGGCCAGATTAAATGGTGACCAACAAGGACTCCCGAGGTAA |
|
Protein Sequence
|
MEQAIAPPLPIRDYQYQTPSNPGSSDYAWRTFVFVTFGLLIAVGVAWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR |
|
NCBI Accession
|
NP_542348.1
|
|
Location
|
415-1197 |
|
Gene Name
|
v2 |
|
Protein Name
|
Coat protein |
|
Coding Region
|
ATGGTGACCAACAAGGACTCCCGAGGTAAGGGGAAACGTAAGCTCGAAGAGGGAGAATCCAGCGGAAGGTGGAAGGGGGCTGTGTATAAGCGGCGTAAACAGACGTATAAGGTAGTACCTGTGAAGCCCCCAGCTCTCTGCGTATTCCGCTACAACTGGTTGAATAGCGACAGGACCAATATTGTTGTGGGTAATACACCCCGGGTCGATCTGATTACCTGTTTTGCTCAGGGTAAGGCCGATAATAATCGGCATACAAATCAGACCGTCCTATACAAATTTAACATACAGGGTACCTGCTATATGTCCGATGCATCAGCTCCGTTCATCGGTCCAGTCCGCCTCTACCACTGGTTAGTCTATGATGCAGAGCCGAAACAGGCAATGCCAGACGCCACTGACATCTTTACGATGCCTTGGAATCTGCTGCCGAGTACGTGGACTGTGCAACGTGCTTGGTCGCATCGATTCGTGGTGAAAAGGAAGTGGACCGTGAACCTTGTTACTGATGGACGGAAGGTCGGGTCTAAGACCGTTGACCAACGCTACAACTGGGTAGTCGGCAAGAATATCGTGGACGCGAACAAGTTCTTCAAAGGTTTGCGTGTCACGACGGAGTGGATGAACACGGGTGACGGCAAGATAGGCGACATTAAGAAGGGAGCACTGTATCTCATAAGCAGTACTCGTGGTGGTGTTACTGGTGACAGTGCCTCTACGGCGTTTGATGTTGTATGTGCCTATACGCACGCGTGTTATTTCAAAGCCATCGGCATTCAGTAA |
|
Protein Sequence
|
MVTNKDSRGKGKRKLEEGESSGRWKGAVYKRRKQTYKVVPVKPPALCVFRYNWLNSDRTNIVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFNIQGTCYMSDASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSHRFVVKRKWTVNLVTDGRKVGSKTVDQRYNWVVGKNIVDANKFFKGLRVTTEWMNTGDGKIGDIKKGALYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ |
|
NCBI Accession
|
NP_542349.1
|
|
Location
|
1370-1795,1882-2511 |
|
Gene Name
|
rep |
|
Protein Name
|
Replication-associated protein |
|
Coding Region
|
ATGGCCTCTTCATCTGCACCCAGGTTCCGTGTCTATTCCAAGTACCTCTTTCTAACATATCCTCAATGTACCCTTGAGCCACAGTACGCCTTGGATTCACTTCGCACTCTCTTGAACAAATATGAGCCCCTCTACATCGCTGCTGTTAGAGAGCTCCACGAAGATGGATCACCACATCTGCACGTTCTCGTGCAGAACAAGCTTCGTGCTTCCATCACCAATCCCAATGCCTTAAACCTCCGTATGGATACATCTCCATTCTCCATATTCCATCCAAATATACAAGCTGCCAAAGACTGCAACCAAGTTCGTGATTACATCACGAAGGAGGTTGACTCCGATGCAAACACAGCTGAGTGGGGAACATTCGTGGCAGTTTCAACTCCAGGTCGTAAAGACCGTGATGCGGATATGAAACAGATCATTGAATCTAGTTCCTCTCGCGAGGAATTCCTCAGCATGGTTTGCAATCGTTTTCCGTTTGAATGGTCTATCCGTCTCAAAGACTTCGAGTACACGGCACGCCATCTATTTCCTGACCCAGTTGCCACTTACACACCTGAGTTTCCAACCGAATCACTCATTTGCCATGAGACCATTGAAAGCTGGAAAAATGAACATCTCTACTCCGAGTCACCGGGGAGGCATAAGTCCATCTACATCTGCGGGCCAACCAGAACAGGAAAGACTTCCTGGGCAAGGTCTCTAGGGACACACAATTATTATAACAGTCTAGTTGATTTCACAACATATGACGTCAACGCCAAGTATAATATCATCGACGACATTCCATTCAAGTTCACACCGAACTGGAAGTGCTTCGTCGGGGCTCAGCGTGACTTCACGGTCAATCCAAAATATGGTAAGCGAAAAGTCATACGGGGTGGAATACCTTGCATCATTTTAGTTAATCCAGACGAAGATTGGCTCAAGGATATGACTCCCGAACAGTCGGATTACATGTACTCTAACGCTGTTGTTCACTACATGTATGAAGGCGAGTCTTTCATCAACTACTCGTTCGCCTCCGGCGAAGATGTCACTGCTTCGCAGTGA |
|
Protein Sequence
|
MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEWSIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYICGPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDFTVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGESFINYSFASGEDVTASQ |
|
NCBI Accession
|
NP_542350.1
|
|
Location
|
1717-2511 |
|
Gene Name
|
repA |
|
Protein Name
|
Replication-associated protein A |
|
Coding Region
|
ATGGCCTCTTCATCTGCACCCAGGTTCCGTGTCTATTCCAAGTACCTCTTTCTAACATATCCTCAATGTACCCTTGAGCCACAGTACGCCTTGGATTCACTTCGCACTCTCTTGAACAAATATGAGCCCCTCTACATCGCTGCTGTTAGAGAGCTCCACGAAGATGGATCACCACATCTGCACGTTCTCGTGCAGAACAAGCTTCGTGCTTCCATCACCAATCCCAATGCCTTAAACCTCCGTATGGATACATCTCCATTCTCCATATTCCATCCAAATATACAAGCTGCCAAAGACTGCAACCAAGTTCGTGATTACATCACGAAGGAGGTTGACTCCGATGCAAACACAGCTGAGTGGGGAACATTCGTGGCAGTTTCAACTCCAGGTCGTAAAGACCGTGATGCGGATATGAAACAGATCATTGAATCTAGTTCCTCTCGCGAGGAATTCCTCAGCATGGTTTGCAATCGTTTTCCGTTTGAATGGTCTATCCGTCTCAAAGACTTCGAGTACACGGCACGCCATCTATTTCCTGACCCAGTTGCCACTTACACACCTGAGTTTCCAACCGAATCACTCATTTGCCATGAGACCATTGAAAGCTGGAAAAATGAACATCTCTACTCCGTAAGCCTCGAATCCTATATCATTTGTACTTCCACTCCTGCGGATCAAGCGCAATCTGACTTAGAGTGGATGGACGATTATTCCAGGAGTCACCGGGGAGGCATAAGTCCATCTACATCTGCGGGCCAACCAGAACAGGAAAGACTTCCTGGGCAAGGTCTCTAG |
|
Protein Sequence
|
MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEWSIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYIICTSTPADQAQSDLEWMDDYSRSHRGGISPSTSAGQPEQERLPGQGL |