Wheat dwarf India virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000894555.1 |
| Isolate |
India |
| Release date |
2015/2/22 |
| Submitter |
Kumar,J., Singh,S.P., Tuli,R. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCGCGTCGCCCGTAGCATCGCGACGTGGAACGTGGGCCTCTACGTGACACGGAGCCGCATTAATTAAAGTAAAGATGCCCGGTCGCTGTCAGCTTTAATTGGTAGATGGTGCGTCATTTTCCCGGCCCGCGCTGCCTTTCCTTTATAAAGAGGTGACTCGGAGGTGACTTCGATGGGGTCTGCTCGTCTAGGTGAGTTCTCTCCGCTTGCTTACCCTGGAAGCATCGCATATATCCCCCAATCTCCTCCCGCAGTTCAGAACGAGGACCCGTGGATCCGCCTGGTCTTCGTTTTTGTAGCGGTAATTGCTGCAATCGGTTTGCTTTATCTGAGTTACCGCTGGTTCGTCAGGGATGTCATCATACTCCTTCGGGCGAAGAGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGCTCGGCCCGACGGTGGACAGCCTAGCACCAGACGAGGACCTGATCCCTCGGCTGCTGCACCTCCTTACTGAGGCCAGGCTTCTTGTTCAGGAGCTTGCCGACGGATCCCTAACCGATGTCTCAGGTGAAGAAGAGGACCCGTCGGGGGGACGAAGTGGAGTGGTCAAAGCGCAAGCGGTTGAGGTCGTCCGGGTCGAAAGGATCGGCGACCAAGCTTAGGAAGCTCCCGGTGAGGCCCAGTCTGCAGATTCAGTCGCTGTACTATACGCTCACCACCTATGTAGACTTCAAGACAGGTGGTGAAAGTTATCTGATGGCCTCTTACGCCCGTGGTTCCGACGAAGGTGAGAGGCATACTAACGAGACTATGACGTATAAGGCAGCCCTGAACCTACATCTGTCTGCCTCCTCGGATGCTTGTAAATATTCTAATACAGGCACAGGCTGCATCTGGTTGATTTACGATGCACAGCCCACGGGAAATAAACCGTCTCCGAAGGACATCTTCGGGTACTCGGACAGCCTCAACTCCTGGCCAACAACATGGATGGTTTCTCGGGAGCAGTGCCATCGTTTCGTCGTTAAGAGGCGATGGACGTTCACCCTGGAGACTAACGGGAGGCTCGCATCTGATGTTCCTCCTTCGAACGTCGTCTGGCCTCCGTGCAAGAAGAGCATTAACTTCCACAAGTTCGCCAAGGGTCTGGGTGTGCGTACTGAGTGGAAGAATAAAACAGACGGGGGGATTGGCTCGATCAAAAAAGGTGCCTTGTACTTTGTAATAGCTCCGGGTAACGGAGTAGAGGGACGGATGTTTGGTACGATCCGTATGTACTTCAAGAGTATCGGTAACCAGTAAAGGTTGCTCATATATGTAATAAACCATATTTTATTAATAAAATGGCCATGCTTACAAGAAAAAACACACATACAATACAGGGTGGACAGGACAAAGGCGGGCGGATAAGGGTGGCCGCAAGGGGCAAAACATTAAAAAAAAACACACTCTGTTAAACAATTTCGGCCCCGCCGAAGAACTTCTCCGTTGGTTCCATCATGTAAATGATGGAATTGGCTTCGAAGTACTCCTGTTGTTCCGGGGTCATTGTCTTCAGCCAATCCTCATCGCTGTTAACGAGGATGATTGAGGGGATGCCTCCTTTTATTAACTTCTTCTTACCGTACTTAGGGTTTACGGTGAAGTCCCTCTGGGCCGCTACCAACTGTTTCCAGCAAGGGCAGAATTTAAATGGAATGTCGTCGATTATGTTATATGCCGCTTCTGGATCGTAGACTGTAAAGTCTACATTATTCTGCCAGTAGTTGTGTCGGCCCAGGGACCTTGCCCATGTAGATTTTCCGGTCCTTGTTGGACCGACGATGTAGAGGCTCTTTGGCCTTGTTCCTGCAGATGGATCCTGGAATTTTCCTGCAACCATGTCAGTTCTTGTACAGCCTCTGCTACGCTGTTTATGGTTGGTGTGTTTAGCATATAACAATAAGGGTGTACCTGGAAAAGGTTAGAATCTATCCAGTCTTGGATAGTTTCGTAGCAGTAGAGGTCTGGTACAGATTGGCCGTGGGGATTGCTGTACTCTGGTTGTTGTTCAGGGAAGAGCTTCGAGGCACTATACTCGAAGTTGTATAGTTTAGTGGCCCAGTCATATGGGAAGTTTCTTCTGACTTTACTTAGGTAGTCAGACTTGTTGGTGGAGTTCTCTATGATATCTTTCATGATATCATCTCTGGATCGTTTATTGGAATGCCTAGGACTGGTTCCTGCATTTCTCCCTCTGGGGATAAATGCTCCCTTCTCGCTAAAAGTAATTGGACCCTTAAGGATGTAATCTCGGCATAATGTTGGGTTCTTTGCAGCTTGTATGTGAGGATGATGACCATCAAAATCAAAGAAATGAGGATCATTGGTAGAAATTTGCTTGCGAGTCTGTAGGAGAGCATGGAGATGAGGTGTACCATCCTGGTGTAGTTCGACAGAAGCAACAGCATAGATAGGACTCCAAGTAGAAATGAGGTCCCAGAAGTGTTGAACCATTCCATATGGGCAGGAATTACAGTGGGGAAATGTAAGAAAGCAGTTATTACTGCGGTACCTGAAGGTTGAAGACGAGGCTTTGGGGTTAGCCGAGTTGTTCTCAGCGGAAGTCTGAGACATAGCGTGTCTGATGCTAACACTCTCTGGGACTTAGCCGCGTTTCCGTCGGCTCGAGTTTTATCGATACTCTCTCGATGCGCGATCTTCCCAGCGCTGCGGCGGGGTTTTTATAATGGTTTCCGATCTGACACCTGGGACCAGGGGGGCCCAGGAGCGATGGCGAAGGGCGCGCGCGGCAATAATATT
Gene Information
|
NCBI Accession
|
YP_006273068.1
|
|
Location
|
175-495 |
|
Gene Name
|
V1 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGGGTCTGCTCGTCTAGGTGAGTTCTCTCCGCTTGCTTACCCTGGAAGCATCGCATATATCCCCCAATCTCCTCCCGCAGTTCAGAACGAGGACCCGTGGATCCGCCTGGTCTTCGTTTTTGTAGCGGTAATTGCTGCAATCGGTTTGCTTTATCTGAGTTACCGCTGGTTCGTCAGGGATGTCATCATACTCCTTCGGGCGAAGAGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGCTCGGCCCGACGGTGGACAGCCTAGCACCAGACGAGGACCTGATCCCTCGGCTGCTGCACCTCCTTACTGA |
|
Protein Sequence
|
MGSARLGEFSPLAYPGSIAYIPQSPPAVQNEDPWIRLVFVFVAVIAAIGLLYLSYRWFVRDVIILLRAKRQRSTEEIGFGNTPARPDGGQPSTRRGPDPSAAAPPY |
|
NCBI Accession
|
YP_006273069.1
|
|
Location
|
540-1283 |
|
Gene Name
|
V2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCTCAGGTGAAGAAGAGGACCCGTCGGGGGGACGAAGTGGAGTGGTCAAAGCGCAAGCGGTTGAGGTCGTCCGGGTCGAAAGGATCGGCGACCAAGCTTAGGAAGCTCCCGGTGAGGCCCAGTCTGCAGATTCAGTCGCTGTACTATACGCTCACCACCTATGTAGACTTCAAGACAGGTGGTGAAAGTTATCTGATGGCCTCTTACGCCCGTGGTTCCGACGAAGGTGAGAGGCATACTAACGAGACTATGACGTATAAGGCAGCCCTGAACCTACATCTGTCTGCCTCCTCGGATGCTTGTAAATATTCTAATACAGGCACAGGCTGCATCTGGTTGATTTACGATGCACAGCCCACGGGAAATAAACCGTCTCCGAAGGACATCTTCGGGTACTCGGACAGCCTCAACTCCTGGCCAACAACATGGATGGTTTCTCGGGAGCAGTGCCATCGTTTCGTCGTTAAGAGGCGATGGACGTTCACCCTGGAGACTAACGGGAGGCTCGCATCTGATGTTCCTCCTTCGAACGTCGTCTGGCCTCCGTGCAAGAAGAGCATTAACTTCCACAAGTTCGCCAAGGGTCTGGGTGTGCGTACTGAGTGGAAGAATAAAACAGACGGGGGGATTGGCTCGATCAAAAAAGGTGCCTTGTACTTTGTAATAGCTCCGGGTAACGGAGTAGAGGGACGGATGTTTGGTACGATCCGTATGTACTTCAAGAGTATCGGTAACCAGTAA |
|
Protein Sequence
|
MSQVKKRTRRGDEVEWSKRKRLRSSGSKGSATKLRKLPVRPSLQIQSLYYTLTTYVDFKTGGESYLMASYARGSDEGERHTNETMTYKAALNLHLSASSDACKYSNTGTGCIWLIYDAQPTGNKPSPKDIFGYSDSLNSWPTTWMVSREQCHRFVVKRRWTFTLETNGRLASDVPPSNVVWPPCKKSINFHKFAKGLGVRTEWKNKTDGGIGSIKKGALYFVIAPGNGVEGRMFGTIRMYFKSIGNQ |
|
NCBI Accession
|
YP_006273070.1
|
|
Location
|
1435-1810,1900-2597 |
|
Gene Name
|
Rep |
|
Protein Name
|
replicase |
|
Coding Region
|
ATGTCTCAGACTTCCGCTGAGAACAACTCGGCTAACCCCAAAGCCTCGTCTTCAACCTTCAGGTACCGCAGTAATAACTGCTTTCTTACATTTCCCCACTGTAATTCCTGCCCATATGGAATGGTTCAACACTTCTGGGACCTCATTTCTACTTGGAGTCCTATCTATGCTGTTGCTTCTGTCGAACTACACCAGGATGGTACACCTCATCTCCATGCTCTCCTACAGACTCGCAAGCAAATTTCTACCAATGATCCTCATTTCTTTGATTTTGATGGTCATCATCCTCACATACAAGCTGCAAAGAACCCAACATTATGCCGAGATTACATCCTTAAGGGTCCAATTACTTTTAGCGAGAAGGGAGCATTTATCCCCAGAGGGAGAAATGCAGGAACCAGTCCTAGGCATTCCAATAAACGATCCAGAGATGATATCATGAAAGATATCATAGAGAACTCCACCAACAAGTCTGACTACCTAAGTAAAGTCAGAAGAAACTTCCCATATGACTGGGCCACTAAACTATACAACTTCGAGTATAGTGCCTCGAAGCTCTTCCCTGAACAACAACCAGAGTACAGCAATCCCCACGGCCAATCTGTACCAGACCTCTACTGCTACGAAACTATCCAAGACTGGATAGATTCTAACCTTTTCCAGGTACACCCTTATTGTTATATGCTAAACACACCAACCTACATCGTCGGTCCAACAAGGACCGGAAAATCTACATGGGCAAGGTCCCTGGGCCGACACAACTACTGGCAGAATAATGTAGACTTTACAGTCTACGATCCAGAAGCGGCATATAACATAATCGACGACATTCCATTTAAATTCTGCCCTTGCTGGAAACAGTTGGTAGCGGCCCAGAGGGACTTCACCGTAAACCCTAAGTACGGTAAGAAGAAGTTAATAAAAGGAGGCATCCCCTCAATCATCCTCGTTAACAGCGATGAGGATTGGCTGAAGACAATGACCCCGGAACAACAGGAGTACTTCGAAGCCAATTCCATCATTTACATGATGGAACCAACGGAGAAGTTCTTCGGCGGGGCCGAAATTGTTTAA |
|
Protein Sequence
|
MSQTSAENNSANPKASSSTFRYRSNNCFLTFPHCNSCPYGMVQHFWDLISTWSPIYAVASVELHQDGTPHLHALLQTRKQISTNDPHFFDFDGHHPHIQAAKNPTLCRDYILKGPITFSEKGAFIPRGRNAGTSPRHSNKRSRDDIMKDIIENSTNKSDYLSKVRRNFPYDWATKLYNFEYSASKLFPEQQPEYSNPHGQSVPDLYCYETIQDWIDSNLFQVHPYCYMLNTPTYIVGPTRTGKSTWARSLGRHNYWQNNVDFTVYDPEAAYNIIDDIPFKFCPCWKQLVAAQRDFTVNPKYGKKKLIKGGIPSIILVNSDEDWLKTMTPEQQEYFEANSIIYMMEPTEKFFGGAEIV |
|
NCBI Accession
|
YP_006273071.1
|
|
Location
|
1728-2597 |
|
Gene Name
|
RepA |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGTCTCAGACTTCCGCTGAGAACAACTCGGCTAACCCCAAAGCCTCGTCTTCAACCTTCAGGTACCGCAGTAATAACTGCTTTCTTACATTTCCCCACTGTAATTCCTGCCCATATGGAATGGTTCAACACTTCTGGGACCTCATTTCTACTTGGAGTCCTATCTATGCTGTTGCTTCTGTCGAACTACACCAGGATGGTACACCTCATCTCCATGCTCTCCTACAGACTCGCAAGCAAATTTCTACCAATGATCCTCATTTCTTTGATTTTGATGGTCATCATCCTCACATACAAGCTGCAAAGAACCCAACATTATGCCGAGATTACATCCTTAAGGGTCCAATTACTTTTAGCGAGAAGGGAGCATTTATCCCCAGAGGGAGAAATGCAGGAACCAGTCCTAGGCATTCCAATAAACGATCCAGAGATGATATCATGAAAGATATCATAGAGAACTCCACCAACAAGTCTGACTACCTAAGTAAAGTCAGAAGAAACTTCCCATATGACTGGGCCACTAAACTATACAACTTCGAGTATAGTGCCTCGAAGCTCTTCCCTGAACAACAACCAGAGTACAGCAATCCCCACGGCCAATCTGTACCAGACCTCTACTGCTACGAAACTATCCAAGACTGGATAGATTCTAACCTTTTCCAGGTACACCCTTATTGTTATATGCTAAACACACCAACCATAAACAGCGTAGCAGAGGCTGTACAAGAACTGACATGGTTGCAGGAAAATTCCAGGATCCATCTGCAGGAACAAGGCCAAAGAGCCTCTACATCGTCGGTCCAACAAGGACCGGAAAATCTACATGGGCAAGGTCCCTGGGCCGACACAACTACTGGCAGAATAATGTAG |
|
Protein Sequence
|
MSQTSAENNSANPKASSSTFRYRSNNCFLTFPHCNSCPYGMVQHFWDLISTWSPIYAVASVELHQDGTPHLHALLQTRKQISTNDPHFFDFDGHHPHIQAAKNPTLCRDYILKGPITFSEKGAFIPRGRNAGTSPRHSNKRSRDDIMKDIIENSTNKSDYLSKVRRNFPYDWATKLYNFEYSASKLFPEQQPEYSNPHGQSVPDLYCYETIQDWIDSNLFQVHPYCYMLNTPTINSVAEAVQELTWLQENSRIHLQEQGQRASTSSVQQGPENLHGQGPWADTTTGRIM |